Wall clock time and date at job start Fri Apr 10 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 N 1.46497 * 109.46966 * 239.99889 * 2 1 3 5 5 C 1.34779 * 119.99747 * 85.00286 * 4 2 1 6 6 O 1.21277 * 120.00043 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99919 * 179.72174 * 5 4 2 8 8 C 1.52993 * 109.47211 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47159 * 60.00184 * 8 7 5 10 10 C 1.52999 * 109.47156 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.47119 * 299.99908 * 8 7 5 12 12 C 1.50700 * 109.47101 * 119.99995 * 2 1 3 13 13 O 1.21283 * 120.00158 * 93.04996 * 12 2 1 14 14 N 1.34772 * 120.00115 * 273.05333 * 12 2 1 15 15 C 1.47420 * 125.64836 * 4.63280 * 14 12 2 16 16 C 1.55133 * 104.72438 * 155.82281 * 15 14 12 17 17 C 1.55154 * 101.48285 * 37.29355 * 16 15 14 18 18 O 1.42898 * 110.71909 * 82.70153 * 17 16 15 19 19 C 1.50701 * 110.87326 * 205.89679 * 17 16 15 20 20 H 1.08005 * 119.99835 * 113.61430 * 19 17 16 21 21 C 1.37877 * 120.00383 * 293.61789 * 19 17 16 22 22 N 1.31511 * 119.99818 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00095 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47326 * 59.99704 * 23 21 19 25 25 H 1.48506 * 109.47189 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47126 * 299.99757 * 23 21 19 27 27 C 1.47025 * 125.64724 * 184.94770 * 14 12 2 28 28 H 1.08993 * 109.47002 * 57.42369 * 1 2 3 29 29 H 1.09003 * 109.46666 * 177.42010 * 1 2 3 30 30 H 1.09000 * 109.47108 * 297.41848 * 1 2 3 31 31 H 0.97001 * 120.00053 * 264.99649 * 4 2 1 32 32 H 1.08994 * 109.47054 * 300.00161 * 7 5 4 33 33 H 1.09002 * 109.46904 * 60.00028 * 7 5 4 34 34 H 1.08994 * 109.46989 * 59.99705 * 9 8 7 35 35 H 1.09004 * 109.47323 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.46762 * 299.99737 * 9 8 7 37 37 H 1.09002 * 109.46947 * 60.00240 * 10 8 7 38 38 H 1.09001 * 109.47329 * 179.97438 * 10 8 7 39 39 H 1.08991 * 109.47437 * 299.99968 * 10 8 7 40 40 H 1.09000 * 109.46834 * 60.00216 * 11 8 7 41 41 H 1.09004 * 109.47278 * 179.97438 * 11 8 7 42 42 H 1.08995 * 109.47141 * 300.00009 * 11 8 7 43 43 H 1.08998 * 110.36860 * 274.75204 * 15 14 12 44 44 H 1.09002 * 110.36606 * 37.07813 * 15 14 12 45 45 H 1.09005 * 111.18911 * 279.19546 * 16 15 14 46 46 H 1.08991 * 110.93964 * 155.29172 * 16 15 14 47 47 H 0.96705 * 114.00557 * 66.47081 * 18 17 16 48 48 H 0.97004 * 120.00256 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.88436 * 300.43553 * 27 14 12 50 50 H 1.08999 * 109.88232 * 61.44845 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1584 -2.4116 7 6 2.6553 -0.7271 -3.5861 8 6 2.7050 0.2555 -4.7577 9 6 3.6431 1.4138 -4.4125 10 6 3.2204 -0.4643 -6.0055 11 6 1.3005 0.7995 -5.0270 12 6 2.0324 -0.7104 1.2305 13 8 2.2872 -1.8953 1.1851 14 7 2.1984 -0.0291 2.3814 15 6 1.8385 1.3832 2.6034 16 6 1.6283 1.5003 4.1359 17 6 2.7394 0.5598 4.6728 18 8 3.9950 1.2398 4.7265 19 6 2.3723 0.0145 6.0289 20 1 2.1773 -1.0407 6.1519 21 6 2.2854 0.8625 7.1126 22 7 2.5233 2.1472 6.9629 23 14 1.8297 0.1866 8.7933 24 1 2.8342 -0.8249 9.2091 25 1 1.8048 1.2943 9.7822 26 1 0.4883 -0.4469 8.7250 27 6 2.7745 -0.5694 3.6215 28 1 -0.3633 0.5533 -0.8659 29 1 -0.3633 -1.0267 -0.0463 30 1 -0.3633 0.4732 0.9122 31 1 2.2491 -1.6318 -1.1526 32 1 3.6556 -1.1150 -3.3941 33 1 1.9867 -1.5520 -3.8322 34 1 4.6436 1.0262 -4.2207 35 1 3.6781 2.1141 -5.2471 36 1 3.2754 1.9265 -3.5237 37 1 2.5516 -1.2893 -6.2513 38 1 3.2553 0.2356 -6.8404 39 1 4.2208 -0.8522 -5.8141 40 1 0.9329 1.3122 -4.1381 41 1 1.3359 1.4999 -5.8614 42 1 0.6322 -0.0257 -5.2729 43 1 2.6480 2.0366 2.2781 44 1 0.9170 1.6274 2.0748 45 1 0.6402 1.1433 4.4265 46 1 1.7864 2.5244 4.4736 47 1 4.0256 1.9591 5.3722 48 1 2.4625 2.7439 7.7253 49 1 2.1819 -1.4164 3.9673 50 1 3.8032 -0.8839 3.4461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:52 Heat of formation + Delta-G solvation = -136.272221 kcal Electronic energy + Delta-G solvation = -29065.090187 eV Core-core repulsion = 25091.756341 eV Total energy + Delta-G solvation = -3973.333847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57449 -39.54530 -37.59281 -36.70915 -34.80102 -34.45989 -32.20552 -31.41402 -29.69875 -28.45394 -28.07556 -27.36557 -27.30259 -25.57499 -23.98203 -22.27572 -20.72477 -19.86209 -19.42380 -18.72926 -17.60198 -17.22182 -16.36017 -16.18110 -15.63537 -15.24581 -14.99346 -14.84659 -14.60322 -14.43647 -14.26691 -14.05582 -13.92685 -13.14685 -13.04634 -12.82673 -12.50581 -12.34697 -12.31844 -12.15821 -12.04068 -11.92534 -11.71563 -11.58001 -11.46780 -11.40733 -11.34208 -11.24024 -10.92914 -10.92206 -10.82332 -10.67353 -10.56338 -10.18476 -9.64672 -9.58201 -9.45153 -9.11127 -8.71707 -8.28096 -8.15374 -6.34970 -4.42567 2.50653 2.72169 3.00045 3.18434 3.23595 3.26788 3.53974 4.22099 4.44307 4.54776 4.63408 4.67157 4.92720 5.00796 5.08996 5.14029 5.26803 5.30015 5.34991 5.43210 5.44987 5.54207 5.59269 5.68178 5.71144 5.74589 5.75717 5.83210 5.92668 5.93762 5.95094 6.04387 6.07165 6.13241 6.24502 6.34869 6.36519 6.51900 6.58216 6.80999 6.86825 7.22873 7.26927 7.43511 7.67963 7.92285 7.93872 8.16348 8.38591 8.59384 9.25842 9.39420 10.72871 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.002418 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.871362 B =11576.997465 C =11717.810807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.108 0.892 4 N -0.714 5.714 5 C 0.517 3.483 6 O -0.532 6.532 7 C -0.132 4.132 8 C -0.051 4.051 9 C -0.155 4.155 10 C -0.142 4.142 11 C -0.153 4.153 12 C 0.520 3.480 13 O -0.553 6.553 14 N -0.601 5.601 15 C 0.091 3.909 16 C -0.136 4.136 17 C 0.249 3.751 18 O -0.587 6.587 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.122 3.878 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.409 0.591 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.387 0.613 48 H 0.270 0.730 49 H 0.073 0.927 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -1.838 -19.516 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.126 0.874 4 N -0.368 5.368 5 C 0.304 3.696 6 O -0.410 6.410 7 C -0.172 4.172 8 C -0.052 4.052 9 C -0.212 4.212 10 C -0.199 4.199 11 C -0.210 4.210 12 C 0.307 3.693 13 O -0.433 6.433 14 N -0.332 5.332 15 C -0.032 4.032 16 C -0.175 4.175 17 C 0.208 3.792 18 O -0.397 6.397 19 C -0.574 4.574 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C 0.001 3.999 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.245 0.755 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.239 0.761 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.250 -1.913 -19.981 20.199 hybrid contribution -0.278 -0.353 1.448 1.516 sum -2.528 -2.266 -18.533 18.841 Atomic orbital electron populations 1.22067 0.92799 1.03121 1.03409 1.20729 0.95806 0.97860 0.83508 0.87445 1.45915 1.67351 1.14848 1.08704 1.20697 0.77239 0.87365 0.84277 1.90575 1.49940 1.15920 1.84526 1.21789 1.03109 0.99469 0.92847 1.20268 0.96939 0.94855 0.93090 1.22119 0.98019 0.97743 1.03276 1.21898 1.00819 1.00158 0.97066 1.22105 0.95051 1.00706 1.03154 1.20087 0.78541 0.86941 0.83769 1.90651 1.52957 1.15112 1.84557 1.48598 1.59998 1.13171 1.11482 1.22654 0.99119 0.81413 0.99995 1.23365 1.01294 1.02960 0.89885 1.19425 0.81387 0.86901 0.91483 1.86094 1.35662 1.53065 1.64920 1.21492 1.47982 0.95195 0.92766 0.91728 1.24991 0.93765 0.94730 0.99528 1.69558 1.49275 1.02921 1.31969 0.86444 0.79185 0.78609 0.82576 1.19967 1.21064 1.20037 1.22140 0.97687 0.97688 0.82433 0.90953 0.91722 0.90822 0.75459 0.88811 0.88876 0.93534 0.93140 0.89632 0.92732 0.92415 0.92675 0.89701 0.93152 0.93619 0.91549 0.91793 0.91291 0.89480 0.76091 0.91960 0.90827 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.39 37.16 0.35 -1.56 16 2 C 0.13 1.82 2.29 -69.08 -0.16 1.66 16 3 H 0.11 1.57 6.94 -51.93 -0.36 1.21 16 4 N -0.71 -8.81 5.06 -54.93 -0.28 -9.09 16 5 C 0.52 6.08 7.21 -10.98 -0.08 6.00 16 6 O -0.53 -7.49 11.01 5.56 0.06 -7.43 16 7 C -0.13 -1.15 4.77 -27.88 -0.13 -1.28 16 8 C -0.05 -0.45 0.77 -154.51 -0.12 -0.57 16 9 C -0.15 -1.55 8.18 37.16 0.30 -1.25 16 10 C -0.14 -1.01 8.47 37.16 0.31 -0.69 16 11 C -0.15 -1.45 8.18 37.16 0.30 -1.15 16 12 C 0.52 9.14 7.04 -10.99 -0.08 9.07 16 13 O -0.55 -11.00 16.37 5.55 0.09 -10.91 16 14 N -0.60 -11.36 3.32 -170.38 -0.57 -11.92 16 15 C 0.09 1.58 6.26 -2.41 -0.02 1.57 16 16 C -0.14 -2.83 5.69 -24.46 -0.14 -2.96 16 17 C 0.25 5.82 0.85 -89.94 -0.08 5.74 16 18 O -0.59 -14.50 13.08 -35.23 -0.46 -14.96 16 19 C -0.54 -13.64 8.22 -34.44 -0.28 -13.92 16 20 H 0.06 1.64 7.53 -52.48 -0.40 1.25 16 21 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 22 N -0.90 -22.53 10.70 55.43 0.59 -21.94 16 23 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.12 2.66 6.22 -3.06 -0.02 2.64 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.89 6.99 -51.93 -0.36 0.52 16 31 H 0.41 4.76 7.81 -40.82 -0.32 4.44 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.06 5.50 -51.93 -0.29 0.78 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.99 5.52 -51.93 -0.29 0.71 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 45 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 46 H 0.09 1.88 7.77 -51.93 -0.40 1.48 16 47 H 0.39 9.66 6.98 45.56 0.32 9.98 16 48 H 0.27 6.53 8.31 -40.82 -0.34 6.20 16 49 H 0.07 1.63 7.63 -51.93 -0.40 1.23 16 50 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -27.79 390.60 -7.49 -35.28 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -7.88 Total: 15.25 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 0.08 Total: 5.01 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.25 Total: -42.95 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.31 Total: -33.29 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.79 -7.49 -35.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.991 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds