Wall clock time and date at job start Fri Apr 10 2020 18:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53009 * 109.46640 * 2 1 4 4 C 1.52995 * 109.47158 * 240.00508 * 2 1 3 5 5 N 1.46894 * 109.47695 * 64.96212 * 4 2 1 6 6 C 1.47015 * 111.00243 * 210.38753 * 5 4 2 7 7 C 1.53098 * 109.25711 * 177.60681 * 6 5 4 8 8 O 1.43022 * 109.25992 * 56.84861 * 7 6 5 9 9 C 1.43015 * 113.73434 * 301.32936 * 8 7 6 10 10 C 1.47015 * 110.99949 * 86.74910 * 5 4 2 11 11 C 1.50696 * 109.47282 * 119.99921 * 2 1 3 12 12 O 1.21280 * 119.99994 * 120.37156 * 11 2 1 13 13 N 1.34782 * 119.99937 * 300.36737 * 11 2 1 14 14 C 1.47022 * 125.64537 * 354.49374 * 13 11 2 15 15 C 1.54331 * 107.39806 * 178.82676 * 14 13 11 16 16 C 1.55405 * 102.82968 * 337.97642 * 15 14 13 17 17 O 1.42895 * 110.89066 * 277.26988 * 16 15 14 18 18 C 1.50701 * 111.07117 * 153.48298 * 16 15 14 19 19 H 1.07997 * 120.00070 * 247.66455 * 18 16 15 20 20 C 1.37881 * 119.99587 * 67.66749 * 18 16 15 21 21 N 1.31514 * 119.99837 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99903 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47105 * 59.99460 * 22 20 18 24 24 H 1.48494 * 109.47393 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46959 * 299.99673 * 22 20 18 26 26 C 1.47418 * 125.64850 * 174.45269 * 13 11 2 27 27 H 1.09001 * 109.46577 * 295.95823 * 1 2 3 28 28 H 1.08997 * 109.47084 * 55.95489 * 1 2 3 29 29 H 1.08993 * 109.46727 * 175.95573 * 1 2 3 30 30 H 1.09005 * 109.46369 * 188.92457 * 3 2 1 31 31 H 1.08997 * 109.47092 * 308.92093 * 3 2 1 32 32 H 1.08997 * 109.47443 * 68.92930 * 3 2 1 33 33 H 1.09004 * 109.47439 * 184.96859 * 4 2 1 34 34 H 1.09000 * 109.46876 * 304.96399 * 4 2 1 35 35 H 1.08996 * 109.50379 * 297.53915 * 6 5 4 36 36 H 1.08995 * 109.50603 * 57.67021 * 6 5 4 37 37 H 1.08994 * 109.50991 * 296.91622 * 7 6 5 38 38 H 1.09007 * 109.54305 * 176.79956 * 7 6 5 39 39 H 1.08993 * 109.51011 * 298.72999 * 9 8 7 40 40 H 1.09007 * 109.54029 * 178.62582 * 9 8 7 41 41 H 1.09001 * 109.50868 * 302.32780 * 10 5 4 42 42 H 1.09002 * 109.50491 * 62.46228 * 10 5 4 43 43 H 1.08991 * 109.88240 * 298.31505 * 14 13 11 44 44 H 1.08994 * 109.88493 * 59.33818 * 14 13 11 45 45 H 1.09000 * 110.71787 * 96.24653 * 15 14 13 46 46 H 1.08998 * 110.72143 * 219.52448 * 15 14 13 47 47 H 0.96696 * 114.00073 * 292.23060 * 17 16 15 48 48 H 0.97001 * 119.99442 * 180.02562 * 21 20 18 49 49 H 1.09006 * 110.36458 * 323.00349 * 26 13 11 50 50 H 1.09001 * 110.37056 * 85.32281 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6507 0.0371 -2.4457 6 6 1.4476 -0.8583 -3.5939 7 6 0.9864 -0.0359 -4.8001 8 8 1.9515 0.9838 -5.0727 9 6 2.1735 1.8743 -3.9758 10 6 2.6468 1.0713 -2.7613 11 6 2.0324 -0.7104 1.2304 12 8 2.7352 -1.6925 1.1192 13 7 1.7007 -0.2542 2.4546 14 6 0.9564 0.9822 2.7355 15 6 0.7855 1.0802 4.2662 16 6 0.9544 -0.3942 4.7274 17 8 -0.2705 -1.1162 4.5849 18 6 1.4573 -0.4638 6.1463 19 1 2.4487 -0.8408 6.3500 20 6 0.6517 -0.0463 7.1845 21 7 -0.5558 0.4122 6.9364 22 14 1.2746 -0.1332 8.9433 23 1 2.4951 0.7019 9.0780 24 1 0.2254 0.3703 9.8656 25 1 1.5985 -1.5417 9.2847 26 6 2.0235 -0.9127 3.7334 27 1 -0.3632 0.4498 0.9240 28 1 -0.3633 0.5753 -0.8515 29 1 -0.3632 -1.0251 -0.0725 30 1 3.1183 1.4467 -0.1594 31 1 1.5523 2.0003 -0.7995 32 1 1.8127 1.9084 0.9589 33 1 3.1265 -0.7989 -1.2059 34 1 1.6059 -1.7199 -1.2949 35 1 2.3844 -1.3614 -3.8332 36 1 0.6881 -1.6000 -3.3471 37 1 0.0231 0.4242 -4.5800 38 1 0.8890 -0.6865 -5.6693 39 1 1.2448 2.3899 -3.7318 40 1 2.9349 2.6053 -4.2480 41 1 2.7625 1.7380 -1.9068 42 1 3.6028 0.5989 -2.9873 43 1 1.5157 1.8429 2.3692 44 1 -0.0212 0.9436 2.2552 45 1 1.5607 1.7110 4.7011 46 1 -0.2059 1.4550 4.5204 47 1 -0.9699 -0.8268 5.1866 48 1 -1.1224 0.7062 7.6667 49 1 1.9526 -1.9956 3.6309 50 1 3.0213 -0.6269 4.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602165853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:11 Heat of formation + Delta-G solvation = -125.045957 kcal Electronic energy + Delta-G solvation = -29963.715006 eV Core-core repulsion = 25990.867966 eV Total energy + Delta-G solvation = -3972.847039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73756 -40.45217 -39.09452 -37.54533 -36.25095 -34.81689 -34.13005 -32.20468 -31.43666 -30.15941 -29.09720 -28.34115 -27.09957 -25.88001 -24.78155 -24.33880 -22.29847 -21.48431 -21.28394 -19.96940 -19.10384 -17.72413 -17.27606 -17.14871 -17.05297 -16.84320 -16.61748 -16.31643 -16.05288 -15.96898 -15.62147 -15.36624 -15.08251 -14.53832 -14.44197 -14.30856 -13.96181 -13.75775 -13.70392 -13.38516 -13.26050 -13.19527 -12.99650 -12.92029 -12.71830 -12.59460 -12.37363 -12.28938 -12.21950 -12.10589 -11.90272 -11.66162 -11.63399 -11.37445 -11.29017 -10.78484 -10.64197 -10.43431 -10.12251 -9.52903 -9.42257 -8.25241 -6.39484 1.43114 1.45394 1.51977 1.60628 1.99271 2.39582 2.75749 2.99415 3.01374 3.48379 3.69653 3.80972 3.85101 3.96339 4.02827 4.05368 4.14939 4.19756 4.22486 4.26138 4.32686 4.44067 4.52866 4.56695 4.61032 4.62718 4.71381 4.76086 4.80826 4.83672 4.84820 4.89731 4.95368 4.97454 5.06203 5.10113 5.19133 5.30277 5.36708 5.42765 5.48741 5.53444 5.77582 5.86759 5.96468 6.05951 6.22067 6.61246 6.66035 7.13073 7.31706 7.46519 8.80793 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.002654 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.286215 B =10545.824582 C =10641.006889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.154 4.154 4 C 0.090 3.910 5 N -0.525 5.525 6 C 0.016 3.984 7 C 0.067 3.933 8 O -0.407 6.407 9 C 0.065 3.935 10 C -0.004 4.004 11 C 0.525 3.475 12 O -0.599 6.599 13 N -0.603 5.603 14 C 0.094 3.906 15 C -0.131 4.131 16 C 0.237 3.763 17 O -0.595 6.595 18 C -0.563 4.563 19 H 0.054 0.946 20 C 0.037 3.963 21 N -0.908 5.908 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.280 1.280 26 C 0.124 3.876 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.381 0.619 48 H 0.273 0.727 49 H 0.042 0.958 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 7.038 -19.269 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C -0.210 4.210 4 C -0.039 4.039 5 N -0.250 5.250 6 C -0.112 4.112 7 C -0.010 4.010 8 O -0.326 6.326 9 C -0.012 4.012 10 C -0.132 4.132 11 C 0.315 3.685 12 O -0.481 6.481 13 N -0.334 5.334 14 C -0.027 4.027 15 C -0.170 4.170 16 C 0.197 3.803 17 O -0.405 6.405 18 C -0.601 4.601 19 H 0.073 0.927 20 C -0.164 4.164 21 N -0.547 5.547 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.206 1.206 26 C 0.001 3.999 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.046 0.954 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.233 0.767 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.763 6.528 -19.867 20.926 hybrid contribution 0.774 -0.847 2.005 2.310 sum 1.537 5.681 -17.862 18.806 Atomic orbital electron populations 1.21914 0.91024 1.02152 1.03866 1.20545 0.98495 0.97251 0.89727 1.22398 1.00997 0.92881 1.04754 1.21699 0.97806 0.95688 0.88670 1.62063 1.45571 1.14172 1.03157 1.22885 1.00983 0.95867 0.91486 1.22749 0.91675 0.89551 0.96977 1.87952 1.62205 1.43642 1.38837 1.22793 1.02051 0.91489 0.84874 1.23406 0.92912 0.95868 1.00986 1.21069 0.79223 0.83860 0.84393 1.90617 1.40659 1.29787 1.87031 1.48566 1.54827 1.25001 1.05037 1.22732 0.96811 0.85952 0.97164 1.23067 1.02108 0.99260 0.92582 1.19781 0.81666 0.87631 0.91270 1.86082 1.25235 1.64507 1.64686 1.21676 1.01748 1.44380 0.92311 0.92748 1.25591 0.94987 0.93121 1.02715 1.69607 1.08644 1.42493 1.33976 0.85585 0.78250 0.78255 0.79356 1.19573 1.20342 1.20558 1.22137 0.98196 0.96406 0.83182 0.91631 0.88459 0.94109 0.92503 0.87914 0.90654 0.94982 0.91864 0.95053 0.88898 0.91451 0.87027 0.91267 0.87011 0.86778 0.95357 0.88516 0.89732 0.91742 0.90840 0.76715 0.91754 0.93979 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.18 71.98 0.59 -2.62 16 2 C -0.06 -1.49 0.57 -52.93 -0.03 -1.52 16 3 C -0.15 -3.12 6.62 71.99 0.48 -2.65 16 4 C 0.09 2.30 3.59 86.30 0.31 2.61 16 5 N -0.52 -10.22 3.90 -895.23 -3.49 -13.71 16 6 C 0.02 0.28 5.52 86.31 0.48 0.76 16 7 C 0.07 1.00 7.01 72.01 0.50 1.51 16 8 O -0.41 -7.58 10.83 -148.98 -1.61 -9.19 16 9 C 0.06 0.94 7.01 72.01 0.50 1.45 16 10 C 0.00 -0.07 4.89 86.31 0.42 0.35 16 11 C 0.52 19.44 6.58 87.65 0.58 20.01 16 12 O -0.60 -26.82 16.22 -3.03 -0.05 -26.87 16 13 N -0.60 -23.13 3.31 -811.80 -2.69 -25.82 16 14 C 0.09 3.09 5.40 86.73 0.47 3.56 16 15 C -0.13 -5.36 5.66 31.87 0.18 -5.18 16 16 C 0.24 11.36 0.89 -10.06 -0.01 11.35 16 17 O -0.59 -30.53 13.18 -148.98 -1.96 -32.50 16 18 C -0.56 -29.26 8.25 25.60 0.21 -29.05 16 19 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 20 C 0.04 1.87 5.30 84.66 0.45 2.31 16 21 N -0.91 -45.64 10.79 21.45 0.23 -45.40 16 22 Si 0.96 40.66 29.54 68.60 2.03 42.69 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.12 5.63 6.06 86.86 0.53 6.16 16 27 H 0.07 1.67 4.52 -2.39 -0.01 1.65 16 28 H 0.10 1.90 7.86 -2.39 -0.02 1.88 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.15 7.30 -2.38 -0.02 1.14 16 31 H 0.10 1.60 6.37 -2.39 -0.02 1.58 16 32 H 0.08 1.55 4.11 -2.39 -0.01 1.54 16 33 H 0.03 0.93 7.62 -2.38 -0.02 0.91 16 34 H 0.06 1.77 7.69 -2.39 -0.02 1.75 16 35 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 1.51 8.00 -2.39 -0.02 1.50 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.11 1.73 4.01 -2.39 -0.01 1.72 16 42 H 0.03 0.56 8.11 -2.39 -0.02 0.54 16 43 H 0.10 2.55 5.49 -2.39 -0.01 2.53 16 44 H 0.08 2.56 5.13 -2.39 -0.01 2.55 16 45 H 0.06 2.63 8.04 -2.39 -0.02 2.61 16 46 H 0.07 3.13 7.86 -2.39 -0.02 3.11 16 47 H 0.38 19.74 6.93 -74.06 -0.51 19.23 16 48 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 49 H 0.04 2.10 8.09 -2.38 -0.02 2.08 16 50 H 0.07 3.08 8.01 -2.39 -0.02 3.06 16 Total: -1.00 -62.39 370.67 -1.45 -63.85 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.44 Total: 37.92 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.66 Total: 9.05 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -5.95 Total: -84.94 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -3.63 Total: -68.56 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -62.39 -1.45 -63.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602165853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.200 kcal (2) G-P(sol) polarization free energy of solvation -62.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds