Wall clock time and date at job start Fri Apr 10 2020 18:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47341 * 2 1 4 4 O 1.42903 * 109.47148 * 119.99940 * 2 1 3 5 5 C 1.42900 * 114.00146 * 269.99937 * 4 2 1 6 6 C 1.52997 * 109.47517 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.42032 * 52.68656 * 6 5 4 8 8 C 1.54477 * 110.37308 * 175.00102 * 6 5 4 9 9 C 1.54507 * 104.06510 * 142.80822 * 8 6 5 10 10 C 1.54483 * 104.06211 * 359.97438 * 9 8 6 11 11 O 1.44428 * 104.89902 * 335.96812 * 10 9 8 12 12 C 1.50703 * 109.47213 * 239.99762 * 2 1 3 13 13 O 1.21283 * 119.99921 * 245.00308 * 12 2 1 14 14 N 1.34772 * 119.99573 * 64.99825 * 12 2 1 15 15 C 1.47077 * 120.88357 * 359.72444 * 14 12 2 16 16 C 1.53700 * 108.27580 * 128.75359 * 15 14 12 17 17 N 1.46901 * 109.25743 * 54.08312 * 16 15 14 18 18 C 1.46894 * 111.00370 * 172.60673 * 17 16 15 19 19 C 1.50700 * 109.47260 * 294.30200 * 18 17 16 20 20 H 1.08000 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00392 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99906 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47079 * 90.00407 * 23 21 19 25 25 H 1.48502 * 109.47015 * 210.00524 * 23 21 19 26 26 H 1.48496 * 109.47260 * 329.99951 * 23 21 19 27 27 C 1.46906 * 111.26830 * 296.75705 * 17 16 15 28 28 C 1.47082 * 120.87869 * 180.02562 * 14 12 2 29 29 H 1.09006 * 109.47070 * 299.99944 * 1 2 3 30 30 H 1.08994 * 109.47403 * 60.00246 * 1 2 3 31 31 H 1.09005 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47037 * 59.99798 * 5 4 2 33 33 H 1.09008 * 109.47052 * 300.00240 * 5 4 2 34 34 H 1.09000 * 110.51486 * 24.16264 * 8 6 5 35 35 H 1.09000 * 110.62726 * 261.50882 * 8 6 5 36 36 H 1.09005 * 110.51421 * 241.35469 * 9 8 6 37 37 H 1.09001 * 110.51335 * 118.64380 * 9 8 6 38 38 H 1.09002 * 110.37322 * 94.85326 * 10 9 8 39 39 H 1.08999 * 110.37312 * 217.08002 * 10 9 8 40 40 H 1.08997 * 109.62615 * 248.52137 * 15 14 12 41 41 H 1.08995 * 109.62880 * 9.10019 * 15 14 12 42 42 H 1.08996 * 109.65157 * 294.08036 * 16 15 14 43 43 H 1.08999 * 109.42279 * 173.94388 * 16 15 14 44 44 H 1.09006 * 109.46972 * 54.29593 * 18 17 16 45 45 H 1.08999 * 109.47779 * 174.30206 * 18 17 16 46 46 H 0.97002 * 120.00355 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.48983 * 303.14547 * 27 17 16 48 48 H 1.08996 * 109.51566 * 183.07672 * 27 17 16 49 49 H 1.09005 * 109.62981 * 350.89751 * 28 14 12 50 50 H 1.09003 * 109.63024 * 111.47551 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7091 -0.6405 3.4789 7 1 3.5853 -1.2210 3.1901 8 6 3.0447 0.2829 4.6709 9 6 2.6050 -0.5287 5.9100 10 6 2.0550 -1.8462 5.3199 11 8 1.6649 -1.5140 3.9696 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7468 -1.1214 14 7 1.7918 -0.1942 -2.4519 15 6 1.0361 1.0579 -2.6069 16 6 1.8491 2.0035 -3.5054 17 7 2.1756 1.3163 -4.7620 18 6 2.7995 2.2388 -5.7199 19 6 1.8007 3.2911 -6.1273 20 1 0.8022 3.2758 -5.7162 21 6 2.1616 4.2734 -7.0251 22 7 3.3774 4.2917 -7.5262 23 14 0.9237 5.5782 -7.5295 24 1 1.0199 6.7358 -6.6044 25 1 1.2139 6.0264 -8.9152 26 1 -0.4468 5.0095 -7.4701 27 6 3.0322 0.1470 -4.5228 28 6 2.2726 -0.8717 -3.6657 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.2538 0.6547 2.5589 33 1 2.9320 0.9514 2.0450 34 1 2.4809 1.2133 4.6040 35 1 4.1146 0.4877 4.7086 36 1 1.8236 0.0005 6.4556 37 1 3.4579 -0.7271 6.5590 38 1 2.8308 -2.6119 5.3132 39 1 1.1917 -2.1867 5.8915 40 1 0.0713 0.8485 -3.0687 41 1 0.8855 1.5180 -1.6303 42 1 2.7700 2.2901 -2.9976 43 1 1.2596 2.8947 -3.7209 44 1 3.6618 2.7170 -5.2549 45 1 3.1227 1.6842 -6.6008 46 1 3.6312 4.9825 -8.1580 47 1 3.9367 0.4595 -4.0007 48 1 3.3013 -0.3083 -5.4758 49 1 2.9400 -1.6880 -3.3895 50 1 1.4241 -1.2627 -4.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:31 Heat of formation + Delta-G solvation = -112.445227 kcal Electronic energy + Delta-G solvation = -28515.189948 eV Core-core repulsion = 24542.889317 eV Total energy + Delta-G solvation = -3972.300631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32780 -39.70973 -38.04623 -37.07229 -34.52876 -32.79122 -32.49209 -32.03822 -30.81527 -29.99684 -28.23527 -26.02520 -25.62464 -23.97807 -23.31310 -22.31596 -21.85828 -21.39005 -20.50614 -18.85125 -17.64362 -17.01666 -16.50214 -16.35472 -16.11332 -16.01559 -15.64041 -15.15567 -14.78317 -14.51191 -14.48704 -14.16966 -14.04162 -13.87720 -13.65528 -13.33110 -12.99834 -12.73328 -12.42824 -12.20818 -12.17781 -12.05803 -11.92199 -11.72612 -11.57985 -11.41043 -11.31228 -11.09637 -11.00378 -10.94058 -10.77925 -10.63834 -10.55669 -10.06762 -10.01712 -9.90096 -9.37467 -9.30712 -8.53750 -8.44699 -7.36319 -6.09280 -4.11543 2.70054 2.74468 3.26619 3.33742 3.37184 3.52909 3.59728 4.17985 4.35529 4.38046 4.47513 4.52884 4.66633 4.76366 4.80170 4.80804 4.91831 5.01686 5.07832 5.16296 5.21932 5.26960 5.29692 5.32537 5.39289 5.41357 5.45123 5.47154 5.57784 5.59069 5.61724 5.66227 5.73767 5.82448 5.99135 6.01979 6.26358 6.40724 6.41759 6.50203 6.63235 6.92760 7.18661 7.24449 7.52544 7.70984 7.98110 8.08610 8.28604 8.43874 8.95574 9.53073 11.01456 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.002238 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.128206 B =12508.478947 C =13068.214646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 H 0.085 0.915 4 O -0.350 6.350 5 C 0.065 3.935 6 C 0.078 3.922 7 H 0.080 0.920 8 C -0.149 4.149 9 C -0.155 4.155 10 C 0.041 3.959 11 O -0.361 6.361 12 C 0.516 3.484 13 O -0.529 6.529 14 N -0.606 5.606 15 C 0.104 3.896 16 C 0.049 3.951 17 N -0.535 5.535 18 C 0.193 3.807 19 C -0.510 4.510 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.041 3.959 28 C 0.120 3.880 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.025 0.975 43 H 0.098 0.902 44 H -0.009 1.009 45 H 0.032 0.968 46 H 0.262 0.738 47 H 0.027 0.973 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -7.016 24.003 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.268 6.268 5 C -0.012 4.012 6 C 0.020 3.980 7 H 0.098 0.902 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.036 4.036 11 O -0.280 6.280 12 C 0.302 3.698 13 O -0.405 6.405 14 N -0.341 5.341 15 C -0.019 4.019 16 C -0.080 4.080 17 N -0.260 5.260 18 C 0.068 3.932 19 C -0.548 4.548 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.088 4.088 28 C -0.003 4.003 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.009 0.991 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.252 -7.916 23.614 25.117 hybrid contribution 0.366 1.553 0.062 1.597 sum -2.885 -6.363 23.677 24.686 Atomic orbital electron populations 1.22392 0.93424 1.04122 1.03473 1.21864 0.95334 0.96100 0.85584 0.89758 1.88087 1.86528 1.33614 1.18523 1.22664 1.00359 0.92486 0.85664 1.23032 0.91427 0.91008 0.92530 0.90192 1.22916 1.02538 0.99402 0.93816 1.22938 1.01646 0.96683 0.97965 1.23410 1.00243 0.96250 0.83694 1.89306 1.44499 1.66922 1.27296 1.20280 0.79949 0.85478 0.84060 1.90685 1.40315 1.23473 1.86065 1.48153 1.55233 1.25241 1.05480 1.22298 0.95811 0.83894 0.99924 1.22436 0.98530 0.96864 0.90184 1.62076 1.44774 1.08914 1.10272 1.19733 0.93525 0.90063 0.89838 1.21128 0.98415 1.09864 1.25439 0.91789 1.25003 0.95400 0.98059 0.96166 1.69955 1.18228 1.34481 1.30963 0.86492 0.81521 0.81566 0.77798 1.20749 1.21257 1.19732 1.22421 0.94142 0.93191 0.99084 1.21770 0.99224 0.95251 0.84010 0.91283 0.90064 0.91027 0.92149 0.91707 0.90305 0.89984 0.90537 0.90394 0.92213 0.89073 0.90223 0.90053 0.95678 0.88392 0.99113 0.94966 0.92849 0.95527 0.89966 0.89368 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.11 37.16 0.34 -1.49 16 2 C 0.07 0.91 2.30 -27.88 -0.06 0.85 16 3 H 0.08 0.89 7.06 -51.93 -0.37 0.52 16 4 O -0.35 -4.92 9.53 -56.72 -0.54 -5.46 16 5 C 0.07 0.66 5.35 37.16 0.20 0.86 16 6 C 0.08 0.76 3.58 -25.96 -0.09 0.66 16 7 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.15 -0.97 6.63 -25.17 -0.17 -1.14 16 9 C -0.15 -0.90 7.09 -25.16 -0.18 -1.08 16 10 C 0.04 0.31 7.62 37.94 0.29 0.60 16 11 O -0.36 -4.17 11.37 -35.27 -0.40 -4.57 16 12 C 0.52 8.24 7.13 -10.99 -0.08 8.16 16 13 O -0.53 -10.46 15.96 -14.31 -0.23 -10.69 16 14 N -0.61 -9.22 3.00 -172.16 -0.52 -9.73 16 15 C 0.10 1.41 5.10 -3.36 -0.02 1.40 16 16 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 17 N -0.54 -10.89 4.62 -235.44 -1.09 -11.97 16 18 C 0.19 4.83 4.72 -4.98 -0.02 4.81 16 19 C -0.51 -13.64 8.41 -34.44 -0.29 -13.93 16 20 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 21 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 22 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 23 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.04 0.73 5.62 -3.68 -0.02 0.71 16 28 C 0.12 1.89 6.60 -3.58 -0.02 1.86 16 29 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 30 H 0.08 0.75 5.43 -51.93 -0.28 0.47 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 33 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 34 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 41 H 0.08 0.87 4.83 -51.93 -0.25 0.62 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 1.80 6.67 -51.93 -0.35 1.46 16 44 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 45 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 49 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 50 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -33.60 390.63 -10.08 -43.68 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.67 Total: -2.28 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.24 Total: 4.55 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.87 Total: -46.97 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.17 Total: -20.72 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.60 -10.08 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.763 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds