Wall clock time and date at job start Fri Apr 10 2020 18:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53009 * 109.46640 * 2 1 4 4 C 1.52995 * 109.47158 * 240.00508 * 2 1 3 5 5 N 1.46894 * 109.47695 * 64.96212 * 4 2 1 6 6 C 1.47015 * 111.00243 * 210.38753 * 5 4 2 7 7 C 1.53098 * 109.25711 * 177.60681 * 6 5 4 8 8 O 1.43022 * 109.25992 * 56.84861 * 7 6 5 9 9 C 1.43015 * 113.73434 * 301.32936 * 8 7 6 10 10 C 1.47015 * 110.99949 * 86.74910 * 5 4 2 11 11 C 1.50696 * 109.47282 * 119.99921 * 2 1 3 12 12 O 1.21280 * 119.99994 * 120.37156 * 11 2 1 13 13 N 1.34782 * 119.99937 * 300.36737 * 11 2 1 14 14 C 1.47022 * 125.64537 * 354.49374 * 13 11 2 15 15 C 1.54331 * 107.39806 * 178.82676 * 14 13 11 16 16 C 1.55405 * 102.82968 * 337.97642 * 15 14 13 17 17 O 1.42895 * 110.89066 * 277.26988 * 16 15 14 18 18 C 1.50701 * 111.07117 * 153.48298 * 16 15 14 19 19 H 1.07997 * 120.00070 * 247.66455 * 18 16 15 20 20 C 1.37881 * 119.99587 * 67.66749 * 18 16 15 21 21 N 1.31514 * 119.99837 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99903 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47105 * 59.99460 * 22 20 18 24 24 H 1.48494 * 109.47393 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46959 * 299.99673 * 22 20 18 26 26 C 1.47418 * 125.64850 * 174.45269 * 13 11 2 27 27 H 1.09001 * 109.46577 * 295.95823 * 1 2 3 28 28 H 1.08997 * 109.47084 * 55.95489 * 1 2 3 29 29 H 1.08993 * 109.46727 * 175.95573 * 1 2 3 30 30 H 1.09005 * 109.46369 * 188.92457 * 3 2 1 31 31 H 1.08997 * 109.47092 * 308.92093 * 3 2 1 32 32 H 1.08997 * 109.47443 * 68.92930 * 3 2 1 33 33 H 1.09004 * 109.47439 * 184.96859 * 4 2 1 34 34 H 1.09000 * 109.46876 * 304.96399 * 4 2 1 35 35 H 1.08996 * 109.50379 * 297.53915 * 6 5 4 36 36 H 1.08995 * 109.50603 * 57.67021 * 6 5 4 37 37 H 1.08994 * 109.50991 * 296.91622 * 7 6 5 38 38 H 1.09007 * 109.54305 * 176.79956 * 7 6 5 39 39 H 1.08993 * 109.51011 * 298.72999 * 9 8 7 40 40 H 1.09007 * 109.54029 * 178.62582 * 9 8 7 41 41 H 1.09001 * 109.50868 * 302.32780 * 10 5 4 42 42 H 1.09002 * 109.50491 * 62.46228 * 10 5 4 43 43 H 1.08991 * 109.88240 * 298.31505 * 14 13 11 44 44 H 1.08994 * 109.88493 * 59.33818 * 14 13 11 45 45 H 1.09000 * 110.71787 * 96.24653 * 15 14 13 46 46 H 1.08998 * 110.72143 * 219.52448 * 15 14 13 47 47 H 0.96696 * 114.00073 * 292.23060 * 17 16 15 48 48 H 0.97001 * 119.99442 * 180.02562 * 21 20 18 49 49 H 1.09006 * 110.36458 * 323.00349 * 26 13 11 50 50 H 1.09001 * 110.37056 * 85.32281 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6507 0.0371 -2.4457 6 6 1.4476 -0.8583 -3.5939 7 6 0.9864 -0.0359 -4.8001 8 8 1.9515 0.9838 -5.0727 9 6 2.1735 1.8743 -3.9758 10 6 2.6468 1.0713 -2.7613 11 6 2.0324 -0.7104 1.2304 12 8 2.7352 -1.6925 1.1192 13 7 1.7007 -0.2542 2.4546 14 6 0.9564 0.9822 2.7355 15 6 0.7855 1.0802 4.2662 16 6 0.9544 -0.3942 4.7274 17 8 -0.2705 -1.1162 4.5849 18 6 1.4573 -0.4638 6.1463 19 1 2.4487 -0.8408 6.3500 20 6 0.6517 -0.0463 7.1845 21 7 -0.5558 0.4122 6.9364 22 14 1.2746 -0.1332 8.9433 23 1 2.4951 0.7019 9.0780 24 1 0.2254 0.3703 9.8656 25 1 1.5985 -1.5417 9.2847 26 6 2.0235 -0.9127 3.7334 27 1 -0.3632 0.4498 0.9240 28 1 -0.3633 0.5753 -0.8515 29 1 -0.3632 -1.0251 -0.0725 30 1 3.1183 1.4467 -0.1594 31 1 1.5523 2.0003 -0.7995 32 1 1.8127 1.9084 0.9589 33 1 3.1265 -0.7989 -1.2059 34 1 1.6059 -1.7199 -1.2949 35 1 2.3844 -1.3614 -3.8332 36 1 0.6881 -1.6000 -3.3471 37 1 0.0231 0.4242 -4.5800 38 1 0.8890 -0.6865 -5.6693 39 1 1.2448 2.3899 -3.7318 40 1 2.9349 2.6053 -4.2480 41 1 2.7625 1.7380 -1.9068 42 1 3.6028 0.5989 -2.9873 43 1 1.5157 1.8429 2.3692 44 1 -0.0212 0.9436 2.2552 45 1 1.5607 1.7110 4.7011 46 1 -0.2059 1.4550 4.5204 47 1 -0.9699 -0.8268 5.1866 48 1 -1.1224 0.7062 7.6667 49 1 1.9526 -1.9956 3.6309 50 1 3.0213 -0.6269 4.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602165853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:12 Heat of formation + Delta-G solvation = -104.003304 kcal Electronic energy + Delta-G solvation = -29962.802528 eV Core-core repulsion = 25990.867966 eV Total energy + Delta-G solvation = -3971.934561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46280 -39.44668 -37.51518 -36.41258 -34.60596 -33.65455 -32.16598 -31.48241 -29.77430 -28.70989 -27.95014 -27.35038 -25.31290 -24.83657 -24.03541 -22.90160 -20.96535 -20.53122 -19.65426 -18.54803 -17.21870 -16.63682 -16.39128 -16.08165 -15.74539 -15.45685 -15.25237 -15.05510 -15.00942 -14.56364 -14.31298 -14.23563 -13.66974 -13.39600 -13.23850 -12.85257 -12.71891 -12.57734 -12.26265 -11.91554 -11.88828 -11.77216 -11.62600 -11.59295 -11.45033 -11.34530 -11.13185 -11.00117 -10.81951 -10.71454 -10.53697 -10.50183 -10.39048 -10.00485 -9.83951 -9.45888 -9.15262 -8.70134 -8.52611 -8.23218 -7.95292 -6.33024 -4.40662 3.07635 3.19079 3.24251 3.26715 3.33522 3.61800 3.84437 4.23685 4.61954 4.68855 4.75975 4.83622 4.88745 4.92718 4.96512 5.02602 5.07980 5.29681 5.33921 5.38937 5.44952 5.50701 5.55690 5.57579 5.60911 5.67116 5.74184 5.79156 5.85225 5.87109 5.95691 6.04578 6.13958 6.20790 6.36639 6.41586 6.54258 6.65702 6.78129 6.79443 6.86933 6.90139 6.96060 7.26499 7.29666 7.70417 7.96294 8.15087 8.59990 8.65337 9.28318 9.45021 10.74582 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.002654 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.286215 B =10545.824582 C =10641.006889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.160 4.160 4 C 0.081 3.919 5 N -0.531 5.531 6 C 0.018 3.982 7 C 0.065 3.935 8 O -0.389 6.389 9 C 0.064 3.936 10 C -0.003 4.003 11 C 0.532 3.468 12 O -0.560 6.560 13 N -0.601 5.601 14 C 0.088 3.912 15 C -0.141 4.141 16 C 0.250 3.750 17 O -0.584 6.584 18 C -0.536 4.536 19 H 0.064 0.936 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.120 3.880 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.385 0.615 48 H 0.270 0.730 49 H 0.069 0.931 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 5.006 -17.988 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.216 4.216 4 C -0.047 4.047 5 N -0.256 5.256 6 C -0.110 4.110 7 C -0.012 4.012 8 O -0.307 6.307 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.320 3.680 12 O -0.439 6.439 13 N -0.333 5.333 14 C -0.034 4.034 15 C -0.180 4.180 16 C 0.209 3.791 17 O -0.395 6.395 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.002 4.002 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.237 0.763 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.287 4.472 -18.567 19.142 hybrid contribution 0.603 -0.146 1.616 1.731 sum 1.890 4.326 -16.952 17.597 Atomic orbital electron populations 1.21957 0.92044 1.02553 1.03167 1.20548 0.97979 0.96279 0.92134 1.22400 1.00605 0.94748 1.03861 1.21889 0.99123 0.95989 0.87680 1.62037 1.45633 1.14273 1.03658 1.22804 1.01194 0.95611 0.91402 1.22657 0.91846 0.89727 0.96966 1.87969 1.61691 1.43103 1.37974 1.22671 1.01045 0.91698 0.85864 1.23333 0.93683 0.96092 0.99990 1.20106 0.80118 0.84223 0.83569 1.90641 1.38886 1.27913 1.86486 1.48501 1.54555 1.24533 1.05671 1.22642 0.95523 0.85761 0.99512 1.23272 1.02830 1.01710 0.90142 1.19610 0.82131 0.85776 0.91534 1.86095 1.24781 1.63735 1.64843 1.21448 1.01754 1.43472 0.90746 0.91744 1.24987 0.94758 0.93505 0.99733 1.69551 1.08302 1.42775 1.33109 0.86454 0.78511 0.78717 0.83178 1.20053 1.21088 1.19993 1.22377 0.98454 0.97787 0.81597 0.91119 0.90903 0.92810 0.92715 0.90511 0.90599 0.93191 0.90481 0.94015 0.89523 0.92224 0.88656 0.92250 0.88671 0.87682 0.94130 0.92031 0.91273 0.91456 0.89887 0.76257 0.92007 0.91278 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.18 37.16 0.30 -1.55 16 2 C -0.07 -0.92 0.57 -155.66 -0.09 -1.00 16 3 C -0.16 -1.86 6.62 37.16 0.25 -1.62 16 4 C 0.08 1.07 3.59 -3.83 -0.01 1.05 16 5 N -0.53 -5.69 3.90 -234.31 -0.91 -6.61 16 6 C 0.02 0.17 5.52 -3.71 -0.02 0.15 16 7 C 0.07 0.56 7.01 37.21 0.26 0.82 16 8 O -0.39 -4.08 10.83 -35.23 -0.38 -4.47 16 9 C 0.06 0.56 7.01 37.21 0.26 0.82 16 10 C 0.00 -0.03 4.89 -3.71 -0.02 -0.05 16 11 C 0.53 9.90 6.58 -10.98 -0.07 9.82 16 12 O -0.56 -12.22 16.22 5.56 0.09 -12.13 16 13 N -0.60 -11.61 3.31 -170.52 -0.56 -12.17 16 14 C 0.09 1.51 5.40 -3.06 -0.02 1.49 16 15 C -0.14 -2.91 5.66 -24.76 -0.14 -3.05 16 16 C 0.25 5.91 0.89 -89.48 -0.08 5.83 16 17 O -0.58 -14.71 13.18 -35.23 -0.46 -15.17 16 18 C -0.54 -13.70 8.25 -34.44 -0.28 -13.99 16 19 H 0.06 1.64 7.77 -52.49 -0.41 1.24 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 21 N -0.90 -22.64 10.79 55.43 0.60 -22.04 16 22 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.12 2.65 6.06 -2.53 -0.02 2.64 16 27 H 0.07 0.99 4.52 -51.93 -0.23 0.75 16 28 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.63 7.30 -51.93 -0.38 0.25 16 31 H 0.08 0.77 6.37 -51.93 -0.33 0.43 16 32 H 0.08 0.92 4.11 -51.93 -0.21 0.71 16 33 H 0.05 0.72 7.62 -51.93 -0.40 0.33 16 34 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.77 8.00 -51.93 -0.42 0.35 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 41 H 0.11 0.96 4.01 -51.93 -0.21 0.75 16 42 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 43 H 0.06 0.91 5.49 -51.93 -0.28 0.63 16 44 H 0.07 1.13 5.13 -51.93 -0.27 0.87 16 45 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 46 H 0.08 1.79 7.86 -51.93 -0.41 1.38 16 47 H 0.39 9.79 6.93 45.56 0.32 10.11 16 48 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 49 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 50 H 0.07 1.50 8.01 -51.93 -0.42 1.08 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -28.54 370.67 -8.23 -36.77 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -7.38 Total: 12.25 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.23 Total: 3.11 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.88 Total: -40.82 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.76 Total: -31.76 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.54 -8.23 -36.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602165853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.233 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds