Wall clock time and date at job start Fri Apr 10 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47167 * 2 1 4 4 N 1.46294 * 113.99967 * 180.02562 * 3 2 1 5 5 C 1.46850 * 110.99955 * 120.00390 * 4 3 2 6 6 C 1.53033 * 109.52229 * 185.83678 * 5 4 3 7 7 C 1.53112 * 109.28281 * 300.81943 * 6 5 4 8 8 C 1.53006 * 109.52707 * 177.55714 * 7 6 5 9 9 C 1.50698 * 109.47302 * 175.12708 * 8 7 6 10 10 O 1.21287 * 120.00158 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99818 * 180.02562 * 9 8 7 12 12 C 1.47016 * 125.65194 * 0.02562 * 11 9 8 13 13 C 1.54317 * 107.27544 * 178.89694 * 12 11 9 14 14 C 1.55161 * 102.94040 * 337.81168 * 13 12 11 15 15 O 1.42903 * 111.00309 * 277.38547 * 14 13 12 16 16 C 1.50696 * 111.00179 * 153.57607 * 14 13 12 17 17 H 1.08003 * 119.99607 * 243.51886 * 16 14 13 18 18 C 1.37879 * 120.00584 * 63.24935 * 16 14 13 19 19 N 1.31521 * 119.99465 * 354.29255 * 18 16 14 20 20 Si 1.86794 * 120.00270 * 174.29525 * 18 16 14 21 21 H 1.48502 * 109.46911 * 94.98366 * 20 18 16 22 22 H 1.48502 * 109.47227 * 214.97830 * 20 18 16 23 23 H 1.48496 * 109.47481 * 334.98199 * 20 18 16 24 24 C 1.47426 * 125.64565 * 179.97438 * 11 9 8 25 25 C 1.53121 * 109.21061 * 57.62378 * 7 6 5 26 26 C 1.46852 * 111.00286 * 244.21040 * 4 3 2 27 27 H 1.09003 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47063 * 299.99718 * 1 2 3 29 29 H 1.09000 * 109.47334 * 59.99515 * 1 2 3 30 30 H 1.09008 * 109.47091 * 240.00581 * 2 1 3 31 31 H 1.09000 * 109.47334 * 120.00484 * 2 1 3 32 32 H 1.09003 * 109.46032 * 65.82159 * 5 4 3 33 33 H 1.08993 * 109.46261 * 305.85741 * 5 4 3 34 34 H 1.09000 * 109.50317 * 180.87855 * 6 5 4 35 35 H 1.08998 * 109.53745 * 60.78205 * 6 5 4 36 36 H 1.08996 * 109.52766 * 297.69079 * 7 6 5 37 37 H 1.09000 * 109.46283 * 55.12675 * 8 7 6 38 38 H 1.08992 * 109.47209 * 295.12970 * 8 7 6 39 39 H 1.09007 * 109.87765 * 59.47967 * 12 11 9 40 40 H 1.09005 * 109.88215 * 298.31861 * 12 11 9 41 41 H 1.09001 * 110.72598 * 219.44849 * 13 12 11 42 42 H 1.08996 * 110.71948 * 96.17114 * 13 12 11 43 43 H 0.96701 * 114.00052 * 295.42104 * 15 14 13 44 44 H 0.97000 * 119.99793 * 180.02562 * 19 18 16 45 45 H 1.08997 * 110.37052 * 85.33270 * 24 11 9 46 46 H 1.09004 * 110.36714 * 323.00737 * 24 11 9 47 47 H 1.09003 * 109.50419 * 62.32353 * 25 7 6 48 48 H 1.09005 * 109.50392 * 182.43919 * 25 7 6 49 49 H 1.08995 * 109.46425 * 294.18146 * 26 4 3 50 50 H 1.09005 * 109.45796 * 54.15569 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4647 1.4628 -0.0006 5 6 3.9347 2.1879 -1.1879 6 6 5.4642 2.1632 -1.2301 7 6 6.0157 2.8154 0.0407 8 6 7.5438 2.7392 0.0329 9 6 8.0901 3.4854 1.2227 10 8 7.3319 4.0247 2.0007 11 7 9.4213 3.5535 1.4223 12 6 10.4488 2.9491 0.5619 13 6 11.8223 3.3105 1.1652 14 6 11.5085 4.5718 2.0127 15 8 11.4981 5.7463 1.1987 16 6 12.4865 4.7152 3.1502 17 1 12.1390 4.6597 4.1713 18 6 13.8257 4.9117 2.8875 19 7 14.2671 4.8621 1.6496 20 14 15.0130 5.2483 4.2897 21 1 15.6470 3.9755 4.7178 22 1 16.0623 6.1949 3.8334 23 1 14.2738 5.8420 5.4326 24 6 10.0882 4.2474 2.5390 25 6 5.4727 2.0726 1.2646 26 6 3.9428 2.0987 1.2337 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.5892 3.2208 -1.1430 33 1 3.5388 1.7115 -2.0847 34 1 5.8132 2.7148 -2.1030 35 1 5.8106 1.1314 -1.2893 36 1 5.7032 3.8589 0.0797 37 1 7.9252 3.1884 -0.8842 38 1 7.8559 1.6962 0.0836 39 1 10.3700 3.3515 -0.4482 40 1 10.3258 1.8662 0.5423 41 1 12.5400 3.5433 0.3785 42 1 12.1903 2.5027 1.7977 43 1 12.3557 5.9609 0.8069 44 1 15.2093 4.9999 1.4648 45 1 10.1464 3.5952 3.4104 46 1 9.5564 5.1661 2.7866 47 1 5.8186 1.0391 1.2462 48 1 5.8276 2.5597 2.1729 49 1 3.5974 3.1320 1.2673 50 1 3.5530 1.5573 2.0957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597803322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:37 Heat of formation + Delta-G solvation = -97.843070 kcal Electronic energy + Delta-G solvation = -28571.201285 eV Core-core repulsion = 24599.533851 eV Total energy + Delta-G solvation = -3971.667434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88599 -38.68260 -37.33222 -36.37754 -34.31691 -33.11936 -32.25704 -31.01311 -30.76882 -29.83904 -28.49820 -27.32118 -25.00721 -23.28276 -23.01796 -22.55229 -21.79969 -19.89059 -19.66643 -18.63792 -17.52449 -17.23794 -16.58189 -15.86408 -15.55959 -15.25064 -15.11290 -14.97957 -14.69919 -14.33283 -14.15491 -13.93075 -13.80260 -13.47542 -13.18672 -12.94397 -12.57542 -12.46056 -12.34907 -12.19575 -11.97188 -11.80629 -11.74327 -11.56771 -11.40753 -11.33665 -11.22853 -10.93296 -10.79511 -10.64706 -10.64149 -10.50404 -10.44841 -10.06463 -9.98832 -9.42379 -9.23119 -8.87058 -8.75513 -8.24215 -7.98921 -6.31960 -4.39842 2.33481 3.08191 3.16928 3.25524 3.30292 3.55407 4.24168 4.44382 4.63345 4.67589 4.82169 4.84526 4.93404 5.00371 5.01256 5.09208 5.17877 5.30672 5.32037 5.39872 5.42667 5.50582 5.53750 5.61426 5.66465 5.69280 5.74187 5.78042 5.80208 5.82462 5.85774 5.87712 6.00203 6.03476 6.23638 6.29591 6.35659 6.41824 6.63599 6.66566 6.88090 6.89964 6.96319 7.27306 7.33654 7.70017 7.97632 8.14938 8.61595 8.66360 9.27221 9.33159 10.74694 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.038870 B = 0.002106 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.183369 B =13292.841374 C =13578.195935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.268 6.268 4 N -0.363 5.363 5 C 0.045 3.955 6 C -0.109 4.109 7 C -0.076 4.076 8 C -0.130 4.130 9 C 0.522 3.478 10 O -0.555 6.555 11 N -0.607 5.607 12 C 0.098 3.902 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.582 6.582 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.120 3.880 25 C -0.112 4.112 26 C 0.045 3.955 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.380 0.620 44 H 0.268 0.732 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.045 0.955 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 -10.004 -7.362 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.273 6.273 4 N -0.132 5.132 5 C -0.083 4.083 6 C -0.147 4.147 7 C -0.095 4.095 8 C -0.170 4.170 9 C 0.311 3.689 10 O -0.435 6.435 11 N -0.340 5.340 12 C -0.025 4.025 13 C -0.174 4.174 14 C 0.206 3.794 15 O -0.390 6.390 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.002 4.002 25 C -0.150 4.150 26 C -0.083 4.083 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.117 0.883 49 H 0.063 0.937 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.858 -10.012 -6.917 21.610 hybrid contribution 1.238 0.716 0.450 1.499 sum -16.620 -9.295 -6.466 20.111 Atomic orbital electron populations 1.21774 0.93855 1.02333 1.02852 1.22259 0.93689 0.84465 1.00528 1.90673 1.13245 1.26446 1.96926 1.67518 0.91341 1.50755 1.03536 1.22347 0.95596 0.97390 0.92984 1.21684 0.92799 1.02091 0.98093 1.21009 0.93187 1.00748 0.94558 1.21662 0.96053 1.01580 0.97704 1.20191 0.80897 0.80942 0.86915 1.90618 1.56701 1.48155 1.47986 1.48662 1.04796 1.52803 1.27705 1.22200 0.90066 0.96094 0.94115 1.23178 0.92684 1.00609 1.00888 1.19609 0.89247 0.82178 0.88338 1.86145 1.37707 1.46647 1.68549 1.21448 0.92017 1.50922 0.93080 0.91710 1.24991 0.98188 0.93678 0.96149 1.69766 1.15829 1.49143 1.18538 0.86421 0.80311 0.78260 0.82121 1.20573 1.20943 1.19625 1.22344 0.93572 0.96037 0.88205 1.21815 0.92080 1.00949 1.00149 1.22407 0.96040 0.98192 0.91633 0.90860 0.92040 0.92090 0.93256 0.93239 0.93741 0.90153 0.90423 0.90677 0.90276 0.89051 0.89133 0.92449 0.92885 0.89469 0.91393 0.77097 0.92259 0.91139 0.91216 0.91499 0.88273 0.93688 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.07 0.63 7.16 37.16 0.27 0.89 16 3 O -0.27 -3.26 10.60 -13.92 -0.15 -3.41 16 4 N -0.36 -4.25 5.00 -113.81 -0.57 -4.82 16 5 C 0.05 0.47 5.99 -3.83 -0.02 0.44 16 6 C -0.11 -1.03 5.38 -26.66 -0.14 -1.17 16 7 C -0.08 -0.90 1.90 -90.50 -0.17 -1.08 16 8 C -0.13 -1.65 4.37 -27.88 -0.12 -1.77 16 9 C 0.52 9.22 7.58 -10.99 -0.08 9.13 16 10 O -0.55 -11.34 14.23 5.55 0.08 -11.26 16 11 N -0.61 -11.57 3.33 -170.53 -0.57 -12.14 16 12 C 0.10 1.69 6.49 -3.07 -0.02 1.67 16 13 C -0.13 -2.81 5.37 -24.90 -0.13 -2.94 16 14 C 0.25 5.81 0.88 -89.63 -0.08 5.73 16 15 O -0.58 -14.48 13.17 -35.23 -0.46 -14.94 16 16 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16 17 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 18 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 19 N -0.89 -22.47 10.76 55.43 0.60 -21.87 16 20 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 24 C 0.12 2.63 6.08 -2.53 -0.02 2.62 16 25 C -0.11 -1.39 5.09 -26.65 -0.14 -1.52 16 26 C 0.05 0.54 5.99 -3.83 -0.02 0.52 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.91 7.52 -51.93 -0.39 1.52 16 42 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 43 H 0.38 9.39 7.57 45.56 0.34 9.74 16 44 H 0.27 6.46 8.31 -40.82 -0.34 6.13 16 45 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 46 H 0.07 1.64 8.04 -51.93 -0.42 1.22 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 1.47 6.02 -51.93 -0.31 1.15 16 49 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -28.36 393.57 -9.17 -37.53 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.33 Total: 10.49 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.68 Total: -0.39 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.54 Total: -38.83 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.53 Total: -29.61 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.36 -9.17 -37.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597803322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.310 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds