Wall clock time and date at job start Fri Apr 10 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47407 * 2 1 4 4 C 1.50698 * 109.47088 * 120.00374 * 2 1 3 5 5 O 1.21286 * 119.99852 * 240.00007 * 4 2 1 6 6 N 1.34776 * 120.00581 * 59.99613 * 4 2 1 7 7 C 1.46492 * 120.00768 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.47013 * 325.00255 * 7 6 4 9 9 C 1.53001 * 109.47056 * 85.00030 * 7 6 4 10 10 O 1.42897 * 109.47405 * 64.75823 * 9 7 6 11 11 C 1.50699 * 109.47738 * 205.00369 * 7 6 4 12 12 O 1.21280 * 119.99368 * 352.38715 * 11 7 6 13 13 N 1.34770 * 120.00372 * 172.39683 * 11 7 6 14 14 C 1.46929 * 120.63119 * 5.16294 * 13 11 7 15 15 C 1.52754 * 109.01159 * 233.58919 * 14 13 11 16 16 C 1.53043 * 109.38435 * 305.58822 * 15 14 13 17 17 C 1.53003 * 109.45925 * 181.25600 * 16 15 14 18 18 C 1.50697 * 109.46674 * 64.93593 * 17 16 15 19 19 H 1.08006 * 120.00735 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00112 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99822 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47369 * 89.99557 * 22 20 18 24 24 H 1.48502 * 109.46919 * 209.99428 * 22 20 18 25 25 H 1.48497 * 109.46987 * 329.99308 * 22 20 18 26 26 C 1.53048 * 109.53301 * 61.24321 * 16 15 14 27 27 C 1.46925 * 120.63156 * 185.45153 * 13 11 7 28 28 H 1.08998 * 109.47120 * 59.99782 * 1 2 3 29 29 H 1.09003 * 109.47671 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47090 * 300.00213 * 1 2 3 31 31 H 1.09003 * 109.47090 * 239.99787 * 2 1 3 32 32 H 1.09003 * 109.47500 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47159 * 300.00194 * 3 2 1 34 34 H 1.09003 * 109.47170 * 59.99835 * 3 2 1 35 35 H 0.97010 * 119.99211 * 0.02562 * 6 4 2 36 36 H 1.09003 * 109.47302 * 184.75985 * 9 7 6 37 37 H 1.09004 * 109.47296 * 304.75722 * 9 7 6 38 38 H 0.96699 * 113.99990 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.58649 * 353.42741 * 14 13 11 40 40 H 1.09002 * 109.58425 * 113.84863 * 14 13 11 41 41 H 1.09001 * 109.56362 * 185.55120 * 15 14 13 42 42 H 1.09001 * 109.35839 * 65.50070 * 15 14 13 43 43 H 1.08991 * 109.46065 * 301.22403 * 16 15 14 44 44 H 1.08994 * 109.46839 * 184.93107 * 17 16 15 45 45 H 1.08998 * 109.47603 * 304.93967 * 17 16 15 46 46 H 0.96994 * 120.00051 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.49003 * 178.67995 * 26 16 15 48 48 H 1.08998 * 109.52788 * 58.60086 * 26 16 15 49 49 H 1.08992 * 109.58941 * 246.15032 * 27 13 11 50 50 H 1.09004 * 109.58706 * 6.43523 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7295 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 2.1945 -2.6913 2.6401 8 1 3.1936 -2.3312 2.8854 9 6 1.2499 -2.4121 3.8109 10 8 -0.0313 -2.9818 3.5357 11 6 2.2454 -4.1746 2.3785 12 8 1.7799 -4.6258 1.3535 13 7 2.8080 -4.9996 3.2835 14 6 3.2741 -4.4844 4.5782 15 6 4.7335 -4.8887 4.7784 16 6 4.8669 -6.4050 4.6201 17 6 6.3225 -6.8156 4.8512 18 6 6.7049 -6.5272 6.2800 19 1 5.9822 -6.0940 6.9557 20 6 7.9778 -6.8154 6.7247 21 7 8.8582 -7.3424 5.9020 22 14 8.4516 -6.4585 8.4960 23 1 8.1571 -7.6469 9.3363 24 1 9.9022 -6.1489 8.5676 25 1 7.6723 -5.2960 8.9922 26 6 4.4406 -6.8115 3.2075 27 6 2.9727 -6.4301 2.9918 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1492 -2.4723 0.8050 36 1 1.6569 -2.8552 4.7198 37 1 1.1473 -1.3354 3.9461 38 1 -0.6825 -2.8427 4.2369 39 1 3.1926 -3.3975 4.5897 40 1 2.6676 -4.9069 5.3793 41 1 5.0594 -4.5970 5.7768 42 1 5.3523 -4.3892 4.0329 43 1 4.2288 -6.9037 5.3496 44 1 6.4352 -7.8814 4.6530 45 1 6.9703 -6.2508 4.1807 46 1 9.7537 -7.5448 6.2146 47 1 4.5581 -7.8886 3.0880 48 1 5.0621 -6.2945 2.4764 49 1 2.3412 -7.0146 3.6609 50 1 2.6900 -6.6271 1.9577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521048917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:36 Heat of formation + Delta-G solvation = -141.413706 kcal Electronic energy + Delta-G solvation = -29168.586524 eV Core-core repulsion = 25195.029726 eV Total energy + Delta-G solvation = -3973.556798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85506 -39.66010 -37.59648 -36.99745 -34.74559 -34.54615 -34.10878 -32.26487 -31.14730 -29.56864 -28.03347 -27.37040 -25.20089 -24.36800 -23.11987 -22.87790 -21.45385 -20.22957 -19.96812 -18.86393 -18.11978 -17.35774 -16.75342 -16.45209 -16.29505 -15.65184 -15.33652 -15.20153 -14.83533 -14.54875 -14.36709 -13.87479 -13.82385 -13.70885 -13.36661 -13.06077 -12.99553 -12.90494 -12.61845 -12.48962 -12.37308 -12.22274 -11.92368 -11.84212 -11.46377 -11.36726 -11.23055 -11.03788 -10.84962 -10.73614 -10.53369 -10.42294 -10.17436 -9.98803 -9.84588 -9.60925 -9.32433 -9.26553 -9.01026 -8.44141 -8.37774 -6.02713 -4.05029 2.39202 2.59503 2.66814 3.22412 3.28961 3.36052 3.37701 3.89404 4.25852 4.39707 4.42627 4.58598 4.65114 4.79065 4.88492 5.02133 5.10057 5.22715 5.26239 5.29135 5.31855 5.35411 5.41159 5.41979 5.46585 5.53700 5.62529 5.64574 5.68378 5.83020 5.93004 5.96839 6.00125 6.13885 6.30208 6.33179 6.46179 6.59995 6.89773 6.93868 7.05912 7.28252 7.33086 7.44067 7.63352 7.77671 7.96617 8.00731 8.11739 8.38511 9.01415 9.59005 11.08533 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002721 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.695287 B =10287.732232 C =10844.687865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.518 3.482 5 O -0.543 6.543 6 N -0.704 5.704 7 C 0.128 3.872 8 H 0.126 0.874 9 C 0.061 3.939 10 O -0.563 6.563 11 C 0.524 3.476 12 O -0.543 6.543 13 N -0.598 5.598 14 C 0.095 3.905 15 C -0.122 4.122 16 C -0.080 4.080 17 C 0.027 3.973 18 C -0.517 4.517 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.130 4.130 27 C 0.115 3.885 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.380 0.620 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.741 12.776 -8.783 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.190 4.190 4 C 0.305 3.695 5 O -0.420 6.420 6 N -0.358 5.358 7 C 0.019 3.981 8 H 0.143 0.857 9 C -0.018 4.018 10 O -0.368 6.368 11 C 0.311 3.689 12 O -0.420 6.420 13 N -0.331 5.331 14 C -0.027 4.027 15 C -0.160 4.160 16 C -0.099 4.099 17 C -0.010 4.010 18 C -0.555 4.555 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.168 4.168 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.227 0.773 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.996 12.702 -9.313 23.915 hybrid contribution 0.025 0.010 1.372 1.372 sum -17.971 12.712 -7.941 23.401 Atomic orbital electron populations 1.21790 0.92739 1.02774 1.02852 1.21291 0.97732 0.98015 0.96437 1.21615 1.01925 0.93360 1.02079 1.20781 0.79637 0.81317 0.87757 1.90707 1.37968 1.66002 1.47280 1.45685 1.53629 1.11888 1.24559 1.20872 0.99648 0.90973 0.86581 0.85682 1.22773 0.84452 0.98337 0.96254 1.86536 1.21915 1.80180 1.48173 1.20116 0.77573 0.87811 0.83394 1.90637 1.47003 1.77101 1.27293 1.48021 1.59138 1.09231 1.16704 1.22109 0.97594 0.98755 0.84229 1.21863 0.92765 0.97863 1.03460 1.21190 1.00900 0.94025 0.93764 1.19123 0.88613 0.96553 0.96664 1.21224 0.96854 1.41249 0.96204 0.92599 1.25028 0.96752 0.95343 0.97354 1.69961 1.04961 1.43515 1.34983 0.86641 0.77691 0.78593 0.85344 1.20748 1.21302 1.19888 1.22047 0.94072 1.01418 0.99283 1.21689 0.97683 0.79336 1.02013 0.91349 0.91880 0.92081 0.88314 0.91840 0.92001 0.91931 0.74995 0.91189 0.92015 0.77262 0.90285 0.91071 0.89421 0.92148 0.92256 0.96563 0.96609 0.93017 0.90959 0.92056 0.91641 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.09 37.15 0.34 -0.61 16 2 C -0.11 -0.94 3.26 -91.78 -0.30 -1.24 16 3 C -0.13 -1.07 8.48 37.15 0.32 -0.76 16 4 C 0.52 6.05 7.12 -10.99 -0.08 5.98 16 5 O -0.54 -8.03 15.64 5.55 0.09 -7.94 16 6 N -0.70 -8.21 4.83 -54.94 -0.27 -8.47 16 7 C 0.13 1.59 1.94 -69.09 -0.13 1.46 16 8 H 0.13 1.62 6.97 -51.93 -0.36 1.25 16 9 C 0.06 0.62 6.42 37.16 0.24 0.86 16 10 O -0.56 -5.69 13.09 -35.23 -0.46 -6.15 16 11 C 0.52 7.68 6.62 -10.99 -0.07 7.61 16 12 O -0.54 -9.25 15.26 5.56 0.08 -9.17 16 13 N -0.60 -8.50 2.98 -173.03 -0.52 -9.01 16 14 C 0.10 1.24 5.21 -3.93 -0.02 1.22 16 15 C -0.12 -2.01 5.17 -26.84 -0.14 -2.15 16 16 C -0.08 -1.50 2.10 -90.57 -0.19 -1.69 16 17 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 18 C -0.52 -13.77 8.39 -34.44 -0.29 -14.06 16 19 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 27 C 0.11 1.67 6.42 -3.71 -0.02 1.65 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 7.57 -51.93 -0.39 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.41 4.68 7.15 -40.82 -0.29 4.39 16 36 H 0.07 0.63 5.36 -51.93 -0.28 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.38 2.13 9.12 45.56 0.42 2.54 16 39 H 0.08 0.87 4.37 -51.93 -0.23 0.64 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.54 6.91 -51.93 -0.36 1.18 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.08 1.28 7.04 -51.93 -0.37 0.91 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -33.60 393.32 -7.85 -41.45 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.70 Total: 4.99 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.72 Total: -2.00 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.04 Total: -43.14 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.29 Total: -23.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.60 -7.85 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521048917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.964 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds