Wall clock time and date at job start Fri Apr 10 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 N 1.46497 * 109.46966 * 239.99889 * 2 1 3 5 5 C 1.34779 * 119.99747 * 85.00286 * 4 2 1 6 6 O 1.21277 * 120.00043 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99919 * 179.72174 * 5 4 2 8 8 C 1.52993 * 109.47211 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47159 * 60.00184 * 8 7 5 10 10 C 1.52999 * 109.47156 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.47119 * 299.99908 * 8 7 5 12 12 C 1.50700 * 109.47101 * 119.99995 * 2 1 3 13 13 O 1.21283 * 120.00158 * 93.04996 * 12 2 1 14 14 N 1.34772 * 120.00115 * 273.05333 * 12 2 1 15 15 C 1.47420 * 125.64836 * 4.63280 * 14 12 2 16 16 C 1.55133 * 104.72438 * 155.82281 * 15 14 12 17 17 C 1.55154 * 101.48285 * 37.29355 * 16 15 14 18 18 O 1.42898 * 110.71909 * 82.70153 * 17 16 15 19 19 C 1.50701 * 110.87326 * 205.89679 * 17 16 15 20 20 H 1.08005 * 119.99835 * 113.61430 * 19 17 16 21 21 C 1.37877 * 120.00383 * 293.61789 * 19 17 16 22 22 N 1.31511 * 119.99818 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00095 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47326 * 59.99704 * 23 21 19 25 25 H 1.48506 * 109.47189 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47126 * 299.99757 * 23 21 19 27 27 C 1.47025 * 125.64724 * 184.94770 * 14 12 2 28 28 H 1.08993 * 109.47002 * 57.42369 * 1 2 3 29 29 H 1.09003 * 109.46666 * 177.42010 * 1 2 3 30 30 H 1.09000 * 109.47108 * 297.41848 * 1 2 3 31 31 H 0.97001 * 120.00053 * 264.99649 * 4 2 1 32 32 H 1.08994 * 109.47054 * 300.00161 * 7 5 4 33 33 H 1.09002 * 109.46904 * 60.00028 * 7 5 4 34 34 H 1.08994 * 109.46989 * 59.99705 * 9 8 7 35 35 H 1.09004 * 109.47323 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.46762 * 299.99737 * 9 8 7 37 37 H 1.09002 * 109.46947 * 60.00240 * 10 8 7 38 38 H 1.09001 * 109.47329 * 179.97438 * 10 8 7 39 39 H 1.08991 * 109.47437 * 299.99968 * 10 8 7 40 40 H 1.09000 * 109.46834 * 60.00216 * 11 8 7 41 41 H 1.09004 * 109.47278 * 179.97438 * 11 8 7 42 42 H 1.08995 * 109.47141 * 300.00009 * 11 8 7 43 43 H 1.08998 * 110.36860 * 274.75204 * 15 14 12 44 44 H 1.09002 * 110.36606 * 37.07813 * 15 14 12 45 45 H 1.09005 * 111.18911 * 279.19546 * 16 15 14 46 46 H 1.08991 * 110.93964 * 155.29172 * 16 15 14 47 47 H 0.96705 * 114.00557 * 66.47081 * 18 17 16 48 48 H 0.97004 * 120.00256 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.88436 * 300.43553 * 27 14 12 50 50 H 1.08999 * 109.88232 * 61.44845 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1584 -2.4116 7 6 2.6553 -0.7271 -3.5861 8 6 2.7050 0.2555 -4.7577 9 6 3.6431 1.4138 -4.4125 10 6 3.2204 -0.4643 -6.0055 11 6 1.3005 0.7995 -5.0270 12 6 2.0324 -0.7104 1.2305 13 8 2.2872 -1.8953 1.1851 14 7 2.1984 -0.0291 2.3814 15 6 1.8385 1.3832 2.6034 16 6 1.6283 1.5003 4.1359 17 6 2.7394 0.5598 4.6728 18 8 3.9950 1.2398 4.7265 19 6 2.3723 0.0145 6.0289 20 1 2.1773 -1.0407 6.1519 21 6 2.2854 0.8625 7.1126 22 7 2.5233 2.1472 6.9629 23 14 1.8297 0.1866 8.7933 24 1 2.8342 -0.8249 9.2091 25 1 1.8048 1.2943 9.7822 26 1 0.4883 -0.4469 8.7250 27 6 2.7745 -0.5694 3.6215 28 1 -0.3633 0.5533 -0.8659 29 1 -0.3633 -1.0267 -0.0463 30 1 -0.3633 0.4732 0.9122 31 1 2.2491 -1.6318 -1.1526 32 1 3.6556 -1.1150 -3.3941 33 1 1.9867 -1.5520 -3.8322 34 1 4.6436 1.0262 -4.2207 35 1 3.6781 2.1141 -5.2471 36 1 3.2754 1.9265 -3.5237 37 1 2.5516 -1.2893 -6.2513 38 1 3.2553 0.2356 -6.8404 39 1 4.2208 -0.8522 -5.8141 40 1 0.9329 1.3122 -4.1381 41 1 1.3359 1.4999 -5.8614 42 1 0.6322 -0.0257 -5.2729 43 1 2.6480 2.0366 2.2781 44 1 0.9170 1.6274 2.0748 45 1 0.6402 1.1433 4.4265 46 1 1.7864 2.5244 4.4736 47 1 4.0256 1.9591 5.3722 48 1 2.4625 2.7439 7.7253 49 1 2.1819 -1.4164 3.9673 50 1 3.8032 -0.8839 3.4461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:51 Heat of formation + Delta-G solvation = -154.888103 kcal Electronic energy + Delta-G solvation = -29065.897432 eV Core-core repulsion = 25091.756341 eV Total energy + Delta-G solvation = -3974.141092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70651 -40.81245 -39.15937 -37.60050 -36.20094 -35.86890 -34.15412 -32.55063 -31.26240 -30.05502 -28.92927 -28.05871 -27.98303 -27.28353 -25.34175 -23.73370 -21.87794 -21.36663 -20.65518 -19.76602 -19.20114 -18.62225 -17.58235 -17.42542 -16.98512 -16.79685 -16.33356 -16.05840 -15.95187 -15.51812 -15.25576 -15.20097 -15.04701 -14.82141 -14.24901 -13.89734 -13.78715 -13.73161 -13.49161 -13.25350 -13.20355 -13.06542 -13.01443 -12.89463 -12.74237 -12.66125 -12.62876 -12.43013 -12.29808 -12.18165 -12.01346 -11.99018 -11.60580 -11.50076 -11.31846 -11.01089 -10.63925 -10.48275 -10.20435 -10.12395 -9.71771 -8.26314 -6.40455 1.32836 1.42996 1.45152 1.51829 1.63943 1.74417 2.32196 2.40223 2.98981 3.27632 3.71136 3.82580 3.86263 3.93699 3.96685 4.02466 4.03783 4.22458 4.31798 4.34597 4.52490 4.58533 4.61430 4.64403 4.67284 4.70634 4.73116 4.86839 4.88308 4.90516 5.02687 5.10618 5.12778 5.13024 5.14983 5.21248 5.22175 5.36630 5.41703 5.43413 5.49997 5.57671 5.70539 5.75344 6.03804 6.45667 6.50441 6.62836 6.92241 7.24711 7.30369 7.43131 8.79905 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.002418 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.871362 B =11576.997465 C =11717.810807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 H 0.105 0.895 4 N -0.714 5.714 5 C 0.515 3.485 6 O -0.556 6.556 7 C -0.128 4.128 8 C -0.052 4.052 9 C -0.153 4.153 10 C -0.137 4.137 11 C -0.150 4.150 12 C 0.520 3.480 13 O -0.577 6.577 14 N -0.605 5.605 15 C 0.100 3.900 16 C -0.127 4.127 17 C 0.235 3.765 18 O -0.595 6.595 19 C -0.562 4.562 20 H 0.055 0.945 21 C 0.037 3.963 22 N -0.908 5.908 23 Si 0.960 3.040 24 H -0.278 1.278 25 H -0.279 1.279 26 H -0.272 1.272 27 C 0.129 3.871 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.413 0.587 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.383 0.617 48 H 0.273 0.727 49 H 0.064 0.936 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -2.248 -21.048 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 H 0.123 0.877 4 N -0.369 5.369 5 C 0.304 3.696 6 O -0.434 6.434 7 C -0.168 4.168 8 C -0.052 4.052 9 C -0.210 4.210 10 C -0.195 4.195 11 C -0.207 4.207 12 C 0.309 3.691 13 O -0.458 6.458 14 N -0.337 5.337 15 C -0.021 4.021 16 C -0.166 4.166 17 C 0.195 3.805 18 O -0.406 6.406 19 C -0.600 4.600 20 H 0.073 0.927 21 C -0.165 4.165 22 N -0.548 5.548 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.204 1.204 26 H -0.197 1.197 27 C 0.007 3.993 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.234 0.766 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.960 -2.321 -21.541 21.867 hybrid contribution -0.022 -0.225 1.913 1.927 sum -2.982 -2.547 -19.628 20.015 Atomic orbital electron populations 1.22035 0.91130 1.03521 1.04020 1.20619 0.96886 0.97133 0.82354 0.87717 1.45959 1.67559 1.15015 1.08338 1.21277 0.76530 0.87145 0.84686 1.90587 1.50873 1.17101 1.84880 1.21862 1.04231 0.99676 0.91011 1.20298 0.96276 0.94604 0.94061 1.22080 0.98458 0.98277 1.02214 1.21851 1.01354 1.00331 0.95938 1.22052 0.95643 1.00980 1.02069 1.20740 0.77529 0.86711 0.84124 1.90635 1.53799 1.16362 1.84966 1.48620 1.60277 1.13678 1.11106 1.22630 1.00943 0.80642 0.97927 1.23152 0.99850 1.01479 0.92147 1.19595 0.81623 0.87881 0.91420 1.86080 1.36745 1.53015 1.64721 1.21718 1.48971 0.94995 0.94327 0.92722 1.25597 0.93637 0.95054 1.02189 1.69618 1.49045 1.03382 1.32706 0.85585 0.78738 0.78009 0.79129 1.20317 1.20386 1.19732 1.21846 0.96834 0.97048 0.83622 0.90056 0.91475 0.90410 0.74972 0.87415 0.86609 0.93100 0.92782 0.92239 0.91579 0.92229 0.92019 0.92098 0.92908 0.92512 0.91193 0.88229 0.91814 0.90500 0.76553 0.91738 0.91758 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.39 71.98 0.68 -2.66 16 2 C 0.14 3.69 2.29 44.25 0.10 3.79 16 3 H 0.10 2.90 6.94 -2.39 -0.02 2.88 16 4 N -0.71 -16.51 5.06 -446.09 -2.26 -18.76 16 5 C 0.51 11.30 7.21 87.66 0.63 11.93 16 6 O -0.56 -15.16 11.01 -3.02 -0.03 -15.19 16 7 C -0.13 -1.91 4.77 29.85 0.14 -1.77 16 8 C -0.05 -0.81 0.77 -52.18 -0.04 -0.85 16 9 C -0.15 -2.91 8.18 71.98 0.59 -2.32 16 10 C -0.14 -1.56 8.47 71.98 0.61 -0.95 16 11 C -0.15 -2.60 8.18 71.98 0.59 -2.02 16 12 C 0.52 17.86 7.04 87.66 0.62 18.47 16 13 O -0.58 -22.64 16.37 -3.04 -0.05 -22.69 16 14 N -0.60 -22.58 3.32 -811.36 -2.70 -25.28 16 15 C 0.10 3.39 6.26 86.93 0.54 3.93 16 16 C -0.13 -5.27 5.69 32.06 0.18 -5.09 16 17 C 0.23 11.16 0.85 -10.35 -0.01 11.16 16 18 O -0.60 -29.94 13.08 -148.98 -1.95 -31.89 16 19 C -0.56 -29.04 8.22 25.60 0.21 -28.83 16 20 H 0.05 2.85 7.53 -2.91 -0.02 2.83 16 21 C 0.04 1.83 5.28 84.66 0.45 2.28 16 22 N -0.91 -45.60 10.70 21.45 0.23 -45.38 16 23 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.13 5.73 6.22 86.73 0.54 6.27 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.68 6.99 -2.39 -0.02 1.67 16 31 H 0.41 8.95 7.81 -92.71 -0.72 8.23 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.46 5.50 -2.39 -0.01 1.45 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 1.38 5.52 -2.39 -0.01 1.36 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.10 2.67 6.56 -2.39 -0.02 2.66 16 45 H 0.06 2.67 8.05 -2.38 -0.02 2.65 16 46 H 0.08 3.32 7.77 -2.39 -0.02 3.30 16 47 H 0.38 19.49 6.98 -74.05 -0.52 18.98 16 48 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 49 H 0.06 2.93 7.63 -2.39 -0.02 2.91 16 50 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 Total: -1.00 -59.79 390.60 0.81 -58.99 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -0.30 Total: 44.24 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 5.83 Total: 13.35 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -4.72 Total: -89.42 kcal Atomic # 8 Polarization: -67.74 SS G_CDS: -2.03 Total: -69.77 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -59.79 0.81 -58.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.899 kcal (2) G-P(sol) polarization free energy of solvation -59.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds