Wall clock time and date at job start Fri Apr 10 2020 18:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47240 * 2 1 4 4 C 1.46500 * 119.99821 * 270.00239 * 3 2 1 5 5 C 1.50706 * 109.47171 * 270.00009 * 4 3 2 6 6 H 1.07998 * 119.99442 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00171 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47256 * 59.99751 * 9 7 5 11 11 H 1.48497 * 109.47084 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46921 * 299.99738 * 9 7 5 13 13 C 1.34776 * 120.00279 * 90.00184 * 3 2 1 14 14 O 1.21281 * 119.99917 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99664 * 359.97438 * 13 3 2 16 16 N 1.46907 * 109.47035 * 180.02562 * 15 13 3 17 17 C 1.46842 * 110.99676 * 293.95450 * 16 15 13 18 18 C 1.53036 * 109.52190 * 185.84074 * 17 16 15 19 19 C 1.53123 * 109.27788 * 300.81892 * 18 17 16 20 20 H 1.09007 * 109.52268 * 297.75177 * 19 18 17 21 21 C 1.50697 * 109.52570 * 177.56259 * 19 18 17 22 22 O 1.20831 * 120.00005 * 240.00735 * 21 19 18 23 23 O 1.34223 * 120.00167 * 59.99601 * 21 19 18 24 24 C 1.45204 * 117.00018 * 180.02562 * 23 21 19 25 25 C 1.53123 * 109.16001 * 57.65365 * 19 18 17 26 26 H 1.08997 * 109.49749 * 62.28489 * 25 19 18 27 27 C 1.52999 * 109.50074 * 182.40572 * 25 19 18 28 28 C 1.46848 * 110.99958 * 58.16512 * 16 15 13 29 29 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46642 * 300.00279 * 1 2 3 31 31 H 1.09000 * 109.47108 * 59.99774 * 1 2 3 32 32 H 1.09002 * 109.46642 * 239.99721 * 2 1 3 33 33 H 1.09000 * 109.47108 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47551 * 29.99880 * 4 3 2 35 35 H 1.08999 * 109.47439 * 150.00133 * 4 3 2 36 36 H 0.96996 * 119.99659 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47344 * 60.00190 * 15 13 3 38 38 H 1.09004 * 109.47269 * 299.99671 * 15 13 3 39 39 H 1.09002 * 109.46766 * 65.82407 * 17 16 15 40 40 H 1.09000 * 109.46420 * 305.85141 * 17 16 15 41 41 H 1.09000 * 109.50632 * 60.76184 * 18 17 16 42 42 H 1.09006 * 109.50216 * 180.87978 * 18 17 16 43 43 H 1.09002 * 109.47065 * 299.99630 * 24 23 21 44 44 H 1.08997 * 109.47105 * 60.00146 * 24 23 21 45 45 H 1.09007 * 109.47216 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.46673 * 179.80689 * 27 25 19 47 47 H 1.08997 * 109.47309 * 299.80194 * 27 25 19 48 48 H 1.08994 * 109.47350 * 59.80786 * 27 25 19 49 49 H 1.09003 * 109.46014 * 294.17985 * 28 16 15 50 50 H 1.08995 * 109.46374 * 54.14015 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0959 7 6 4.1494 2.3904 -2.8776 8 7 3.3494 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4165 10 1 6.1417 0.6407 -3.5943 11 1 6.1613 2.7972 -4.7026 12 1 6.8409 2.6206 -2.3812 13 6 2.2431 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3092 2.2066 3.5888 17 6 3.7453 2.5101 3.6276 18 6 4.0615 3.3278 4.8819 19 6 3.2472 4.6244 4.8588 20 1 3.5361 5.2206 3.9931 21 6 3.5090 5.4061 6.1202 22 8 2.5974 5.6677 6.8690 23 8 4.7547 5.8117 6.4122 24 6 4.9328 6.5597 7.6439 25 6 1.7577 4.2808 4.7694 26 1 1.4605 3.7178 5.6542 27 6 0.9400 5.5712 4.6854 28 6 1.5083 3.4354 3.5184 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6755 3.5169 -4.4436 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0127 2.5298 39 1 4.0195 3.0832 2.7418 40 1 4.3128 1.5797 3.6480 41 1 3.8005 2.7499 5.7685 42 1 5.1250 3.5663 4.9023 43 1 4.3302 7.4673 7.6082 44 1 4.6184 5.9477 8.4893 45 1 5.9836 6.8260 7.7586 46 1 -0.1199 5.3259 4.6183 47 1 1.1180 6.1729 5.5766 48 1 1.2393 6.1341 3.8013 49 1 1.7929 4.0041 2.6331 50 1 0.4511 3.1770 3.4594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249157942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:52 Heat of formation + Delta-G solvation = -140.148655 kcal Electronic energy + Delta-G solvation = -29601.954057 eV Core-core repulsion = 25628.452116 eV Total energy + Delta-G solvation = -3973.501941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99410 -41.14832 -39.25983 -37.60482 -36.85905 -35.18863 -34.77756 -33.14144 -31.59186 -30.13710 -29.04407 -27.97288 -27.55417 -25.44838 -24.50617 -23.76697 -22.89794 -22.16994 -20.76132 -19.86181 -18.66481 -18.60519 -17.95203 -17.82096 -17.40769 -17.22812 -16.49045 -16.35581 -16.01404 -15.58466 -15.31959 -15.12184 -14.96981 -14.63518 -14.48258 -14.32064 -13.99793 -13.83306 -13.54900 -13.32168 -13.20551 -13.13784 -13.07964 -12.99132 -12.82770 -12.63287 -12.55691 -12.38627 -12.28955 -12.12924 -11.86683 -11.82653 -11.80296 -11.70315 -11.62116 -11.35419 -11.10007 -11.03961 -10.64464 -9.38817 -9.06234 -8.22199 -6.37219 1.11094 1.35936 1.39665 1.47026 1.72789 1.85091 2.32347 2.49322 2.90163 3.07209 3.47496 3.68215 3.72542 3.83729 4.03344 4.16169 4.20035 4.29748 4.32643 4.32894 4.41916 4.46411 4.49890 4.54526 4.59816 4.67185 4.69169 4.72513 4.78806 4.84573 4.91387 4.96792 4.98192 5.04583 5.06563 5.07842 5.18151 5.22744 5.24244 5.39716 5.41609 5.46681 5.59982 5.88365 5.95177 6.03456 6.07675 6.69772 6.70998 6.85661 7.29386 7.53203 8.84334 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003337 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.500697 B = 8388.729853 C = 9572.748550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.465 3.535 14 O -0.584 6.584 15 C 0.044 3.956 16 N -0.506 5.506 17 C 0.042 3.958 18 C -0.092 4.092 19 C -0.079 4.079 20 H 0.096 0.904 21 C 0.474 3.526 22 O -0.523 6.523 23 O -0.365 6.365 24 C 0.027 3.973 25 C -0.057 4.057 26 H 0.084 0.916 27 C -0.152 4.152 28 C 0.042 3.958 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.015 0.985 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.033 0.967 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.129 0.871 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.043 0.957 49 H 0.049 0.951 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -3.245 20.311 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.334 5.334 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.253 3.747 14 O -0.466 6.466 15 C -0.087 4.087 16 N -0.228 5.228 17 C -0.086 4.086 18 C -0.130 4.130 19 C -0.098 4.098 20 H 0.114 0.886 21 C 0.318 3.682 22 O -0.412 6.412 23 O -0.281 6.281 24 C -0.066 4.066 25 C -0.076 4.076 26 H 0.103 0.897 27 C -0.209 4.209 28 C -0.085 4.085 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.033 0.967 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.612 -2.720 20.835 21.074 hybrid contribution 0.902 0.966 -1.657 2.120 sum -0.710 -1.754 19.178 19.271 Atomic orbital electron populations 1.22148 0.94719 1.03459 1.01551 1.21743 0.95190 0.81443 1.03945 1.48458 1.63493 1.15038 1.06433 1.18621 0.95037 0.91364 0.80763 1.21676 0.97872 1.31815 1.06430 0.92811 1.25857 1.02289 0.94531 0.96508 1.70051 1.37823 1.34302 1.14813 0.85500 0.79168 0.79024 0.77330 1.18435 1.20559 1.20236 1.22685 0.77366 0.87162 0.87447 1.90556 1.48067 1.20354 1.87577 1.22488 1.05597 0.96765 0.83889 1.62554 1.05906 1.15305 1.38998 1.22239 0.88731 1.00397 0.97216 1.21486 0.99851 0.92880 0.98792 1.21239 0.98563 0.97147 0.92841 0.88580 1.23824 0.80475 0.76484 0.87377 1.90591 1.45195 1.54631 1.50825 1.86528 1.31120 1.66728 1.43764 1.23551 1.04873 0.95155 0.82992 1.20904 0.91514 0.96583 0.98629 0.89725 1.21931 1.00412 0.96810 1.01794 1.22404 0.97823 0.90901 0.97417 0.88675 0.91953 0.94694 0.91342 0.87758 0.96663 0.98843 0.92509 0.85732 0.85582 0.94903 0.89222 0.89762 0.89287 0.92079 0.91574 0.85309 0.91408 0.91335 0.93825 0.93250 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -24.38 2.46 -826.15 -2.03 -26.41 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 9 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.47 17.89 7.09 87.66 0.62 18.51 16 14 O -0.58 -27.79 11.20 -3.03 -0.03 -27.82 16 15 C 0.04 1.14 4.41 85.55 0.38 1.51 16 16 N -0.51 -13.42 4.86 -900.94 -4.38 -17.79 16 17 C 0.04 1.15 5.09 86.33 0.44 1.59 16 18 C -0.09 -2.12 5.31 30.65 0.16 -1.95 16 19 C -0.08 -2.00 2.20 -11.46 -0.03 -2.03 16 20 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 21 C 0.47 11.92 6.98 71.23 0.50 12.41 16 22 O -0.52 -14.77 13.57 21.95 0.30 -14.47 16 23 O -0.37 -8.12 10.49 -51.35 -0.54 -8.66 16 24 C 0.03 0.41 10.56 113.37 1.20 1.61 16 25 C -0.06 -1.47 2.02 -10.74 -0.02 -1.50 16 26 H 0.08 2.14 8.05 -2.39 -0.02 2.12 16 27 C -0.15 -3.84 8.91 71.98 0.64 -3.20 16 28 C 0.04 1.21 4.26 86.32 0.37 1.58 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.10 2.18 6.44 -2.39 -0.02 2.17 16 34 H 0.02 0.84 8.07 -2.39 -0.02 0.83 16 35 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.12 2.63 7.32 -2.39 -0.02 2.61 16 38 H 0.13 2.62 7.18 -2.38 -0.02 2.60 16 39 H 0.03 1.18 6.00 -2.39 -0.01 1.17 16 40 H 0.09 2.14 8.06 -2.39 -0.02 2.12 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 44 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 45 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.81 5.74 -2.39 -0.01 1.79 16 48 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.05 1.83 5.36 -2.39 -0.01 1.82 16 50 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 Total: -1.00 -74.38 390.31 3.19 -71.18 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.91 Total: 19.71 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.65 Total: 13.76 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -6.12 Total: -100.36 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.27 Total: -50.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -74.38 3.19 -71.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249157942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.964 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds