Wall clock time and date at job start Fri Apr 10 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.49364 * 2 1 4 4 C 1.53034 * 109.52548 * 120.08263 * 2 1 3 5 5 C 1.53045 * 109.53740 * 58.60485 * 4 2 1 6 6 C 1.52762 * 109.37991 * 61.24259 * 5 4 2 7 7 N 1.46926 * 109.00550 * 305.58440 * 6 5 4 8 8 C 1.34777 * 120.63193 * 233.58355 * 7 6 5 9 9 O 1.21351 * 120.00368 * 182.92449 * 8 7 6 10 10 C 1.49455 * 119.99687 * 2.93174 * 8 7 6 11 11 O 1.21351 * 120.00261 * 353.65985 * 10 8 7 12 12 N 1.34780 * 119.99791 * 173.66069 * 10 8 7 13 13 C 1.46506 * 119.99724 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46918 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47094 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47202 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00154 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00142 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99883 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47012 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46866 * 299.99198 * 20 18 16 23 23 H 1.48497 * 109.47261 * 59.99560 * 20 18 16 24 24 C 1.46928 * 118.74006 * 53.31459 * 7 6 5 25 25 H 1.09006 * 109.58139 * 66.57092 * 24 7 6 26 26 C 1.52996 * 109.58801 * 186.85311 * 24 7 6 27 27 C 1.52999 * 109.47307 * 178.38694 * 26 24 7 28 28 O 1.42895 * 109.47309 * 174.95532 * 27 26 24 29 29 H 1.09007 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47345 * 300.05757 * 1 2 3 31 31 H 1.08999 * 109.47374 * 60.06493 * 1 2 3 32 32 H 1.09002 * 109.46000 * 178.62423 * 4 2 1 33 33 H 1.08998 * 109.45904 * 298.59826 * 4 2 1 34 34 H 1.08997 * 109.49467 * 181.31416 * 5 4 2 35 35 H 1.08996 * 109.49348 * 301.37908 * 5 4 2 36 36 H 1.09002 * 109.50400 * 185.70918 * 6 5 4 37 37 H 1.08996 * 109.43351 * 65.42647 * 6 5 4 38 38 H 0.96999 * 120.00126 * 359.97438 * 12 10 8 39 39 H 1.08994 * 109.47313 * 60.00052 * 13 12 10 40 40 H 1.08994 * 109.46972 * 299.99720 * 13 12 10 41 41 H 1.09002 * 109.46892 * 60.00100 * 14 13 12 42 42 H 1.09000 * 109.46927 * 300.00079 * 14 13 12 43 43 H 1.09002 * 109.47034 * 60.00352 * 15 14 13 44 44 H 1.09002 * 109.47216 * 300.00428 * 15 14 13 45 45 H 0.97002 * 120.00096 * 0.02562 * 19 18 16 46 46 H 1.09005 * 109.46875 * 298.38805 * 26 24 7 47 47 H 1.08994 * 109.47546 * 58.38407 * 26 24 7 48 48 H 1.08997 * 109.46918 * 294.96354 * 27 26 24 49 49 H 1.09003 * 109.46747 * 54.95625 * 27 26 24 50 50 H 0.96703 * 114.00248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5044 -2.1560 1.2656 6 6 2.0106 -2.9022 0.0326 7 7 1.6523 -2.1378 -1.1699 8 6 0.9748 -2.7217 -2.1782 9 8 0.7311 -2.0950 -3.1884 10 6 0.5236 -4.1409 -2.0521 11 8 0.8647 -4.8032 -1.0941 12 7 -0.2621 -4.6852 -3.0023 13 6 -0.7039 -6.0766 -2.8789 14 6 -1.5771 -6.4429 -4.0807 15 6 -2.0380 -7.8960 -3.9522 16 6 -2.8975 -8.2570 -5.1362 17 1 -3.0950 -7.5234 -5.9039 18 6 -3.4319 -9.5239 -5.2395 19 7 -3.1911 -10.4174 -4.3050 20 14 -4.4968 -9.9715 -6.7076 21 1 -4.9442 -11.3820 -6.5828 22 1 -5.6819 -9.0777 -6.7502 23 1 -3.7103 -9.8108 -7.9569 24 6 2.0413 -0.7233 -1.2498 25 1 3.1274 -0.6454 -1.3011 26 6 1.4222 -0.0908 -2.4978 27 6 1.7958 1.3917 -2.5571 28 8 1.3176 1.9550 -3.7802 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 3.1312 -0.7437 1.2347 33 1 1.6992 -0.1961 2.1388 34 1 1.8500 -2.6629 2.1665 35 1 0.4147 -2.1361 1.2546 36 1 1.5492 -3.8888 -0.0106 37 1 3.0941 -3.0055 0.0907 38 1 -0.5351 -4.1557 -3.7678 39 1 -1.2801 -6.1948 -1.9612 40 1 0.1659 -6.7327 -2.8489 41 1 -1.0005 -6.3247 -4.9982 42 1 -2.4470 -5.7867 -4.1112 43 1 -2.6145 -8.0146 -3.0347 44 1 -1.1679 -8.5519 -3.9219 45 1 -2.6378 -10.1850 -3.5429 46 1 1.7997 -0.5964 -3.3867 47 1 0.3377 -0.1908 -2.4560 48 1 1.3429 1.9144 -1.7147 49 1 2.8798 1.4954 -2.5087 50 1 1.5189 2.8949 -3.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597255318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:30 Heat of formation + Delta-G solvation = -137.610173 kcal Electronic energy + Delta-G solvation = -28809.131945 eV Core-core repulsion = 24835.740080 eV Total energy + Delta-G solvation = -3973.391865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46297 -40.54894 -38.97343 -37.85458 -37.34440 -35.66904 -34.66115 -34.06997 -32.98735 -30.47401 -28.79063 -27.92281 -26.90607 -25.32745 -24.69899 -23.78640 -22.64017 -22.24543 -21.46827 -19.82619 -18.96670 -18.74721 -18.39445 -17.80876 -17.27464 -17.02393 -16.55959 -16.33426 -16.27918 -15.71029 -15.64441 -15.57204 -15.16519 -14.99532 -14.84353 -14.71242 -14.30458 -14.22160 -13.70479 -13.65580 -13.62753 -13.26767 -12.90316 -12.76807 -12.64978 -12.60820 -12.46772 -12.11633 -12.01364 -11.90066 -11.84795 -11.83493 -11.62448 -11.45521 -11.03028 -10.83581 -10.72704 -10.54541 -10.41204 -9.84279 -9.73209 -8.68982 -6.39966 0.24353 1.17393 1.53684 1.61823 1.81056 2.02867 2.34073 2.57498 3.10664 3.15826 3.34785 3.67103 3.80363 3.85497 3.93917 4.04416 4.05030 4.14295 4.25862 4.32863 4.36636 4.39324 4.48251 4.53052 4.58912 4.63782 4.69079 4.71400 4.73820 4.89636 4.92770 4.95194 4.99699 5.08858 5.13287 5.16770 5.24870 5.29200 5.34012 5.40208 5.45222 5.45764 5.62288 5.91238 5.98257 6.14409 6.18964 6.57055 6.65951 6.85349 6.94965 7.41798 8.72270 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002303 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.579776 B =12154.272253 C =13223.188202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.042 3.958 7 N -0.566 5.566 8 C 0.506 3.494 9 O -0.531 6.531 10 C 0.501 3.499 11 O -0.529 6.529 12 N -0.685 5.685 13 C 0.128 3.872 14 C -0.100 4.100 15 C 0.010 3.990 16 C -0.620 4.620 17 H 0.054 0.946 18 C -0.040 4.040 19 N -0.938 5.938 20 Si 1.118 2.882 21 H -0.284 1.284 22 H -0.268 1.268 23 H -0.269 1.269 24 C 0.149 3.851 25 H 0.095 0.905 26 C -0.113 4.113 27 C 0.072 3.928 28 O -0.598 6.598 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.418 0.582 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H -0.006 1.006 44 H -0.006 1.006 45 H 0.256 0.744 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.144 27.842 11.820 33.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.126 0.874 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.079 4.079 7 N -0.298 5.298 8 C 0.288 3.712 9 O -0.409 6.409 10 C 0.283 3.717 11 O -0.408 6.408 12 N -0.337 5.337 13 C 0.005 3.995 14 C -0.138 4.138 15 C -0.028 4.028 16 C -0.658 4.658 17 H 0.072 0.928 18 C -0.238 4.238 19 N -0.576 5.576 20 Si 0.939 3.061 21 H -0.210 1.210 22 H -0.194 1.194 23 H -0.194 1.194 24 C 0.047 3.953 25 H 0.113 0.887 26 C -0.150 4.150 27 C -0.005 4.005 28 O -0.407 6.407 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.098 0.902 38 H 0.255 0.745 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.013 0.987 44 H 0.012 0.988 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.187 25.878 11.203 31.130 hybrid contribution 0.889 1.547 0.538 1.863 sum 14.076 27.425 11.742 32.986 Atomic orbital electron populations 1.21907 0.95569 1.01134 1.02026 1.21612 0.96043 1.00477 0.93681 0.87438 1.21593 1.01259 0.94755 0.97373 1.21854 1.00945 0.96711 0.97558 1.23303 1.02212 0.99737 0.82601 1.48042 1.52500 1.11638 1.17619 1.19947 0.80010 0.86905 0.84359 1.90849 1.56439 1.63328 1.30247 1.20594 0.79559 0.88618 0.82949 1.90292 1.56753 1.63156 1.30647 1.45915 1.48632 1.14254 1.24849 1.21474 0.98361 0.80230 0.99433 1.21520 0.98487 0.97326 0.96494 1.19091 0.94869 0.92835 0.95957 1.22488 1.34058 1.00411 1.08856 0.92793 1.27445 0.98919 0.93261 1.04130 1.70919 1.38123 1.37227 1.11317 0.82930 0.75117 0.76116 0.71985 1.20998 1.19354 1.19386 1.21544 0.99682 0.78445 0.95659 0.88695 1.21964 1.01451 0.94190 0.97442 1.22370 0.98331 0.93611 0.86228 1.86479 1.82540 1.30654 1.41020 0.94379 0.91154 0.93132 0.90366 0.90105 0.89231 0.92573 0.84217 0.90245 0.74482 0.91429 0.91500 0.91678 0.91645 0.98734 0.98770 0.93431 0.91235 0.92229 0.91874 0.92108 0.75382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.20 71.98 0.59 -1.63 16 2 C -0.10 -1.13 2.26 -10.72 -0.02 -1.15 16 3 H 0.11 0.75 6.87 -2.38 -0.02 0.74 16 4 C -0.11 -1.08 5.43 30.62 0.17 -0.91 16 5 C -0.13 -1.83 5.72 30.53 0.17 -1.66 16 6 C 0.04 0.76 6.23 86.22 0.54 1.30 16 7 N -0.57 -11.77 2.42 -797.41 -1.93 -13.70 16 8 C 0.51 13.49 7.63 87.27 0.67 14.16 16 9 O -0.53 -15.89 11.98 -3.25 -0.04 -15.93 16 10 C 0.50 14.67 7.81 87.27 0.68 15.35 16 11 O -0.53 -16.66 13.01 -3.25 -0.04 -16.70 16 12 N -0.69 -20.28 5.55 -464.39 -2.58 -22.86 16 13 C 0.13 4.33 5.68 86.38 0.49 4.82 16 14 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 15 C 0.01 0.52 4.28 29.85 0.13 0.65 16 16 C -0.62 -35.25 9.11 25.60 0.23 -35.01 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 18 C -0.04 -2.34 5.46 84.66 0.46 -1.87 16 19 N -0.94 -58.55 13.65 21.45 0.29 -58.25 16 20 Si 1.12 50.30 29.90 68.60 2.05 52.35 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.15 2.38 2.74 44.97 0.12 2.51 16 25 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 26 C -0.11 -2.31 3.01 30.59 0.09 -2.22 16 27 C 0.07 1.04 6.49 71.98 0.47 1.50 16 28 O -0.60 -10.82 13.66 -148.98 -2.03 -12.85 16 29 H 0.04 0.73 5.97 -2.38 -0.01 0.72 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.85 6.19 -2.39 -0.01 0.84 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.94 6.34 -2.39 -0.02 0.93 16 36 H 0.14 3.35 3.74 -84.47 -0.32 3.04 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.42 11.49 7.96 -92.71 -0.74 10.75 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H -0.01 -0.30 8.01 -2.39 -0.02 -0.32 16 44 H -0.01 -0.32 8.01 -2.39 -0.02 -0.34 16 45 H 0.26 16.12 7.22 -92.71 -0.67 15.45 16 46 H 0.07 1.87 6.29 -2.38 -0.01 1.86 16 47 H 0.06 1.51 5.45 -2.39 -0.01 1.50 16 48 H 0.06 0.65 6.68 -2.39 -0.02 0.64 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.40 2.98 9.12 -74.05 -0.68 2.30 16 Total: -1.00 -72.43 381.95 0.02 -72.41 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.66 Total: 23.46 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.95 Total: -7.93 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.21 Total: -94.81 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -2.12 Total: -45.48 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Total: -72.43 0.02 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597255318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.198 kcal (2) G-P(sol) polarization free energy of solvation -72.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds