Wall clock time and date at job start Fri Apr 10 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47579 * 239.99962 * 2 1 3 5 5 O 1.42897 * 109.47025 * 304.99994 * 4 2 1 6 6 C 1.42901 * 114.00196 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52993 * 117.49563 * 243.74351 * 7 6 5 9 9 C 1.53003 * 117.49437 * 175.08771 * 7 6 5 10 10 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 11 11 C 1.34773 * 120.00432 * 275.00011 * 10 2 1 12 12 O 1.21353 * 120.00047 * 0.02562 * 11 10 2 13 13 C 1.49454 * 120.00135 * 179.72278 * 11 10 2 14 14 O 1.21343 * 119.99752 * 0.28157 * 13 11 10 15 15 N 1.34777 * 120.00164 * 180.27489 * 13 11 10 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 11 17 17 C 1.53003 * 109.46671 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47138 * 299.99821 * 17 16 15 19 19 C 1.52996 * 109.47476 * 60.00190 * 17 16 15 20 20 C 1.50700 * 109.46681 * 180.02562 * 17 16 15 21 21 H 1.08001 * 120.00300 * 359.97438 * 20 17 16 22 22 C 1.37880 * 120.00286 * 179.97438 * 20 17 16 23 23 N 1.31514 * 119.99512 * 0.02562 * 22 20 17 24 24 Si 1.86795 * 120.00323 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47012 * 119.99855 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00040 * 24 22 20 28 28 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 29 29 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 30 30 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46915 * 65.00142 * 4 2 1 32 32 H 1.09001 * 109.47271 * 185.00176 * 4 2 1 33 33 H 1.09002 * 109.47044 * 299.99852 * 6 5 4 34 34 H 1.09000 * 109.47199 * 59.99846 * 6 5 4 35 35 H 1.08996 * 115.55097 * 29.42096 * 7 6 5 36 36 H 1.08997 * 117.50046 * 0.02562 * 8 7 6 37 37 H 1.09005 * 117.49369 * 145.02239 * 8 7 6 38 38 H 1.09005 * 117.49602 * 214.97825 * 9 7 6 39 39 H 1.08996 * 117.49862 * 0.02562 * 9 7 6 40 40 H 0.97001 * 119.99454 * 95.00746 * 10 2 1 41 41 H 0.97000 * 119.99555 * 0.02562 * 15 13 11 42 42 H 1.08994 * 109.46952 * 300.00262 * 16 15 13 43 43 H 1.08992 * 109.46844 * 60.00609 * 16 15 13 44 44 H 1.08996 * 109.47009 * 60.00738 * 18 17 16 45 45 H 1.08998 * 109.46579 * 180.02562 * 18 17 16 46 46 H 1.08998 * 109.47126 * 299.99999 * 18 17 16 47 47 H 1.09008 * 109.47160 * 59.99385 * 19 17 16 48 48 H 1.08998 * 109.47329 * 179.97438 * 19 17 16 49 49 H 1.09005 * 109.47173 * 299.99899 * 19 17 16 50 50 H 0.96999 * 119.99804 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4704 -2.0303 -1.3094 6 6 1.8838 -2.7925 -2.4452 7 6 1.2155 -4.1683 -2.4069 8 6 2.1238 -5.3911 -2.2641 9 6 1.4410 -5.0967 -3.6021 10 7 2.0183 -0.6905 1.1962 11 6 2.1470 -0.0182 2.3572 12 8 1.8580 1.1591 2.4118 13 6 2.6393 -0.7242 3.5790 14 8 2.9279 -1.9016 3.5245 15 7 2.7627 -0.0532 4.7413 16 6 3.2458 -0.7452 5.9388 17 6 3.2913 0.2365 7.1115 18 6 4.2364 1.3913 6.7736 19 6 1.8873 0.7860 7.3715 20 6 3.7888 -0.4751 8.3432 21 1 4.0463 -1.5228 8.2946 22 6 3.9152 0.2113 9.5323 23 7 3.6011 1.4871 9.5916 24 14 4.5312 -0.6709 11.0592 25 1 4.8134 -2.0912 10.7303 26 1 5.7754 -0.0181 11.5400 27 1 3.4952 -0.6046 12.1211 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7518 -0.1582 -2.1370 32 1 3.1264 -0.7994 -1.2055 33 1 1.5918 -2.2725 -3.3576 34 1 2.9669 -2.9137 -2.4268 35 1 0.2419 -4.2046 -1.9181 36 1 3.1974 -5.2155 -2.1970 37 1 1.7476 -6.2321 -1.6815 38 1 0.6158 -5.7441 -3.8992 39 1 2.0658 -4.7275 -4.4153 40 1 2.2490 -1.6317 1.1526 41 1 2.5317 0.8879 4.7849 42 1 2.5723 -1.5675 6.1798 43 1 4.2459 -1.1369 5.7535 44 1 3.8769 1.9061 5.8826 45 1 4.2691 2.0904 7.6092 46 1 5.2367 0.9998 6.5884 47 1 1.2139 -0.0367 7.6122 48 1 1.9196 1.4850 8.2072 49 1 1.5278 1.3008 6.4805 50 1 3.6904 1.9701 10.4280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593932581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:03 Heat of formation + Delta-G solvation = -121.767621 kcal Electronic energy + Delta-G solvation = -27861.790958 eV Core-core repulsion = 23889.086078 eV Total energy + Delta-G solvation = -3972.704880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75913 -40.05344 -39.32725 -38.19312 -37.81574 -36.22712 -35.00669 -32.74694 -32.19854 -28.52287 -27.96227 -27.58827 -27.23985 -26.83334 -25.01923 -23.24690 -22.18344 -21.55009 -21.42288 -20.71375 -19.65602 -18.26556 -17.88763 -17.53522 -17.06034 -17.02183 -16.76890 -16.58351 -16.25812 -15.67322 -15.51511 -15.34242 -15.00680 -14.76784 -14.52586 -14.41741 -14.09547 -14.04971 -13.34201 -13.27914 -13.21610 -13.13853 -12.80570 -12.71209 -12.59831 -12.55495 -12.38283 -12.28146 -12.12199 -12.10014 -11.95773 -11.51031 -11.31380 -11.30179 -11.17383 -10.76161 -10.62608 -10.42694 -10.41525 -10.33698 -10.12084 -8.01543 -6.17799 0.35689 1.36080 1.43034 1.47451 1.56751 2.15262 2.44769 2.49090 2.73703 2.97111 3.22216 3.46908 3.70820 3.91805 3.97829 4.03627 4.14297 4.34433 4.36321 4.38274 4.46006 4.46930 4.52531 4.62297 4.67728 4.73047 4.77078 4.79098 4.92415 4.93557 5.03015 5.03931 5.06177 5.17085 5.21963 5.23646 5.24520 5.26060 5.36359 5.48103 5.64671 5.67884 5.96295 6.11156 6.18852 6.23272 6.39877 6.41754 6.75041 6.86690 6.97650 7.49983 8.97920 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.002120 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.464384 B =13206.137019 C =14176.686786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.106 0.894 4 C 0.058 3.942 5 O -0.399 6.399 6 C 0.093 3.907 7 C -0.167 4.167 8 C -0.187 4.187 9 C -0.161 4.161 10 N -0.682 5.682 11 C 0.515 3.485 12 O -0.540 6.540 13 C 0.496 3.504 14 O -0.552 6.552 15 N -0.681 5.681 16 C 0.143 3.857 17 C 0.049 3.951 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.524 4.524 21 H 0.051 0.949 22 C 0.025 3.975 23 N -0.901 5.901 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.418 0.582 41 H 0.413 0.587 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.064 0.936 49 H 0.029 0.971 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 -5.809 -27.670 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.124 0.876 4 C -0.019 4.019 5 O -0.319 6.319 6 C 0.017 3.983 7 C -0.186 4.186 8 C -0.224 4.224 9 C -0.198 4.198 10 N -0.335 5.335 11 C 0.295 3.705 12 O -0.418 6.418 13 C 0.276 3.724 14 O -0.431 6.431 15 N -0.333 5.333 16 C 0.020 3.980 17 C 0.048 3.952 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.562 4.562 21 H 0.069 0.931 22 C -0.175 4.175 23 N -0.539 5.539 24 Si 0.776 3.224 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.255 0.745 41 H 0.251 0.749 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.048 0.952 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.543 -5.721 -27.407 28.364 hybrid contribution 0.484 -0.351 1.186 1.329 sum -4.058 -6.072 -26.221 27.219 Atomic orbital electron populations 1.22036 0.93866 1.02789 1.02623 1.21400 0.95743 0.97029 0.82183 0.87600 1.22831 0.97907 0.84059 0.97088 1.87872 1.70652 1.26741 1.46651 1.22097 0.97735 0.90073 0.88401 1.22167 1.01114 0.90673 1.04621 1.23154 0.98953 0.99381 1.00943 1.23065 1.03518 1.01727 0.91527 1.45855 1.64067 1.15242 1.08378 1.19982 0.78951 0.86648 0.84913 1.90743 1.49924 1.15998 1.85095 1.20408 0.79749 0.86976 0.85247 1.90715 1.50607 1.16234 1.85565 1.46066 1.63194 1.15195 1.08853 1.21548 0.97799 0.95479 0.83178 1.18400 0.93572 0.92237 0.90967 1.21694 0.97563 0.99481 0.99334 1.21700 0.96384 0.99859 1.00161 1.21257 1.44216 0.96202 0.94552 0.93091 1.25512 0.95429 0.95543 1.01017 1.69933 1.48643 1.08713 1.26645 0.85643 0.77832 0.78913 0.80021 1.19674 1.20878 1.20916 0.93937 0.89227 0.91897 0.88743 0.91678 0.91322 0.92588 0.87960 0.88419 0.88806 0.87746 0.87488 0.74454 0.74888 0.92860 0.92721 0.95135 0.91771 0.95747 0.95831 0.91753 0.95167 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.29 71.98 0.67 -2.06 16 2 C 0.14 2.46 2.98 44.99 0.13 2.59 16 3 H 0.11 1.88 7.58 -2.38 -0.02 1.86 16 4 C 0.06 0.72 5.68 71.98 0.41 1.13 16 5 O -0.40 -6.24 9.19 -148.98 -1.37 -7.61 16 6 C 0.09 1.10 6.22 71.98 0.45 1.55 16 7 C -0.17 -2.18 6.06 -10.79 -0.07 -2.25 16 8 C -0.19 -2.32 10.18 30.62 0.31 -2.01 16 9 C -0.16 -1.54 10.25 30.62 0.31 -1.22 16 10 N -0.68 -16.04 5.05 -443.86 -2.24 -18.28 16 11 C 0.51 15.56 7.85 87.27 0.69 16.24 16 12 O -0.54 -17.99 16.14 -3.26 -0.05 -18.05 16 13 C 0.50 17.50 7.89 87.27 0.69 18.18 16 14 O -0.55 -21.48 16.48 -3.23 -0.05 -21.54 16 15 N -0.68 -25.33 4.95 -464.43 -2.30 -27.63 16 16 C 0.14 6.04 4.50 86.38 0.39 6.43 16 17 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 18 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 19 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 20 C -0.52 -27.47 8.01 25.60 0.21 -27.26 16 21 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 22 C 0.02 1.30 5.15 84.66 0.44 1.73 16 23 N -0.90 -48.50 9.35 21.45 0.20 -48.30 16 24 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.19 7.56 -2.39 -0.02 1.18 16 31 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.60 7.88 -2.39 -0.02 0.59 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.15 8.03 -2.39 -0.02 1.13 16 37 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.42 9.74 7.85 -92.71 -0.73 9.01 16 41 H 0.41 14.94 5.63 -92.71 -0.52 14.42 16 42 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 45 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 46 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 49 H 0.03 1.22 6.86 -2.38 -0.02 1.20 16 50 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -60.83 405.04 1.66 -59.17 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.31 Total: 32.46 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.76 Total: 5.19 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -4.34 Total: -94.21 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.48 Total: -47.19 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -60.83 1.66 -59.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.595 kcal (2) G-P(sol) polarization free energy of solvation -60.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds