Wall clock time and date at job start Fri Apr 10 2020 18:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.45824 * 2 1 4 4 C 1.53040 * 109.45961 * 119.96354 * 2 1 3 5 5 C 1.53185 * 109.31217 * 181.38500 * 4 2 1 6 6 N 1.46925 * 108.77759 * 305.36458 * 5 4 2 7 7 C 1.34775 * 120.62573 * 233.58934 * 6 5 4 8 8 O 1.21357 * 119.99680 * 171.35732 * 7 6 5 9 9 C 1.49450 * 120.00632 * 351.35236 * 7 6 5 10 10 O 1.21352 * 119.99685 * 353.23637 * 9 7 6 11 11 N 1.34770 * 120.00356 * 173.23004 * 9 7 6 12 12 C 1.46502 * 120.00155 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46996 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47469 * 300.00341 * 13 12 11 15 15 C 1.52996 * 109.46937 * 60.00635 * 13 12 11 16 16 C 1.50700 * 109.46927 * 180.02562 * 13 12 11 17 17 H 1.08009 * 120.00124 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00320 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99593 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 120.00324 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47177 * 90.00039 * 20 18 16 22 22 H 1.48502 * 109.47166 * 210.00063 * 20 18 16 23 23 H 1.48502 * 109.47316 * 330.00072 * 20 18 16 24 24 C 1.46917 * 118.73892 * 53.60701 * 6 5 4 25 25 C 1.53041 * 109.45820 * 240.02819 * 2 1 3 26 26 H 1.09000 * 109.50090 * 298.56692 * 25 2 1 27 27 C 1.53005 * 109.52604 * 58.64612 * 25 2 1 28 28 O 1.42900 * 109.47093 * 184.85159 * 27 25 2 29 29 H 1.09008 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47310 * 299.97009 * 1 2 3 31 31 H 1.08995 * 109.47160 * 59.97509 * 1 2 3 32 32 H 1.09002 * 109.49874 * 61.42956 * 4 2 1 33 33 H 1.09006 * 109.49192 * 301.33586 * 4 2 1 34 34 H 1.09001 * 109.58915 * 185.57067 * 5 4 2 35 35 H 1.09003 * 109.58870 * 65.15152 * 5 4 2 36 36 H 0.97006 * 119.99784 * 0.02562 * 11 9 7 37 37 H 1.08994 * 109.47416 * 300.00534 * 12 11 9 38 38 H 1.09003 * 109.46729 * 60.00812 * 12 11 9 39 39 H 1.08997 * 109.47027 * 60.00170 * 14 13 12 40 40 H 1.08998 * 109.46770 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.46717 * 300.00046 * 14 13 12 42 42 H 1.09006 * 109.47532 * 59.99596 * 15 13 12 43 43 H 1.09005 * 109.47309 * 179.97438 * 15 13 12 44 44 H 1.09004 * 109.47370 * 299.99949 * 15 13 12 45 45 H 0.96995 * 119.99894 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.59139 * 66.18015 * 24 6 5 47 47 H 1.09005 * 109.58687 * 186.46607 * 24 6 5 48 48 H 1.08997 * 109.46638 * 304.85422 * 27 25 2 49 49 H 1.09000 * 109.46328 * 64.85290 * 27 25 2 50 50 H 0.96701 * 113.99931 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2643 6 7 4.0678 -1.2488 0.0001 7 6 4.9620 -2.2572 0.0003 8 8 5.2463 -2.8162 -1.0387 9 6 5.6035 -2.6871 1.2798 10 8 5.4146 -2.0520 2.2965 11 7 6.3917 -3.7800 1.3047 12 6 7.0210 -4.2010 2.5589 13 6 7.8559 -5.4594 2.3133 14 6 6.9507 -6.5791 1.7959 15 6 8.9389 -5.1583 1.2754 16 6 8.5027 -5.8928 3.6036 17 1 8.3347 -5.3274 4.5085 18 6 9.3089 -7.0109 3.6291 19 7 9.5131 -7.6996 2.5274 20 14 10.1112 -7.5477 5.2283 21 1 9.2099 -8.4865 5.9435 22 1 11.3988 -8.2260 4.9328 23 1 10.3628 -6.3574 6.0798 24 6 3.5714 -0.6887 -1.2642 25 6 2.0398 -0.7209 -1.2500 26 1 1.6978 -1.7558 -1.2382 27 6 1.5027 -0.0199 -2.4995 28 8 1.8854 -0.7582 -3.6616 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 1.6978 -1.7556 1.2384 33 1 1.6572 -0.2205 2.1398 34 1 3.9417 -1.2843 2.0985 35 1 3.9143 0.3410 1.3673 36 1 6.5429 -4.2875 0.4919 37 1 7.6654 -3.4031 2.9278 38 1 6.2494 -4.4159 3.2982 39 1 6.4826 -6.2659 0.8627 40 1 7.5455 -7.4757 1.6214 41 1 6.1792 -6.7935 2.5354 42 1 9.5838 -4.3605 1.6440 43 1 9.5340 -6.0547 1.1007 44 1 8.4708 -4.8450 0.3422 45 1 10.0799 -8.4865 2.5454 46 1 3.9143 0.3408 -1.3674 47 1 3.9437 -1.2833 -2.0985 48 1 0.4155 0.0356 -2.4458 49 1 1.9156 0.9873 -2.5566 50 1 1.5784 -0.3706 -4.4926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598681978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:43 Heat of formation + Delta-G solvation = -142.315515 kcal Electronic energy + Delta-G solvation = -29049.025471 eV Core-core repulsion = 25075.429567 eV Total energy + Delta-G solvation = -3973.595903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09508 -40.32445 -39.18302 -38.29367 -37.37286 -35.47490 -34.74731 -32.76198 -32.58314 -29.61626 -28.10608 -27.60537 -27.37220 -26.89648 -25.10622 -23.38401 -23.10468 -21.48586 -20.79986 -20.51314 -18.83911 -18.31600 -18.08723 -17.76082 -17.22536 -16.75748 -16.60692 -16.34953 -15.78941 -15.60667 -15.29424 -15.15438 -14.88961 -14.76507 -14.68426 -14.37952 -14.25122 -14.06993 -13.72529 -13.36362 -13.22139 -13.12040 -12.77427 -12.72064 -12.70562 -12.58717 -12.43853 -12.29455 -12.12185 -12.05169 -11.89014 -11.52344 -11.46498 -11.37870 -11.23863 -10.84069 -10.73906 -10.42493 -10.29435 -10.06131 -9.81265 -8.01659 -6.18443 0.29694 1.28083 1.44681 1.47556 1.55724 2.06999 2.42382 2.53842 3.22329 3.25041 3.31409 3.69056 3.76525 3.95654 3.98497 4.22404 4.33194 4.39220 4.46673 4.48023 4.50215 4.57983 4.66284 4.66424 4.73148 4.81232 4.88112 4.92147 4.98443 5.01247 5.02337 5.06462 5.07754 5.13602 5.15694 5.26362 5.36816 5.39510 5.48901 5.53379 5.63140 5.67122 5.94413 6.09423 6.17606 6.25357 6.40301 6.67400 6.85407 6.93143 6.95591 7.49726 8.97800 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.026217 B = 0.002485 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.737609 B =11263.734073 C =11854.696587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.092 0.908 4 C -0.124 4.124 5 C 0.064 3.936 6 N -0.577 5.577 7 C 0.505 3.495 8 O -0.549 6.549 9 C 0.500 3.500 10 O -0.533 6.533 11 N -0.680 5.680 12 C 0.143 3.857 13 C 0.051 3.949 14 C -0.124 4.124 15 C -0.125 4.125 16 C -0.525 4.525 17 H 0.053 0.947 18 C 0.025 3.975 19 N -0.903 5.903 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.114 3.886 25 C -0.093 4.093 26 H 0.057 0.943 27 C 0.082 3.918 28 O -0.598 6.598 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 18.589 -8.199 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.056 4.056 6 N -0.309 5.309 7 C 0.288 3.712 8 O -0.427 6.427 9 C 0.281 3.719 10 O -0.413 6.413 11 N -0.331 5.331 12 C 0.021 3.979 13 C 0.050 3.950 14 C -0.182 4.182 15 C -0.183 4.183 16 C -0.564 4.564 17 H 0.072 0.928 18 C -0.174 4.174 19 N -0.541 5.541 20 Si 0.776 3.224 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.007 4.007 25 C -0.112 4.112 26 H 0.076 0.924 27 C 0.004 3.996 28 O -0.407 6.407 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -18.411 18.192 -7.637 26.986 hybrid contribution 0.598 -0.640 -0.012 0.876 sum -17.813 17.552 -7.649 26.151 Atomic orbital electron populations 1.21896 0.93491 1.01967 1.03073 1.21121 0.96893 0.99820 0.92159 0.88980 1.21999 0.93681 1.01121 0.99447 1.22957 0.95259 1.01459 0.85961 1.48085 1.40026 1.32972 1.09830 1.20163 0.81068 0.81224 0.88764 1.90740 1.63280 1.54643 1.34081 1.20245 0.80756 0.81860 0.89010 1.90462 1.61020 1.54300 1.35502 1.46132 1.46022 1.26589 1.14381 1.21580 0.95444 0.97361 0.83536 1.18371 0.91832 0.89796 0.94965 1.21712 0.97923 1.01594 0.96974 1.21720 0.99481 1.00683 0.96394 1.21244 1.29239 1.11146 0.94735 0.92849 1.25518 0.96697 0.96386 0.98834 1.69932 1.38498 1.18044 1.27640 0.85689 0.77831 0.78285 0.80582 1.20477 1.21170 1.19658 1.21846 0.94658 0.99377 0.84837 1.21518 0.93614 1.00552 0.95547 0.92434 1.22304 0.99306 0.94188 0.83789 1.86499 1.80953 1.55402 1.17866 0.93442 0.91226 0.91037 0.92919 0.88105 0.86014 0.89729 0.75095 0.92534 0.92355 0.95442 0.91787 0.95627 0.95682 0.91771 0.95409 0.93063 0.89230 0.90707 0.91027 0.91597 0.75253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.81 71.98 0.63 -0.73 16 2 C -0.08 -1.00 2.23 -10.77 -0.02 -1.03 16 3 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -1.99 5.36 30.67 0.16 -1.82 16 5 C 0.06 1.39 5.98 86.36 0.52 1.90 16 6 N -0.58 -15.08 2.97 -820.49 -2.44 -17.51 16 7 C 0.51 16.80 7.73 87.27 0.67 17.48 16 8 O -0.55 -20.87 15.93 -3.27 -0.05 -20.93 16 9 C 0.50 17.78 7.74 87.27 0.68 18.45 16 10 O -0.53 -19.43 13.18 -3.25 -0.04 -19.47 16 11 N -0.68 -25.59 4.95 -464.41 -2.30 -27.89 16 12 C 0.14 5.98 4.50 86.38 0.39 6.37 16 13 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 14 C -0.12 -5.75 8.08 71.98 0.58 -5.17 16 15 C -0.12 -5.81 8.08 71.98 0.58 -5.23 16 16 C -0.53 -27.40 8.01 25.60 0.21 -27.19 16 17 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 18 C 0.03 1.33 5.15 84.65 0.44 1.77 16 19 N -0.90 -48.87 9.35 21.45 0.20 -48.67 16 20 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.11 2.50 5.56 86.37 0.48 2.98 16 25 C -0.09 -1.57 2.12 -10.71 -0.02 -1.59 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 C 0.08 0.97 6.19 71.98 0.45 1.42 16 28 O -0.60 -9.52 13.31 -148.98 -1.98 -11.50 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.47 6.30 -2.39 -0.02 0.46 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.12 3.29 4.32 -47.25 -0.20 3.09 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.41 15.47 5.65 -92.70 -0.52 14.94 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.03 1.12 6.86 -2.39 -0.02 1.11 16 40 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.06 3.30 6.07 -2.38 -0.01 3.29 16 44 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 45 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 2.08 6.85 -2.38 -0.02 2.07 16 48 H 0.07 0.60 6.15 -2.39 -0.01 0.58 16 49 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.40 2.44 9.12 -74.06 -0.68 1.76 16 Total: -1.00 -63.78 382.74 0.69 -63.09 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.44 Total: 28.53 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.71 Total: 9.97 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -4.54 Total: -94.08 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -2.08 Total: -51.90 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -63.78 0.69 -63.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598681978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.226 kcal (2) G-P(sol) polarization free energy of solvation -63.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds