Wall clock time and date at job start Fri Apr 10 2020 18:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50214 * 2 1 4 4 C 1.53037 * 109.50465 * 120.07966 * 2 1 3 5 5 N 1.46852 * 109.52196 * 179.15763 * 4 2 1 6 6 C 1.46894 * 110.99840 * 174.16000 * 5 4 2 7 7 C 1.50697 * 109.47436 * 293.61408 * 6 5 4 8 8 O 1.21291 * 119.99911 * 353.73505 * 7 6 5 9 9 N 1.34778 * 119.99898 * 173.45699 * 7 6 5 10 10 C 1.37106 * 119.99830 * 180.27229 * 9 7 6 11 11 H 1.07995 * 120.00075 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99786 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99731 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46957 * 90.00334 * 14 12 10 16 16 H 1.48496 * 109.47089 * 210.00302 * 14 12 10 17 17 H 1.48500 * 109.47157 * 330.00131 * 14 12 10 18 18 C 1.46847 * 111.19943 * 298.26095 * 5 4 2 19 19 C 1.53032 * 109.52231 * 61.74221 * 18 5 4 20 20 C 1.53121 * 109.28051 * 300.81604 * 19 18 5 21 21 H 1.08991 * 109.57547 * 297.72274 * 20 19 18 22 22 C 1.50701 * 109.52409 * 177.56136 * 20 19 18 23 23 O 1.20827 * 119.99900 * 240.31933 * 22 20 19 24 24 O 1.34223 * 120.00055 * 60.31890 * 22 20 19 25 25 C 1.45202 * 116.99941 * 179.97438 * 24 22 20 26 26 C 1.53008 * 109.47005 * 60.00467 * 25 24 22 27 27 C 1.53002 * 109.47080 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.47548 * 300.00086 * 25 24 22 29 29 H 1.09002 * 109.46996 * 299.91213 * 1 2 3 30 30 H 1.08996 * 109.47362 * 59.92058 * 1 2 3 31 31 H 1.09004 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.45955 * 59.14810 * 4 2 1 33 33 H 1.08993 * 109.46697 * 299.17959 * 4 2 1 34 34 H 1.09006 * 109.47265 * 173.61143 * 6 5 4 35 35 H 1.09005 * 109.47135 * 53.61382 * 6 5 4 36 36 H 0.97001 * 120.00195 * 0.27492 * 9 7 6 37 37 H 0.97002 * 120.00025 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.45875 * 181.75384 * 18 5 4 39 39 H 1.08996 * 109.45995 * 301.72651 * 18 5 4 40 40 H 1.09001 * 109.50686 * 180.87705 * 19 18 5 41 41 H 1.09000 * 109.50810 * 60.75891 * 19 18 5 42 42 H 1.08999 * 109.47005 * 59.99735 * 26 25 24 43 43 H 1.08998 * 109.46682 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46971 * 299.99791 * 26 25 24 45 45 H 1.09000 * 109.46746 * 60.00237 * 27 25 24 46 46 H 1.08999 * 109.46785 * 180.02562 * 27 25 24 47 47 H 1.08999 * 109.47453 * 300.00586 * 27 25 24 48 48 H 1.09000 * 109.46844 * 59.99954 * 28 25 24 49 49 H 1.08991 * 109.47348 * 179.97438 * 28 25 24 50 50 H 1.09000 * 109.47134 * 300.00286 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2483 5 7 3.5093 -0.7409 1.2385 6 6 4.0372 -1.3042 2.4882 7 6 3.7047 -0.3836 3.6341 8 8 3.1901 0.6931 3.4174 9 7 3.9741 -0.7592 4.9002 10 6 3.6665 0.0760 5.9431 11 1 3.2079 1.0345 5.7501 12 6 3.9437 -0.3114 7.2484 13 7 4.5012 -1.4780 7.4832 14 14 3.5239 0.8261 8.6694 15 1 2.1449 0.5408 9.1411 16 1 4.4831 0.6043 9.7810 17 1 3.6098 2.2375 8.2156 18 6 4.0238 -1.4715 0.0732 19 6 3.5720 -0.7708 -1.2100 20 6 2.0420 -0.7236 -1.2486 21 1 1.6458 -1.7388 -1.2694 22 6 1.5918 0.0181 -2.4807 23 8 0.9293 1.0228 -2.3727 24 8 1.9269 -0.4372 -3.6981 25 6 1.4583 0.3276 -4.8399 26 6 2.0169 1.7501 -4.7650 27 6 1.9356 -0.3398 -6.1314 28 6 -0.0708 0.3788 -4.8267 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5150 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6654 -1.7463 1.2545 33 1 1.6900 -0.2021 2.1390 34 1 5.1192 -1.4110 2.4102 35 1 3.5875 -2.2813 2.6649 36 1 4.3856 -1.6203 5.0735 37 1 4.6944 -1.7486 8.3944 38 1 5.1129 -1.4940 0.1106 39 1 3.6389 -2.4912 0.0851 40 1 3.9409 -1.3221 -2.0750 41 1 3.9680 0.2445 -1.2291 42 1 3.1063 1.7135 -4.7745 43 1 1.6648 2.3243 -5.6219 44 1 1.6773 2.2258 -3.8450 45 1 1.5380 -1.3532 -6.1850 46 1 1.5841 0.2346 -6.9885 47 1 3.0249 -0.3759 -6.1406 48 1 -0.4104 0.8545 -3.9067 49 1 -0.4225 0.9533 -5.6836 50 1 -0.4688 -0.6345 -4.8801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599586841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:03 Heat of formation + Delta-G solvation = -130.251443 kcal Electronic energy + Delta-G solvation = -29063.287380 eV Core-core repulsion = 25090.214614 eV Total energy + Delta-G solvation = -3973.072766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19879 -39.27673 -37.88305 -36.88351 -34.41564 -34.05647 -33.58395 -31.90989 -31.18706 -27.92892 -27.69797 -27.66119 -26.78053 -25.06647 -23.60528 -22.41345 -21.38409 -19.92287 -19.49096 -19.13105 -17.82263 -17.34072 -16.71393 -16.21311 -15.83709 -15.28722 -15.12450 -14.68525 -14.62029 -14.45735 -14.24319 -13.83444 -13.77881 -13.54363 -13.40371 -13.11123 -12.78914 -12.58153 -12.33296 -12.21247 -12.19150 -12.11929 -11.99126 -11.81780 -11.62542 -11.53055 -11.46154 -11.27140 -11.11165 -10.97471 -10.73060 -10.63416 -10.52021 -10.37808 -10.25722 -10.19345 -9.74526 -9.44273 -8.40913 -7.94503 -7.83228 -6.39239 -3.79761 2.15904 2.53019 3.19540 3.28070 3.34244 3.93879 3.98234 4.25424 4.39164 4.45504 4.46747 4.61740 4.67484 4.68462 5.04353 5.08495 5.17465 5.23533 5.24351 5.27437 5.38753 5.39180 5.44104 5.47597 5.55663 5.56844 5.60844 5.64394 5.68915 5.73163 5.77414 5.85258 5.90307 5.97281 5.98323 6.02387 6.10193 6.11626 6.29858 6.31543 6.47855 6.50395 6.59335 7.30941 7.43035 7.57773 7.77643 8.09494 8.65066 9.21186 9.57778 10.09927 10.78602 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.030599 B = 0.002334 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.852556 B =11992.334851 C =12411.329007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 H 0.090 0.910 4 C 0.062 3.938 5 N -0.517 5.517 6 C 0.047 3.953 7 C 0.443 3.557 8 O -0.575 6.575 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.057 3.943 19 C -0.104 4.104 20 C -0.078 4.078 21 H 0.101 0.899 22 C 0.471 3.529 23 O -0.495 6.495 24 O -0.352 6.352 25 C 0.115 3.885 26 C -0.183 4.183 27 C -0.140 4.140 28 C -0.183 4.183 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -3.027 -24.539 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.085 4.085 3 H 0.108 0.892 4 C -0.065 4.065 5 N -0.241 5.241 6 C -0.085 4.085 7 C 0.228 3.772 8 O -0.458 6.458 9 N -0.203 5.203 10 C -0.426 4.426 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.072 4.072 19 C -0.142 4.142 20 C -0.097 4.097 21 H 0.119 0.881 22 C 0.315 3.685 23 O -0.383 6.383 24 O -0.270 6.270 25 C 0.079 3.921 26 C -0.240 4.240 27 C -0.197 4.197 28 C -0.240 4.240 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.499 -1.582 -24.540 25.000 hybrid contribution -0.194 -0.887 0.874 1.261 sum -4.693 -2.470 -23.666 24.253 Atomic orbital electron populations 1.21973 0.94591 1.01332 1.03371 1.21018 0.95671 1.00787 0.91074 0.89164 1.22252 0.86777 0.98166 0.99331 1.61486 1.08444 1.53415 1.00784 1.21845 1.00776 0.95947 0.89885 1.19764 0.85210 0.88626 0.83553 1.90515 1.47418 1.23813 1.84080 1.41887 1.54723 1.19276 1.04440 1.19690 1.37559 1.00992 0.84399 0.87938 1.25250 0.97140 0.96864 0.98764 1.69612 1.42938 1.20078 1.21818 0.85871 0.78088 0.80275 0.80139 1.20463 1.20969 1.19417 1.22085 1.00342 0.94700 0.90028 1.21558 0.92006 1.02816 0.97841 1.21319 0.98314 1.00244 0.89844 0.88071 1.23707 0.76593 0.83665 0.84564 1.90534 1.35933 1.24849 1.86956 1.86562 1.71203 1.54322 1.14890 1.22152 0.94429 0.91374 0.84108 1.22488 1.01500 0.95428 1.04603 1.21844 1.02379 1.01308 0.94190 1.22484 0.94106 1.02797 1.04588 0.92043 0.90823 0.93524 0.95751 0.87886 0.89227 0.93551 0.77536 0.91936 0.90204 0.94910 0.90404 0.90399 0.91978 0.91249 0.89629 0.91568 0.90509 0.91469 0.89690 0.91208 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.91 37.16 0.33 -1.71 16 2 C -0.07 -0.95 2.02 -90.54 -0.18 -1.13 16 3 H 0.09 1.51 8.04 -51.93 -0.42 1.09 16 4 C 0.06 1.01 4.40 -3.83 -0.02 0.99 16 5 N -0.52 -8.49 4.35 -236.12 -1.03 -9.52 16 6 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 7 C 0.44 10.40 7.31 -10.99 -0.08 10.32 16 8 O -0.57 -15.46 14.29 5.55 0.08 -15.38 16 9 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 10 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 14 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.06 0.70 5.46 -3.84 -0.02 0.68 16 19 C -0.10 -1.17 5.31 -26.65 -0.14 -1.31 16 20 C -0.08 -0.92 2.20 -91.64 -0.20 -1.12 16 21 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.47 5.74 6.28 36.01 0.23 5.96 16 23 O -0.50 -6.86 9.33 -18.75 -0.17 -7.03 16 24 O -0.35 -3.86 9.82 -39.24 -0.39 -4.25 16 25 C 0.12 1.05 1.13 -90.62 -0.10 0.95 16 26 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 27 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16 28 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.99 5.75 -51.93 -0.30 0.69 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.10 2.05 6.06 -51.93 -0.31 1.74 16 34 H 0.09 1.42 7.98 -51.93 -0.41 1.01 16 35 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.08 0.90 8.01 -51.93 -0.42 0.49 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.99 5.89 -51.93 -0.31 0.68 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.93 5.89 -51.93 -0.31 0.62 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -31.29 389.33 -8.15 -39.44 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.65 Total: 9.76 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 0.49 Total: 3.20 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.36 Total: -47.76 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.48 Total: -26.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.29 -8.15 -39.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599586841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.809 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds