Wall clock time and date at job start Fri Apr 10 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47407 * 2 1 4 4 C 1.50698 * 109.47088 * 120.00374 * 2 1 3 5 5 O 1.21286 * 119.99852 * 240.00007 * 4 2 1 6 6 N 1.34776 * 120.00581 * 59.99613 * 4 2 1 7 7 C 1.46492 * 120.00768 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.47013 * 325.00255 * 7 6 4 9 9 C 1.53001 * 109.47056 * 85.00030 * 7 6 4 10 10 O 1.42897 * 109.47405 * 64.75823 * 9 7 6 11 11 C 1.50699 * 109.47738 * 205.00369 * 7 6 4 12 12 O 1.21280 * 119.99368 * 352.38715 * 11 7 6 13 13 N 1.34770 * 120.00372 * 172.39683 * 11 7 6 14 14 C 1.46929 * 120.63119 * 5.16294 * 13 11 7 15 15 C 1.52754 * 109.01159 * 233.58919 * 14 13 11 16 16 C 1.53043 * 109.38435 * 305.58822 * 15 14 13 17 17 C 1.53003 * 109.45925 * 181.25600 * 16 15 14 18 18 C 1.50697 * 109.46674 * 64.93593 * 17 16 15 19 19 H 1.08006 * 120.00735 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00112 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99822 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47369 * 89.99557 * 22 20 18 24 24 H 1.48502 * 109.46919 * 209.99428 * 22 20 18 25 25 H 1.48497 * 109.46987 * 329.99308 * 22 20 18 26 26 C 1.53048 * 109.53301 * 61.24321 * 16 15 14 27 27 C 1.46925 * 120.63156 * 185.45153 * 13 11 7 28 28 H 1.08998 * 109.47120 * 59.99782 * 1 2 3 29 29 H 1.09003 * 109.47671 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47090 * 300.00213 * 1 2 3 31 31 H 1.09003 * 109.47090 * 239.99787 * 2 1 3 32 32 H 1.09003 * 109.47500 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47159 * 300.00194 * 3 2 1 34 34 H 1.09003 * 109.47170 * 59.99835 * 3 2 1 35 35 H 0.97010 * 119.99211 * 0.02562 * 6 4 2 36 36 H 1.09003 * 109.47302 * 184.75985 * 9 7 6 37 37 H 1.09004 * 109.47296 * 304.75722 * 9 7 6 38 38 H 0.96699 * 113.99990 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.58649 * 353.42741 * 14 13 11 40 40 H 1.09002 * 109.58425 * 113.84863 * 14 13 11 41 41 H 1.09001 * 109.56362 * 185.55120 * 15 14 13 42 42 H 1.09001 * 109.35839 * 65.50070 * 15 14 13 43 43 H 1.08991 * 109.46065 * 301.22403 * 16 15 14 44 44 H 1.08994 * 109.46839 * 184.93107 * 17 16 15 45 45 H 1.08998 * 109.47603 * 304.93967 * 17 16 15 46 46 H 0.96994 * 120.00051 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.49003 * 178.67995 * 26 16 15 48 48 H 1.08998 * 109.52788 * 58.60086 * 26 16 15 49 49 H 1.08992 * 109.58941 * 246.15032 * 27 13 11 50 50 H 1.09004 * 109.58706 * 6.43523 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7295 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 2.1945 -2.6913 2.6401 8 1 3.1936 -2.3312 2.8854 9 6 1.2499 -2.4121 3.8109 10 8 -0.0313 -2.9818 3.5357 11 6 2.2454 -4.1746 2.3785 12 8 1.7799 -4.6258 1.3535 13 7 2.8080 -4.9996 3.2835 14 6 3.2741 -4.4844 4.5782 15 6 4.7335 -4.8887 4.7784 16 6 4.8669 -6.4050 4.6201 17 6 6.3225 -6.8156 4.8512 18 6 6.7049 -6.5272 6.2800 19 1 5.9822 -6.0940 6.9557 20 6 7.9778 -6.8154 6.7247 21 7 8.8582 -7.3424 5.9020 22 14 8.4516 -6.4585 8.4960 23 1 8.1571 -7.6469 9.3363 24 1 9.9022 -6.1489 8.5676 25 1 7.6723 -5.2960 8.9922 26 6 4.4406 -6.8115 3.2075 27 6 2.9727 -6.4301 2.9918 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1492 -2.4723 0.8050 36 1 1.6569 -2.8552 4.7198 37 1 1.1473 -1.3354 3.9461 38 1 -0.6825 -2.8427 4.2369 39 1 3.1926 -3.3975 4.5897 40 1 2.6676 -4.9069 5.3793 41 1 5.0594 -4.5970 5.7768 42 1 5.3523 -4.3892 4.0329 43 1 4.2288 -6.9037 5.3496 44 1 6.4352 -7.8814 4.6530 45 1 6.9703 -6.2508 4.1807 46 1 9.7537 -7.5448 6.2146 47 1 4.5581 -7.8886 3.0880 48 1 5.0621 -6.2945 2.4764 49 1 2.3412 -7.0146 3.6609 50 1 2.6900 -6.6271 1.9577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521048917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:35 Heat of formation + Delta-G solvation = -166.108044 kcal Electronic energy + Delta-G solvation = -29169.657351 eV Core-core repulsion = 25195.029726 eV Total energy + Delta-G solvation = -3974.627625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90128 -40.68757 -38.86559 -37.87785 -35.76345 -35.52547 -35.39612 -34.06090 -32.38999 -30.64042 -29.67552 -27.94712 -26.63801 -25.42663 -24.32776 -24.11595 -22.82295 -21.30023 -21.10796 -20.09008 -18.99933 -18.41123 -18.20096 -17.75332 -17.45738 -16.61564 -16.53226 -16.38607 -16.16046 -15.65707 -15.27163 -15.16290 -15.06542 -14.64867 -14.57738 -14.45766 -14.22543 -13.96836 -13.71518 -13.50108 -13.38917 -13.17932 -13.04377 -12.95105 -12.82348 -12.67791 -12.51561 -12.31541 -12.13977 -12.07371 -11.99332 -11.76771 -11.37695 -11.30466 -11.17443 -10.92331 -10.85566 -10.63231 -10.50291 -10.25075 -9.67289 -8.15814 -6.25230 1.39990 1.42403 1.42881 1.53372 1.55941 1.68266 2.23763 2.43306 3.11022 3.18295 3.26378 3.63840 3.82328 3.88267 3.97535 4.01271 4.05317 4.06728 4.15259 4.24061 4.32043 4.38512 4.44161 4.51114 4.57326 4.65266 4.77015 4.77449 4.87448 4.88615 4.93521 4.94426 5.06229 5.07824 5.18884 5.29874 5.30943 5.32032 5.36441 5.38386 5.52125 5.57797 5.81800 5.90171 6.27368 6.31248 6.42587 6.80058 6.92075 6.95979 7.12340 7.43711 8.96230 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002721 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.695287 B =10287.732232 C =10844.687865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.130 4.130 4 C 0.515 3.485 5 O -0.578 6.578 6 N -0.701 5.701 7 C 0.125 3.875 8 H 0.119 0.881 9 C 0.069 3.931 10 O -0.578 6.578 11 C 0.524 3.476 12 O -0.569 6.569 13 N -0.600 5.600 14 C 0.104 3.896 15 C -0.117 4.117 16 C -0.072 4.072 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.069 0.931 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.258 1.258 26 C -0.122 4.122 27 C 0.122 3.878 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.067 0.933 44 H -0.014 1.014 45 H -0.017 1.017 46 H 0.260 0.740 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.084 0.916 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 13.964 -7.927 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C -0.188 4.188 4 C 0.303 3.697 5 O -0.458 6.458 6 N -0.354 5.354 7 C 0.015 3.985 8 H 0.136 0.864 9 C -0.010 4.010 10 O -0.386 6.386 11 C 0.312 3.688 12 O -0.449 6.449 13 N -0.332 5.332 14 C -0.018 4.018 15 C -0.155 4.155 16 C -0.091 4.091 17 C -0.005 4.005 18 C -0.563 4.563 19 H 0.087 0.913 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.181 1.181 26 C -0.161 4.161 27 C 0.000 4.000 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.001 0.999 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.377 13.893 -8.442 26.067 hybrid contribution 0.777 -0.400 1.050 1.366 sum -19.601 13.493 -7.392 24.917 Atomic orbital electron populations 1.21772 0.91127 1.03065 1.03644 1.21376 0.98962 0.97711 0.95126 1.21615 1.00921 0.93440 1.02809 1.21425 0.78862 0.81096 0.88316 1.90686 1.39645 1.66683 1.48764 1.45724 1.53370 1.11919 1.24435 1.20929 1.00276 0.89323 0.87926 0.86361 1.22663 0.84321 0.98576 0.95427 1.86490 1.22265 1.80203 1.49659 1.20475 0.76919 0.88636 0.82801 1.90621 1.48235 1.77745 1.28265 1.48079 1.58910 1.09061 1.17117 1.22133 0.95019 1.00382 0.84267 1.21751 0.95380 0.95905 1.02475 1.21033 0.96939 0.95766 0.95337 1.19024 0.92024 0.94178 0.95304 1.21680 0.97102 1.40279 0.97204 0.91252 1.25979 0.96968 0.95307 1.01932 1.70114 1.05387 1.45163 1.37297 0.85524 0.77166 0.78999 0.79844 1.20077 1.21564 1.18148 1.21927 0.95440 1.01387 0.97310 1.21587 0.96055 0.80003 1.02391 0.89247 0.91831 0.92600 0.86848 0.93412 0.89470 0.92961 0.74739 0.89601 0.91809 0.74938 0.87914 0.88752 0.90199 0.93745 0.91471 0.99540 0.99867 0.93114 0.90786 0.93655 0.89741 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.09 71.98 0.65 -0.88 16 2 C -0.11 -1.67 3.26 -11.54 -0.04 -1.71 16 3 C -0.13 -1.95 8.48 71.98 0.61 -1.34 16 4 C 0.51 11.63 7.12 87.66 0.62 12.25 16 5 O -0.58 -17.00 15.64 -3.05 -0.05 -17.05 16 6 N -0.70 -15.64 4.83 -446.11 -2.15 -17.79 16 7 C 0.12 2.93 1.94 44.25 0.09 3.01 16 8 H 0.12 2.95 6.97 -2.39 -0.02 2.94 16 9 C 0.07 1.24 6.42 71.98 0.46 1.70 16 10 O -0.58 -10.18 13.09 -148.98 -1.95 -12.13 16 11 C 0.52 14.61 6.62 87.66 0.58 15.19 16 12 O -0.57 -18.83 15.26 -3.03 -0.05 -18.87 16 13 N -0.60 -15.97 2.98 -819.75 -2.44 -18.41 16 14 C 0.10 2.44 5.21 86.22 0.45 2.89 16 15 C -0.12 -3.79 5.17 30.53 0.16 -3.63 16 16 C -0.07 -2.69 2.10 -10.76 -0.02 -2.71 16 17 C 0.03 1.60 4.45 29.85 0.13 1.74 16 18 C -0.52 -28.15 8.39 25.60 0.21 -27.93 16 19 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 20 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 21 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 22 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 C -0.12 -4.01 5.36 30.68 0.16 -3.85 16 27 C 0.12 3.37 6.42 86.36 0.55 3.93 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.71 7.57 -2.39 -0.02 0.69 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.88 8.10 -2.39 -0.02 0.87 16 35 H 0.41 8.95 7.15 -92.70 -0.66 8.29 16 36 H 0.09 1.25 5.36 -2.39 -0.01 1.23 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.40 3.30 9.12 -74.06 -0.68 2.63 16 39 H 0.10 1.98 4.37 -2.39 -0.01 1.97 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.72 6.91 -2.39 -0.02 2.70 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 48 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.08 2.38 7.04 -2.38 -0.02 2.36 16 Total: -1.00 -74.23 393.32 0.37 -73.86 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.39 Total: 22.96 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.09 Total: -1.15 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -4.31 Total: -92.82 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -2.04 Total: -48.05 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.23 0.37 -73.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521048917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.251 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds