Wall clock time and date at job start Fri Apr 10 2020 18:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50214 * 2 1 4 4 C 1.53037 * 109.50465 * 120.07966 * 2 1 3 5 5 N 1.46852 * 109.52196 * 179.15763 * 4 2 1 6 6 C 1.46894 * 110.99840 * 174.16000 * 5 4 2 7 7 C 1.50697 * 109.47436 * 293.61408 * 6 5 4 8 8 O 1.21291 * 119.99911 * 353.73505 * 7 6 5 9 9 N 1.34778 * 119.99898 * 173.45699 * 7 6 5 10 10 C 1.37106 * 119.99830 * 180.27229 * 9 7 6 11 11 H 1.07995 * 120.00075 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99786 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99731 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46957 * 90.00334 * 14 12 10 16 16 H 1.48496 * 109.47089 * 210.00302 * 14 12 10 17 17 H 1.48500 * 109.47157 * 330.00131 * 14 12 10 18 18 C 1.46847 * 111.19943 * 298.26095 * 5 4 2 19 19 C 1.53032 * 109.52231 * 61.74221 * 18 5 4 20 20 C 1.53121 * 109.28051 * 300.81604 * 19 18 5 21 21 H 1.08991 * 109.57547 * 297.72274 * 20 19 18 22 22 C 1.50701 * 109.52409 * 177.56136 * 20 19 18 23 23 O 1.20827 * 119.99900 * 240.31933 * 22 20 19 24 24 O 1.34223 * 120.00055 * 60.31890 * 22 20 19 25 25 C 1.45202 * 116.99941 * 179.97438 * 24 22 20 26 26 C 1.53008 * 109.47005 * 60.00467 * 25 24 22 27 27 C 1.53002 * 109.47080 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.47548 * 300.00086 * 25 24 22 29 29 H 1.09002 * 109.46996 * 299.91213 * 1 2 3 30 30 H 1.08996 * 109.47362 * 59.92058 * 1 2 3 31 31 H 1.09004 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.45955 * 59.14810 * 4 2 1 33 33 H 1.08993 * 109.46697 * 299.17959 * 4 2 1 34 34 H 1.09006 * 109.47265 * 173.61143 * 6 5 4 35 35 H 1.09005 * 109.47135 * 53.61382 * 6 5 4 36 36 H 0.97001 * 120.00195 * 0.27492 * 9 7 6 37 37 H 0.97002 * 120.00025 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.45875 * 181.75384 * 18 5 4 39 39 H 1.08996 * 109.45995 * 301.72651 * 18 5 4 40 40 H 1.09001 * 109.50686 * 180.87705 * 19 18 5 41 41 H 1.09000 * 109.50810 * 60.75891 * 19 18 5 42 42 H 1.08999 * 109.47005 * 59.99735 * 26 25 24 43 43 H 1.08998 * 109.46682 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46971 * 299.99791 * 26 25 24 45 45 H 1.09000 * 109.46746 * 60.00237 * 27 25 24 46 46 H 1.08999 * 109.46785 * 180.02562 * 27 25 24 47 47 H 1.08999 * 109.47453 * 300.00586 * 27 25 24 48 48 H 1.09000 * 109.46844 * 59.99954 * 28 25 24 49 49 H 1.08991 * 109.47348 * 179.97438 * 28 25 24 50 50 H 1.09000 * 109.47134 * 300.00286 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2483 5 7 3.5093 -0.7409 1.2385 6 6 4.0372 -1.3042 2.4882 7 6 3.7047 -0.3836 3.6341 8 8 3.1901 0.6931 3.4174 9 7 3.9741 -0.7592 4.9002 10 6 3.6665 0.0760 5.9431 11 1 3.2079 1.0345 5.7501 12 6 3.9437 -0.3114 7.2484 13 7 4.5012 -1.4780 7.4832 14 14 3.5239 0.8261 8.6694 15 1 2.1449 0.5408 9.1411 16 1 4.4831 0.6043 9.7810 17 1 3.6098 2.2375 8.2156 18 6 4.0238 -1.4715 0.0732 19 6 3.5720 -0.7708 -1.2100 20 6 2.0420 -0.7236 -1.2486 21 1 1.6458 -1.7388 -1.2694 22 6 1.5918 0.0181 -2.4807 23 8 0.9293 1.0228 -2.3727 24 8 1.9269 -0.4372 -3.6981 25 6 1.4583 0.3276 -4.8399 26 6 2.0169 1.7501 -4.7650 27 6 1.9356 -0.3398 -6.1314 28 6 -0.0708 0.3788 -4.8267 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5150 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6654 -1.7463 1.2545 33 1 1.6900 -0.2021 2.1390 34 1 5.1192 -1.4110 2.4102 35 1 3.5875 -2.2813 2.6649 36 1 4.3856 -1.6203 5.0735 37 1 4.6944 -1.7486 8.3944 38 1 5.1129 -1.4940 0.1106 39 1 3.6389 -2.4912 0.0851 40 1 3.9409 -1.3221 -2.0750 41 1 3.9680 0.2445 -1.2291 42 1 3.1063 1.7135 -4.7745 43 1 1.6648 2.3243 -5.6219 44 1 1.6773 2.2258 -3.8450 45 1 1.5380 -1.3532 -6.1850 46 1 1.5841 0.2346 -6.9885 47 1 3.0249 -0.3759 -6.1406 48 1 -0.4104 0.8545 -3.9067 49 1 -0.4225 0.9533 -5.6836 50 1 -0.4688 -0.6345 -4.8801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599586841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:02 Heat of formation + Delta-G solvation = -150.217425 kcal Electronic energy + Delta-G solvation = -29064.153170 eV Core-core repulsion = 25090.214614 eV Total energy + Delta-G solvation = -3973.938556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12095 -40.62014 -39.40268 -37.92139 -35.98537 -35.22618 -34.85066 -33.22943 -32.96357 -29.34306 -28.36984 -28.27350 -27.89651 -26.79799 -24.98981 -23.38874 -22.46094 -20.99469 -20.86094 -20.43430 -19.84858 -18.27842 -17.74008 -17.52667 -16.94924 -16.66418 -16.39048 -16.38769 -15.74694 -15.48484 -15.41508 -15.28452 -15.05249 -14.82324 -14.51761 -14.16559 -13.79290 -13.61470 -13.47537 -13.32009 -13.23966 -13.04395 -12.97377 -12.90628 -12.87470 -12.74864 -12.64540 -12.43703 -12.39998 -12.29607 -12.12563 -12.00187 -11.82162 -11.65382 -11.51937 -11.34463 -11.29842 -10.70907 -10.24835 -9.97644 -9.14736 -8.45088 -5.93139 1.23155 1.37801 1.41285 1.53944 1.69565 2.08959 2.29254 2.77534 3.21969 3.37808 3.47250 3.69147 3.73496 3.77477 3.82919 3.97712 4.07237 4.17138 4.28609 4.34163 4.45543 4.46544 4.52480 4.58094 4.60619 4.60930 4.69471 4.71463 4.77315 4.83281 4.84778 4.86997 4.89855 4.90605 5.01012 5.12060 5.15070 5.21809 5.27143 5.28411 5.32221 5.36564 5.42404 5.63959 5.92296 6.12003 6.28277 6.63672 6.87310 7.15675 7.59885 8.16596 8.72355 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.030599 B = 0.002334 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.852556 B =11992.334851 C =12411.329007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 H 0.055 0.945 4 C 0.068 3.932 5 N -0.541 5.541 6 C 0.059 3.941 7 C 0.440 3.560 8 O -0.615 6.615 9 N -0.576 5.576 10 C -0.330 4.330 11 H 0.076 0.924 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.275 1.275 18 C 0.057 3.943 19 C -0.098 4.098 20 C -0.073 4.073 21 H 0.125 0.875 22 C 0.473 3.527 23 O -0.518 6.518 24 O -0.351 6.351 25 C 0.106 3.894 26 C -0.181 4.181 27 C -0.135 4.135 28 C -0.180 4.180 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.087 0.913 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 -4.886 -26.426 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 H 0.073 0.927 4 C -0.059 4.059 5 N -0.266 5.266 6 C -0.072 4.072 7 C 0.228 3.772 8 O -0.501 6.501 9 N -0.214 5.214 10 C -0.459 4.459 11 H 0.094 0.906 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.200 1.200 18 C -0.070 4.070 19 C -0.136 4.136 20 C -0.092 4.092 21 H 0.143 0.857 22 C 0.317 3.683 23 O -0.407 6.407 24 O -0.268 6.268 25 C 0.070 3.930 26 C -0.238 4.238 27 C -0.192 4.192 28 C -0.237 4.237 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.988 -3.475 -26.450 26.974 hybrid contribution -0.363 -0.267 1.373 1.445 sum -4.352 -3.742 -25.077 25.725 Atomic orbital electron populations 1.21912 0.94016 1.02308 1.02430 1.20841 0.96112 0.98973 0.91950 0.92682 1.22065 0.87140 0.98618 0.98111 1.61422 1.08441 1.55144 1.01567 1.21722 1.02399 0.94950 0.88093 1.20875 0.83215 0.88810 0.84348 1.90494 1.48724 1.26034 1.84834 1.41951 1.55408 1.19245 1.04806 1.19612 1.39304 1.00969 0.86045 0.90590 1.25996 0.96554 0.98292 1.00477 1.69667 1.42893 1.20902 1.22698 0.84967 0.78345 0.77994 0.77264 1.19686 1.19472 1.19994 1.22218 1.01237 0.95332 0.88238 1.21546 0.91277 1.02201 0.98533 1.21252 0.98872 1.00777 0.88324 0.85696 1.23712 0.76166 0.83250 0.85144 1.90549 1.36996 1.25821 1.87329 1.86545 1.71035 1.54459 1.14807 1.22468 0.94675 0.91389 0.84455 1.22461 1.01560 0.95808 1.03986 1.21860 1.02595 1.01657 0.93100 1.22453 0.94008 1.03158 1.04089 0.93616 0.91095 0.91517 0.93838 0.92573 0.86795 0.91290 0.77004 0.91361 0.88690 0.92595 0.87422 0.92244 0.91848 0.89336 0.92455 0.91029 0.88556 0.91188 0.92213 0.89385 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 8.91 71.98 0.64 -3.38 16 2 C -0.06 -1.73 2.02 -10.74 -0.02 -1.75 16 3 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 4 C 0.07 2.23 4.40 86.32 0.38 2.61 16 5 N -0.54 -17.29 4.35 -900.94 -3.92 -21.20 16 6 C 0.06 2.03 5.45 85.56 0.47 2.49 16 7 C 0.44 21.15 7.31 87.66 0.64 21.79 16 8 O -0.62 -34.70 14.29 -3.07 -0.04 -34.75 16 9 N -0.58 -29.81 5.29 -306.99 -1.62 -31.43 16 10 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 11 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 14 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 C 0.06 1.23 5.46 86.32 0.47 1.70 16 19 C -0.10 -1.97 5.31 30.65 0.16 -1.81 16 20 C -0.07 -1.61 2.20 -11.46 -0.03 -1.64 16 21 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 22 C 0.47 11.13 6.28 71.24 0.45 11.58 16 23 O -0.52 -14.66 9.33 21.96 0.20 -14.45 16 24 O -0.35 -7.05 9.82 -51.35 -0.50 -7.55 16 25 C 0.11 1.74 1.13 -10.79 -0.01 1.73 16 26 C -0.18 -3.17 8.37 71.98 0.60 -2.56 16 27 C -0.14 -1.40 8.85 71.98 0.64 -0.76 16 28 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.96 5.75 -2.39 -0.01 1.95 16 31 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 2.36 6.06 -2.39 -0.01 2.35 16 34 H 0.11 3.35 7.98 -2.38 -0.02 3.34 16 35 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 36 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 37 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 38 H 0.09 1.80 8.01 -2.39 -0.02 1.79 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.35 5.89 -2.39 -0.01 1.34 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.06 1.30 5.89 -2.39 -0.01 1.28 16 49 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -71.06 389.33 2.89 -68.17 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.19 Total: 35.98 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.27 Total: 9.28 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -5.26 Total: -102.32 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.34 Total: -56.75 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.06 2.89 -68.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599586841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.051 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds