Wall clock time and date at job start Fri Apr 10 2020 18:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.49364 * 2 1 4 4 C 1.53034 * 109.52548 * 120.08263 * 2 1 3 5 5 C 1.53045 * 109.53740 * 58.60485 * 4 2 1 6 6 C 1.52762 * 109.37991 * 61.24259 * 5 4 2 7 7 N 1.46926 * 109.00550 * 305.58440 * 6 5 4 8 8 C 1.34777 * 120.63193 * 233.58355 * 7 6 5 9 9 O 1.21351 * 120.00368 * 182.92449 * 8 7 6 10 10 C 1.49455 * 119.99687 * 2.93174 * 8 7 6 11 11 O 1.21351 * 120.00261 * 353.65985 * 10 8 7 12 12 N 1.34780 * 119.99791 * 173.66069 * 10 8 7 13 13 C 1.46506 * 119.99724 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46918 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47094 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47202 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00154 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00142 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99883 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47012 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46866 * 299.99198 * 20 18 16 23 23 H 1.48497 * 109.47261 * 59.99560 * 20 18 16 24 24 C 1.46928 * 118.74006 * 53.31459 * 7 6 5 25 25 H 1.09006 * 109.58139 * 66.57092 * 24 7 6 26 26 C 1.52996 * 109.58801 * 186.85311 * 24 7 6 27 27 C 1.52999 * 109.47307 * 178.38694 * 26 24 7 28 28 O 1.42895 * 109.47309 * 174.95532 * 27 26 24 29 29 H 1.09007 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47345 * 300.05757 * 1 2 3 31 31 H 1.08999 * 109.47374 * 60.06493 * 1 2 3 32 32 H 1.09002 * 109.46000 * 178.62423 * 4 2 1 33 33 H 1.08998 * 109.45904 * 298.59826 * 4 2 1 34 34 H 1.08997 * 109.49467 * 181.31416 * 5 4 2 35 35 H 1.08996 * 109.49348 * 301.37908 * 5 4 2 36 36 H 1.09002 * 109.50400 * 185.70918 * 6 5 4 37 37 H 1.08996 * 109.43351 * 65.42647 * 6 5 4 38 38 H 0.96999 * 120.00126 * 359.97438 * 12 10 8 39 39 H 1.08994 * 109.47313 * 60.00052 * 13 12 10 40 40 H 1.08994 * 109.46972 * 299.99720 * 13 12 10 41 41 H 1.09002 * 109.46892 * 60.00100 * 14 13 12 42 42 H 1.09000 * 109.46927 * 300.00079 * 14 13 12 43 43 H 1.09002 * 109.47034 * 60.00352 * 15 14 13 44 44 H 1.09002 * 109.47216 * 300.00428 * 15 14 13 45 45 H 0.97002 * 120.00096 * 0.02562 * 19 18 16 46 46 H 1.09005 * 109.46875 * 298.38805 * 26 24 7 47 47 H 1.08994 * 109.47546 * 58.38407 * 26 24 7 48 48 H 1.08997 * 109.46918 * 294.96354 * 27 26 24 49 49 H 1.09003 * 109.46747 * 54.95625 * 27 26 24 50 50 H 0.96703 * 114.00248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5044 -2.1560 1.2656 6 6 2.0106 -2.9022 0.0326 7 7 1.6523 -2.1378 -1.1699 8 6 0.9748 -2.7217 -2.1782 9 8 0.7311 -2.0950 -3.1884 10 6 0.5236 -4.1409 -2.0521 11 8 0.8647 -4.8032 -1.0941 12 7 -0.2621 -4.6852 -3.0023 13 6 -0.7039 -6.0766 -2.8789 14 6 -1.5771 -6.4429 -4.0807 15 6 -2.0380 -7.8960 -3.9522 16 6 -2.8975 -8.2570 -5.1362 17 1 -3.0950 -7.5234 -5.9039 18 6 -3.4319 -9.5239 -5.2395 19 7 -3.1911 -10.4174 -4.3050 20 14 -4.4968 -9.9715 -6.7076 21 1 -4.9442 -11.3820 -6.5828 22 1 -5.6819 -9.0777 -6.7502 23 1 -3.7103 -9.8108 -7.9569 24 6 2.0413 -0.7233 -1.2498 25 1 3.1274 -0.6454 -1.3011 26 6 1.4222 -0.0908 -2.4978 27 6 1.7958 1.3917 -2.5571 28 8 1.3176 1.9550 -3.7802 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 3.1312 -0.7437 1.2347 33 1 1.6992 -0.1961 2.1388 34 1 1.8500 -2.6629 2.1665 35 1 0.4147 -2.1361 1.2546 36 1 1.5492 -3.8888 -0.0106 37 1 3.0941 -3.0055 0.0907 38 1 -0.5351 -4.1557 -3.7678 39 1 -1.2801 -6.1948 -1.9612 40 1 0.1659 -6.7327 -2.8489 41 1 -1.0005 -6.3247 -4.9982 42 1 -2.4470 -5.7867 -4.1112 43 1 -2.6145 -8.0146 -3.0347 44 1 -1.1679 -8.5519 -3.9219 45 1 -2.6378 -10.1850 -3.5429 46 1 1.7997 -0.5964 -3.3867 47 1 0.3377 -0.1908 -2.4560 48 1 1.3429 1.9144 -1.7147 49 1 2.8798 1.4954 -2.5087 50 1 1.5189 2.8949 -3.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597255318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:31 Heat of formation + Delta-G solvation = -113.638043 kcal Electronic energy + Delta-G solvation = -28808.092435 eV Core-core repulsion = 24835.740080 eV Total energy + Delta-G solvation = -3972.352355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51240 -39.51586 -38.02472 -37.14167 -35.92412 -34.07610 -33.58727 -33.27611 -31.22891 -29.74527 -27.42109 -27.03557 -25.78500 -24.07519 -23.70556 -22.39980 -21.53023 -21.06353 -20.33385 -19.02360 -17.89569 -17.51030 -17.00255 -16.76062 -16.22363 -15.99683 -15.68223 -15.31823 -15.19264 -14.82068 -14.55326 -14.27079 -13.93964 -13.76770 -13.73378 -13.57788 -13.33123 -12.99409 -12.93396 -12.48594 -12.18417 -12.04353 -11.98512 -11.78663 -11.64721 -11.38178 -11.20000 -10.99489 -10.95599 -10.83918 -10.80816 -10.20914 -10.19274 -10.15246 -10.06671 -9.92956 -9.14427 -8.89859 -8.85423 -8.58687 -8.35251 -6.38580 -4.08497 1.34172 2.19118 3.12521 3.35181 3.43837 3.45451 3.64244 3.89494 4.25349 4.35532 4.41251 4.44860 4.53485 4.71020 4.80508 4.91567 4.97062 5.03283 5.14635 5.18738 5.23873 5.27460 5.34716 5.38428 5.44766 5.50711 5.55521 5.59671 5.63583 5.71665 5.79220 5.82202 5.93016 5.95998 6.01677 6.08498 6.30786 6.38752 6.43346 6.63190 6.77689 6.91212 7.23113 7.31431 7.34899 7.43725 7.70327 7.97779 8.16221 8.43000 8.85320 9.63789 11.02188 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002303 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.579776 B =12154.272253 C =13223.188202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 H 0.082 0.918 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.044 3.956 7 N -0.574 5.574 8 C 0.507 3.493 9 O -0.511 6.511 10 C 0.502 3.498 11 O -0.516 6.516 12 N -0.687 5.687 13 C 0.112 3.888 14 C -0.116 4.116 15 C 0.012 3.988 16 C -0.604 4.604 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.912 5.912 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.151 3.849 25 H 0.077 0.923 26 C -0.118 4.118 27 C 0.070 3.930 28 O -0.569 6.569 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.064 0.936 38 H 0.413 0.587 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.269 0.731 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.040 0.960 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.154 25.384 11.273 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.174 4.174 6 C -0.077 4.077 7 N -0.307 5.307 8 C 0.290 3.710 9 O -0.387 6.387 10 C 0.283 3.717 11 O -0.396 6.396 12 N -0.337 5.337 13 C -0.010 4.010 14 C -0.154 4.154 15 C -0.026 4.026 16 C -0.642 4.642 17 H 0.068 0.932 18 C -0.189 4.189 19 N -0.548 5.548 20 Si 0.897 3.103 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.214 1.214 24 C 0.048 3.952 25 H 0.095 0.905 26 C -0.156 4.156 27 C -0.008 4.008 28 O -0.374 6.374 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.180 0.820 37 H 0.083 0.917 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 12.163 23.362 10.625 28.401 hybrid contribution 1.157 2.269 0.653 2.629 sum 13.320 25.631 11.278 31.009 Atomic orbital electron populations 1.21934 0.94539 1.02509 1.01852 1.21588 0.97029 0.99308 0.94498 0.90013 1.21598 1.00468 0.96111 0.97300 1.21876 1.01744 0.95526 0.98213 1.23343 1.01539 1.00562 0.82211 1.47928 1.53916 1.10688 1.18171 1.20183 0.79358 0.87654 0.83840 1.90831 1.55279 1.63249 1.29387 1.20248 0.80050 0.87902 0.83461 1.90246 1.56474 1.62505 1.30342 1.46077 1.48228 1.15125 1.24290 1.21865 0.99122 0.79016 1.00986 1.21790 0.97771 1.00786 0.95053 1.19152 0.96097 0.89663 0.97667 1.22015 1.34048 1.00193 1.07986 0.93212 1.25870 0.97958 0.92904 1.02185 1.70788 1.36891 1.36410 1.10688 0.83538 0.75878 0.76229 0.74617 1.20749 1.21418 1.21416 1.21324 0.98763 0.79786 0.95309 0.90547 1.22154 1.03115 0.92298 0.97992 1.22366 0.97045 0.95396 0.86033 1.86534 1.82041 1.28645 1.40188 0.92190 0.92565 0.92111 0.91809 0.91618 0.90583 0.91215 0.81978 0.91749 0.75110 0.91053 0.91040 0.92209 0.92241 0.97119 0.97110 0.92061 0.88083 0.89722 0.93856 0.94136 0.77757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.20 37.16 0.30 -0.93 16 2 C -0.11 -0.75 2.26 -90.50 -0.20 -0.95 16 3 H 0.08 0.47 6.87 -51.93 -0.36 0.11 16 4 C -0.12 -0.77 5.43 -26.69 -0.14 -0.91 16 5 C -0.14 -1.07 5.72 -26.83 -0.15 -1.22 16 6 C 0.04 0.43 6.23 -3.93 -0.02 0.40 16 7 N -0.57 -6.18 2.42 -165.98 -0.40 -6.58 16 8 C 0.51 6.67 7.63 -11.58 -0.09 6.58 16 9 O -0.51 -7.44 11.98 5.50 0.07 -7.37 16 10 C 0.50 7.22 7.81 -11.58 -0.09 7.13 16 11 O -0.52 -8.00 13.01 5.50 0.07 -7.93 16 12 N -0.69 -10.02 5.55 -60.72 -0.34 -10.36 16 13 C 0.11 1.87 5.68 -4.04 -0.02 1.84 16 14 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 15 C 0.01 0.29 4.28 -27.89 -0.12 0.17 16 16 C -0.60 -17.03 9.11 -34.44 -0.31 -17.34 16 17 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 18 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 19 N -0.91 -27.87 13.65 55.43 0.76 -27.11 16 20 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.15 1.35 2.74 -67.60 -0.19 1.17 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 C -0.12 -1.25 3.01 -26.73 -0.08 -1.33 16 27 C 0.07 0.57 6.49 37.16 0.24 0.81 16 28 O -0.57 -5.50 13.66 -35.23 -0.48 -5.98 16 29 H 0.06 0.59 5.97 -51.93 -0.31 0.28 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 6.19 -51.93 -0.32 0.22 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 36 H 0.16 1.95 3.74 -57.11 -0.21 1.74 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.41 5.61 7.96 -40.82 -0.32 5.28 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 44 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 45 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 46 H 0.10 1.34 6.29 -51.93 -0.33 1.01 16 47 H 0.08 1.06 5.45 -51.93 -0.28 0.77 16 48 H 0.04 0.29 6.68 -51.93 -0.35 -0.06 16 49 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.38 1.74 9.12 45.56 0.42 2.15 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -32.81 381.95 -8.15 -40.95 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.38 Total: 5.12 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.12 Total: -6.63 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.02 Total: -44.05 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.34 Total: -21.28 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.81 -8.15 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597255318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.685 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds