Wall clock time and date at job start Fri Apr 10 2020 18:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47579 * 239.99962 * 2 1 3 5 5 O 1.42897 * 109.47025 * 304.99994 * 4 2 1 6 6 C 1.42901 * 114.00196 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52993 * 117.49563 * 243.74351 * 7 6 5 9 9 C 1.53003 * 117.49437 * 175.08771 * 7 6 5 10 10 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 11 11 C 1.34773 * 120.00432 * 275.00011 * 10 2 1 12 12 O 1.21353 * 120.00047 * 0.02562 * 11 10 2 13 13 C 1.49454 * 120.00135 * 179.72278 * 11 10 2 14 14 O 1.21343 * 119.99752 * 0.28157 * 13 11 10 15 15 N 1.34777 * 120.00164 * 180.27489 * 13 11 10 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 11 17 17 C 1.53003 * 109.46671 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47138 * 299.99821 * 17 16 15 19 19 C 1.52996 * 109.47476 * 60.00190 * 17 16 15 20 20 C 1.50700 * 109.46681 * 180.02562 * 17 16 15 21 21 H 1.08001 * 120.00300 * 359.97438 * 20 17 16 22 22 C 1.37880 * 120.00286 * 179.97438 * 20 17 16 23 23 N 1.31514 * 119.99512 * 0.02562 * 22 20 17 24 24 Si 1.86795 * 120.00323 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47012 * 119.99855 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00040 * 24 22 20 28 28 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 29 29 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 30 30 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46915 * 65.00142 * 4 2 1 32 32 H 1.09001 * 109.47271 * 185.00176 * 4 2 1 33 33 H 1.09002 * 109.47044 * 299.99852 * 6 5 4 34 34 H 1.09000 * 109.47199 * 59.99846 * 6 5 4 35 35 H 1.08996 * 115.55097 * 29.42096 * 7 6 5 36 36 H 1.08997 * 117.50046 * 0.02562 * 8 7 6 37 37 H 1.09005 * 117.49369 * 145.02239 * 8 7 6 38 38 H 1.09005 * 117.49602 * 214.97825 * 9 7 6 39 39 H 1.08996 * 117.49862 * 0.02562 * 9 7 6 40 40 H 0.97001 * 119.99454 * 95.00746 * 10 2 1 41 41 H 0.97000 * 119.99555 * 0.02562 * 15 13 11 42 42 H 1.08994 * 109.46952 * 300.00262 * 16 15 13 43 43 H 1.08992 * 109.46844 * 60.00609 * 16 15 13 44 44 H 1.08996 * 109.47009 * 60.00738 * 18 17 16 45 45 H 1.08998 * 109.46579 * 180.02562 * 18 17 16 46 46 H 1.08998 * 109.47126 * 299.99999 * 18 17 16 47 47 H 1.09008 * 109.47160 * 59.99385 * 19 17 16 48 48 H 1.08998 * 109.47329 * 179.97438 * 19 17 16 49 49 H 1.09005 * 109.47173 * 299.99899 * 19 17 16 50 50 H 0.96999 * 119.99804 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4704 -2.0303 -1.3094 6 6 1.8838 -2.7925 -2.4452 7 6 1.2155 -4.1683 -2.4069 8 6 2.1238 -5.3911 -2.2641 9 6 1.4410 -5.0967 -3.6021 10 7 2.0183 -0.6905 1.1962 11 6 2.1470 -0.0182 2.3572 12 8 1.8580 1.1591 2.4118 13 6 2.6393 -0.7242 3.5790 14 8 2.9279 -1.9016 3.5245 15 7 2.7627 -0.0532 4.7413 16 6 3.2458 -0.7452 5.9388 17 6 3.2913 0.2365 7.1115 18 6 4.2364 1.3913 6.7736 19 6 1.8873 0.7860 7.3715 20 6 3.7888 -0.4751 8.3432 21 1 4.0463 -1.5228 8.2946 22 6 3.9152 0.2113 9.5323 23 7 3.6011 1.4871 9.5916 24 14 4.5312 -0.6709 11.0592 25 1 4.8134 -2.0912 10.7303 26 1 5.7754 -0.0181 11.5400 27 1 3.4952 -0.6046 12.1211 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7518 -0.1582 -2.1370 32 1 3.1264 -0.7994 -1.2055 33 1 1.5918 -2.2725 -3.3576 34 1 2.9669 -2.9137 -2.4268 35 1 0.2419 -4.2046 -1.9181 36 1 3.1974 -5.2155 -2.1970 37 1 1.7476 -6.2321 -1.6815 38 1 0.6158 -5.7441 -3.8992 39 1 2.0658 -4.7275 -4.4153 40 1 2.2490 -1.6317 1.1526 41 1 2.5317 0.8879 4.7849 42 1 2.5723 -1.5675 6.1798 43 1 4.2459 -1.1369 5.7535 44 1 3.8769 1.9061 5.8826 45 1 4.2691 2.0904 7.6092 46 1 5.2367 0.9998 6.5884 47 1 1.2139 -0.0367 7.6122 48 1 1.9196 1.4850 8.2072 49 1 1.5278 1.3008 6.4805 50 1 3.6904 1.9701 10.4280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593932581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:04 Heat of formation + Delta-G solvation = -103.975670 kcal Electronic energy + Delta-G solvation = -27861.019441 eV Core-core repulsion = 23889.086078 eV Total energy + Delta-G solvation = -3971.933363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46128 -39.07172 -38.31628 -37.15971 -36.44721 -35.28295 -33.30626 -31.25227 -30.86888 -27.94090 -26.46361 -26.11074 -25.70653 -25.26683 -23.62309 -22.78708 -21.31031 -20.90963 -20.17264 -18.98278 -18.20908 -17.44938 -16.63269 -16.33000 -16.16016 -15.71351 -15.56714 -15.03903 -14.97716 -14.71683 -14.48320 -14.17182 -13.77080 -13.50015 -13.46778 -12.92106 -12.76693 -12.69882 -12.45784 -12.20265 -11.97071 -11.89972 -11.50109 -11.38706 -11.36369 -11.30303 -11.16261 -10.88266 -10.81587 -10.66324 -10.65114 -10.38725 -10.18978 -9.91092 -9.63740 -9.51170 -9.30178 -9.18214 -8.77849 -8.56958 -8.36085 -6.01689 -4.12206 1.70441 2.60716 3.03614 3.27625 3.36270 3.40530 3.45799 3.53447 3.97820 4.31834 4.40198 4.45986 4.48421 4.62895 4.73528 4.85498 4.87549 4.92393 5.06562 5.14492 5.18445 5.22261 5.24969 5.30121 5.49781 5.51581 5.69432 5.74413 5.78780 6.09839 6.13850 6.25896 6.26211 6.49061 6.66421 6.76818 6.85359 6.86902 6.96224 7.02065 7.18873 7.35310 7.56634 7.69283 7.76890 8.01554 8.01793 8.14791 8.35175 8.44484 8.88268 9.53567 10.99745 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.002120 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.464384 B =13206.137019 C =14176.686786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.104 0.896 4 C 0.054 3.946 5 O -0.379 6.379 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.176 4.176 9 C -0.175 4.175 10 N -0.698 5.698 11 C 0.509 3.491 12 O -0.523 6.523 13 C 0.495 3.505 14 O -0.534 6.534 15 N -0.681 5.681 16 C 0.128 3.872 17 C 0.055 3.945 18 C -0.133 4.133 19 C -0.133 4.133 20 C -0.505 4.505 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.894 3.106 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.417 0.583 41 H 0.410 0.590 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.008 0.992 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.087 0.913 49 H 0.009 0.991 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -5.656 -25.610 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.121 0.879 4 C -0.023 4.023 5 O -0.299 6.299 6 C 0.018 3.982 7 C -0.172 4.172 8 C -0.213 4.213 9 C -0.212 4.212 10 N -0.352 5.352 11 C 0.290 3.710 12 O -0.399 6.399 13 C 0.274 3.726 14 O -0.412 6.412 15 N -0.333 5.333 16 C 0.006 3.994 17 C 0.054 3.946 18 C -0.191 4.191 19 C -0.191 4.191 20 C -0.544 4.544 21 H 0.077 0.923 22 C -0.136 4.136 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.253 0.747 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.027 0.973 45 H 0.105 0.895 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.105 0.895 49 H 0.027 0.973 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.506 -5.557 -25.306 26.298 hybrid contribution 0.503 -0.358 0.617 0.873 sum -4.003 -5.915 -24.689 25.701 Atomic orbital electron populations 1.22089 0.94141 1.03209 1.02445 1.21120 0.95560 0.96732 0.82497 0.87852 1.22821 0.97698 0.84274 0.97550 1.87899 1.70232 1.26127 1.45619 1.22002 0.97497 0.90339 0.88408 1.22134 1.01522 0.90170 1.03398 1.23096 0.98853 0.99522 0.99838 1.22986 1.03624 1.02754 0.91874 1.45794 1.65633 1.15233 1.08561 1.20501 0.78607 0.87006 0.84927 1.90744 1.48662 1.15525 1.84930 1.19977 0.80592 0.87195 0.84800 1.90726 1.49991 1.15352 1.85174 1.46216 1.62831 1.15170 1.09047 1.21933 0.98268 0.96264 0.82915 1.18393 0.93486 0.91829 0.90876 1.21850 0.97728 1.00090 0.99414 1.21852 0.96545 1.00520 1.00174 1.20988 1.43918 0.96304 0.93189 0.92303 1.24894 0.95110 0.94878 0.98721 1.69819 1.48281 1.07953 1.26203 0.86499 0.78408 0.79918 0.82949 1.19764 1.21084 1.21069 0.91873 0.91663 0.91236 0.91481 0.92307 0.92885 0.93064 0.86758 0.88576 0.88455 0.88400 0.88738 0.74664 0.75218 0.92025 0.92034 0.97259 0.89452 0.95370 0.95357 0.89456 0.97251 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.29 37.16 0.35 -1.20 16 2 C 0.15 1.42 2.98 -67.93 -0.20 1.22 16 3 H 0.10 1.03 7.58 -51.92 -0.39 0.64 16 4 C 0.05 0.40 5.68 37.16 0.21 0.62 16 5 O -0.38 -3.34 9.19 -35.23 -0.32 -3.67 16 6 C 0.09 0.66 6.22 37.16 0.23 0.89 16 7 C -0.15 -1.10 6.06 -90.62 -0.55 -1.64 16 8 C -0.18 -1.17 10.18 -26.70 -0.27 -1.45 16 9 C -0.18 -0.99 10.25 -26.69 -0.27 -1.26 16 10 N -0.70 -8.66 5.05 -54.23 -0.27 -8.94 16 11 C 0.51 7.95 7.85 -11.59 -0.09 7.86 16 12 O -0.52 -9.01 16.14 5.49 0.09 -8.92 16 13 C 0.49 8.91 7.89 -11.58 -0.09 8.81 16 14 O -0.53 -10.53 16.48 5.50 0.09 -10.44 16 15 N -0.68 -12.88 4.95 -60.73 -0.30 -13.18 16 16 C 0.13 2.72 4.50 -4.04 -0.02 2.70 16 17 C 0.05 1.28 0.50 -155.66 -0.08 1.21 16 18 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 19 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 20 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 23 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 24 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.71 7.56 -51.93 -0.39 0.31 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.33 7.88 -51.93 -0.41 -0.08 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.42 5.10 7.85 -40.82 -0.32 4.78 16 41 H 0.41 7.63 5.63 -40.82 -0.23 7.40 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 45 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 48 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 49 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 50 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -28.80 405.04 -8.22 -37.01 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.54 Total: 9.11 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.56 Total: 0.38 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.06 Total: -45.27 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.14 Total: -23.02 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.80 -8.22 -37.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.961 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds