Wall clock time and date at job start Fri Apr 10 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47167 * 2 1 4 4 N 1.46294 * 113.99967 * 180.02562 * 3 2 1 5 5 C 1.46850 * 110.99955 * 120.00390 * 4 3 2 6 6 C 1.53033 * 109.52229 * 185.83678 * 5 4 3 7 7 C 1.53112 * 109.28281 * 300.81943 * 6 5 4 8 8 C 1.53006 * 109.52707 * 177.55714 * 7 6 5 9 9 C 1.50698 * 109.47302 * 175.12708 * 8 7 6 10 10 O 1.21287 * 120.00158 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99818 * 180.02562 * 9 8 7 12 12 C 1.47016 * 125.65194 * 0.02562 * 11 9 8 13 13 C 1.54317 * 107.27544 * 178.89694 * 12 11 9 14 14 C 1.55161 * 102.94040 * 337.81168 * 13 12 11 15 15 O 1.42903 * 111.00309 * 277.38547 * 14 13 12 16 16 C 1.50696 * 111.00179 * 153.57607 * 14 13 12 17 17 H 1.08003 * 119.99607 * 243.51886 * 16 14 13 18 18 C 1.37879 * 120.00584 * 63.24935 * 16 14 13 19 19 N 1.31521 * 119.99465 * 354.29255 * 18 16 14 20 20 Si 1.86794 * 120.00270 * 174.29525 * 18 16 14 21 21 H 1.48502 * 109.46911 * 94.98366 * 20 18 16 22 22 H 1.48502 * 109.47227 * 214.97830 * 20 18 16 23 23 H 1.48496 * 109.47481 * 334.98199 * 20 18 16 24 24 C 1.47426 * 125.64565 * 179.97438 * 11 9 8 25 25 C 1.53121 * 109.21061 * 57.62378 * 7 6 5 26 26 C 1.46852 * 111.00286 * 244.21040 * 4 3 2 27 27 H 1.09003 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47063 * 299.99718 * 1 2 3 29 29 H 1.09000 * 109.47334 * 59.99515 * 1 2 3 30 30 H 1.09008 * 109.47091 * 240.00581 * 2 1 3 31 31 H 1.09000 * 109.47334 * 120.00484 * 2 1 3 32 32 H 1.09003 * 109.46032 * 65.82159 * 5 4 3 33 33 H 1.08993 * 109.46261 * 305.85741 * 5 4 3 34 34 H 1.09000 * 109.50317 * 180.87855 * 6 5 4 35 35 H 1.08998 * 109.53745 * 60.78205 * 6 5 4 36 36 H 1.08996 * 109.52766 * 297.69079 * 7 6 5 37 37 H 1.09000 * 109.46283 * 55.12675 * 8 7 6 38 38 H 1.08992 * 109.47209 * 295.12970 * 8 7 6 39 39 H 1.09007 * 109.87765 * 59.47967 * 12 11 9 40 40 H 1.09005 * 109.88215 * 298.31861 * 12 11 9 41 41 H 1.09001 * 110.72598 * 219.44849 * 13 12 11 42 42 H 1.08996 * 110.71948 * 96.17114 * 13 12 11 43 43 H 0.96701 * 114.00052 * 295.42104 * 15 14 13 44 44 H 0.97000 * 119.99793 * 180.02562 * 19 18 16 45 45 H 1.08997 * 110.37052 * 85.33270 * 24 11 9 46 46 H 1.09004 * 110.36714 * 323.00737 * 24 11 9 47 47 H 1.09003 * 109.50419 * 62.32353 * 25 7 6 48 48 H 1.09005 * 109.50392 * 182.43919 * 25 7 6 49 49 H 1.08995 * 109.46425 * 294.18146 * 26 4 3 50 50 H 1.09005 * 109.45796 * 54.15569 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4647 1.4628 -0.0006 5 6 3.9347 2.1879 -1.1879 6 6 5.4642 2.1632 -1.2301 7 6 6.0157 2.8154 0.0407 8 6 7.5438 2.7392 0.0329 9 6 8.0901 3.4854 1.2227 10 8 7.3319 4.0247 2.0007 11 7 9.4213 3.5535 1.4223 12 6 10.4488 2.9491 0.5619 13 6 11.8223 3.3105 1.1652 14 6 11.5085 4.5718 2.0127 15 8 11.4981 5.7463 1.1987 16 6 12.4865 4.7152 3.1502 17 1 12.1390 4.6597 4.1713 18 6 13.8257 4.9117 2.8875 19 7 14.2671 4.8621 1.6496 20 14 15.0130 5.2483 4.2897 21 1 15.6470 3.9755 4.7178 22 1 16.0623 6.1949 3.8334 23 1 14.2738 5.8420 5.4326 24 6 10.0882 4.2474 2.5390 25 6 5.4727 2.0726 1.2646 26 6 3.9428 2.0987 1.2337 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.5892 3.2208 -1.1430 33 1 3.5388 1.7115 -2.0847 34 1 5.8132 2.7148 -2.1030 35 1 5.8106 1.1314 -1.2893 36 1 5.7032 3.8589 0.0797 37 1 7.9252 3.1884 -0.8842 38 1 7.8559 1.6962 0.0836 39 1 10.3700 3.3515 -0.4482 40 1 10.3258 1.8662 0.5423 41 1 12.5400 3.5433 0.3785 42 1 12.1903 2.5027 1.7977 43 1 12.3557 5.9609 0.8069 44 1 15.2093 4.9999 1.4648 45 1 10.1464 3.5952 3.4104 46 1 9.5564 5.1661 2.7866 47 1 5.8186 1.0391 1.2462 48 1 5.8276 2.5597 2.1729 49 1 3.5974 3.1320 1.2673 50 1 3.5530 1.5573 2.0957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597803322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:37 Heat of formation + Delta-G solvation = -116.344970 kcal Electronic energy + Delta-G solvation = -28572.003587 eV Core-core repulsion = 24599.533851 eV Total energy + Delta-G solvation = -3972.469736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22258 -39.83174 -38.79626 -37.31265 -36.04558 -34.21208 -34.04809 -31.90308 -31.79791 -31.18248 -30.06242 -28.55412 -26.71019 -24.25711 -24.07812 -23.48406 -22.94855 -21.53823 -20.70832 -20.05565 -19.10184 -18.37981 -17.99851 -16.97477 -16.83974 -16.63356 -16.60436 -16.13532 -15.97045 -15.52814 -15.36164 -15.14570 -14.87601 -14.56277 -14.50660 -14.14326 -13.95408 -13.73007 -13.42891 -13.27482 -13.20427 -13.16370 -12.96058 -12.82471 -12.65851 -12.62678 -12.46042 -12.38072 -12.27939 -12.20585 -11.83455 -11.73107 -11.58909 -11.36468 -11.22563 -10.82251 -10.73492 -10.57713 -10.12057 -9.77684 -9.50723 -8.23952 -6.38204 1.40514 1.45000 1.50046 1.53906 1.71550 2.13142 2.40507 3.00391 3.54627 3.59791 3.72746 3.81417 3.90500 4.05268 4.12136 4.17243 4.22949 4.30095 4.35772 4.40087 4.41560 4.42727 4.50520 4.59588 4.61947 4.64830 4.71029 4.72199 4.80001 4.84342 4.88537 4.95911 4.97144 5.04765 5.06292 5.18218 5.21129 5.26048 5.26265 5.34381 5.45479 5.47512 5.58992 5.76571 5.78898 6.07658 6.08775 6.63978 6.72602 7.24578 7.32231 7.37658 8.81070 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.038870 B = 0.002106 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.183369 B =13292.841374 C =13578.195935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 O -0.289 6.289 4 N -0.363 5.363 5 C 0.042 3.958 6 C -0.097 4.097 7 C -0.073 4.073 8 C -0.118 4.118 9 C 0.514 3.486 10 O -0.590 6.590 11 N -0.613 5.613 12 C 0.106 3.894 13 C -0.126 4.126 14 C 0.232 3.768 15 O -0.592 6.592 16 C -0.564 4.564 17 H 0.052 0.948 18 C 0.039 3.961 19 N -0.903 5.903 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.278 1.278 24 C 0.126 3.874 25 C -0.106 4.106 26 C 0.049 3.951 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.377 0.623 44 H 0.271 0.729 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.027 0.973 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -11.998 -9.156 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 O -0.294 6.294 4 N -0.132 5.132 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.093 4.093 8 C -0.157 4.157 9 C 0.306 3.694 10 O -0.472 6.472 11 N -0.346 5.346 12 C -0.016 4.016 13 C -0.164 4.164 14 C 0.192 3.808 15 O -0.400 6.400 16 C -0.602 4.602 17 H 0.070 0.930 18 C -0.163 4.163 19 N -0.541 5.541 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.203 1.203 24 C 0.003 3.997 25 C -0.144 4.144 26 C -0.079 4.079 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.045 0.955 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.053 -12.025 -8.734 23.384 hybrid contribution 1.252 1.366 1.050 2.130 sum -16.802 -10.659 -7.684 21.329 Atomic orbital electron populations 1.21783 0.92311 1.03691 1.02537 1.22460 0.94911 0.83278 1.00778 1.90663 1.13391 1.28343 1.97009 1.67551 0.91418 1.50628 1.03563 1.22461 0.96391 0.96770 0.92974 1.21641 0.91747 1.02949 0.97173 1.20975 0.92934 0.99645 0.95699 1.21710 0.95977 1.02379 0.95661 1.21200 0.79936 0.80488 0.87824 1.90614 1.57364 1.49611 1.49583 1.48762 1.05723 1.52908 1.27165 1.22231 0.87147 0.98284 0.93970 1.22944 0.94751 0.98781 0.99953 1.19774 0.89728 0.82845 0.88409 1.86133 1.37504 1.47683 1.68711 1.21669 0.93135 1.52124 0.93269 0.92961 1.25566 0.99218 0.93389 0.98158 1.69820 1.16189 1.48764 1.19372 0.85578 0.78451 0.78225 0.79539 1.19858 1.20470 1.20338 1.22060 0.92919 0.95268 0.89502 1.21692 0.92115 1.01306 0.99277 1.22315 0.96014 0.97227 0.92351 0.88653 0.92597 0.92136 0.92575 0.93337 0.94930 0.88673 0.88305 0.89131 0.92638 0.86827 0.86290 0.90618 0.89095 0.90616 0.92178 0.77434 0.91977 0.91339 0.93979 0.90230 0.91198 0.95456 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.06 1.07 7.16 71.98 0.52 1.58 16 3 O -0.29 -6.77 10.60 -50.14 -0.53 -7.30 16 4 N -0.36 -8.04 5.00 -514.00 -2.57 -10.60 16 5 C 0.04 0.79 5.99 86.32 0.52 1.30 16 6 C -0.10 -1.52 5.38 30.64 0.16 -1.35 16 7 C -0.07 -1.61 1.90 -10.71 -0.02 -1.63 16 8 C -0.12 -2.62 4.37 29.85 0.13 -2.48 16 9 C 0.51 17.63 7.58 87.66 0.66 18.29 16 10 O -0.59 -24.57 14.23 -3.05 -0.04 -24.62 16 11 N -0.61 -22.72 3.33 -811.81 -2.70 -25.42 16 12 C 0.11 3.36 6.49 86.73 0.56 3.92 16 13 C -0.13 -5.13 5.37 31.78 0.17 -4.96 16 14 C 0.23 11.09 0.88 -10.15 -0.01 11.08 16 15 O -0.59 -29.90 13.17 -148.98 -1.96 -31.86 16 16 C -0.56 -29.36 8.25 25.60 0.21 -29.15 16 17 H 0.05 2.77 7.79 -2.91 -0.02 2.74 16 18 C 0.04 1.94 5.26 84.65 0.45 2.38 16 19 N -0.90 -45.19 10.76 21.45 0.23 -44.96 16 20 Si 0.96 40.81 29.54 68.60 2.03 42.83 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.13 5.63 6.08 86.85 0.53 6.16 16 25 C -0.11 -2.54 5.09 30.65 0.16 -2.38 16 26 C 0.05 1.18 5.99 86.32 0.52 1.70 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.49 7.96 -2.39 -0.02 1.47 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.08 3.25 7.52 -2.39 -0.02 3.23 16 42 H 0.06 2.51 8.03 -2.39 -0.02 2.49 16 43 H 0.38 18.93 7.57 -74.06 -0.56 18.37 16 44 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 45 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 46 H 0.04 2.07 8.04 -2.39 -0.02 2.05 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.07 2.11 6.02 -2.38 -0.01 2.10 16 49 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -62.86 393.57 0.09 -62.76 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.35 Total: 35.76 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.29 Total: 3.40 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -5.04 Total: -80.98 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -2.54 Total: -63.78 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -62.86 0.09 -62.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597803322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.582 kcal (2) G-P(sol) polarization free energy of solvation -62.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds