Wall clock time and date at job start Fri Apr 10 2020 18:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47153 * 2 1 4 4 C 1.42895 * 114.00108 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.86607 * 339.66529 * 4 3 2 6 6 C 1.53865 * 113.63756 * 110.92945 * 4 3 2 7 7 C 1.54147 * 87.06108 * 89.45052 * 6 4 3 8 8 H 1.08994 * 113.63448 * 139.62609 * 7 6 4 9 9 O 1.42893 * 113.71341 * 270.58790 * 7 6 4 10 10 C 1.53341 * 86.94444 * 25.11038 * 7 6 4 11 11 C 1.52791 * 113.61423 * 89.53799 * 10 7 6 12 12 C 1.53203 * 109.01347 * 184.87115 * 11 10 7 13 13 N 1.46831 * 109.44434 * 303.09222 * 12 11 10 14 14 C 1.46904 * 110.99964 * 187.76783 * 13 12 11 15 15 C 1.50702 * 109.46662 * 300.35408 * 14 13 12 16 16 O 1.21281 * 120.00307 * 354.29734 * 15 14 13 17 17 N 1.34776 * 119.99720 * 174.30187 * 15 14 13 18 18 C 1.46497 * 120.00029 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47679 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99394 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00495 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99974 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99972 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47378 * 89.99449 * 23 21 19 25 25 H 1.48499 * 109.47111 * 210.00056 * 23 21 19 26 26 H 1.48508 * 109.46999 * 329.99601 * 23 21 19 27 27 C 1.46831 * 111.43842 * 63.49578 * 13 12 11 28 28 C 1.52790 * 113.61223 * 220.08191 * 10 7 6 29 29 H 1.09004 * 109.47416 * 300.00238 * 1 2 3 30 30 H 1.08998 * 109.47170 * 60.00041 * 1 2 3 31 31 H 1.08995 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47129 * 240.00221 * 2 1 3 33 33 H 1.08997 * 109.47639 * 119.99713 * 2 1 3 34 34 H 1.08994 * 113.60426 * 203.97514 * 6 4 3 35 35 H 1.09007 * 113.60267 * 334.83642 * 6 4 3 36 36 H 0.96706 * 114.00191 * 277.39702 * 9 7 6 37 37 H 1.09003 * 109.55145 * 304.73236 * 11 10 7 38 38 H 1.09003 * 109.54904 * 65.00819 * 11 10 7 39 39 H 1.08997 * 109.48047 * 183.09564 * 12 11 10 40 40 H 1.09002 * 109.47329 * 63.07908 * 12 11 10 41 41 H 1.08997 * 109.47303 * 60.35015 * 14 13 12 42 42 H 1.08996 * 109.47371 * 180.35283 * 14 13 12 43 43 H 0.97002 * 120.00124 * 0.02562 * 17 15 14 44 44 H 1.08997 * 109.47440 * 300.00267 * 18 17 15 45 45 H 1.08999 * 109.47309 * 59.99787 * 18 17 15 46 46 H 0.96997 * 119.99795 * 179.97438 * 22 21 19 47 47 H 1.08991 * 109.47741 * 176.50313 * 27 13 12 48 48 H 1.08996 * 109.47794 * 56.48859 * 27 13 12 49 49 H 1.08999 * 109.54854 * 294.98877 * 28 10 7 50 50 H 1.08994 * 109.54882 * 55.27386 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9276 0.5548 0.3481 6 6 4.0055 2.0111 -1.3173 7 6 3.8490 3.4170 -0.7050 8 1 4.6828 4.0841 -0.9236 9 8 2.5770 4.0163 -0.9594 10 6 3.9464 2.7405 0.6676 11 6 5.3767 2.6232 1.1921 12 6 5.3644 1.8288 2.5020 13 7 4.4721 2.4871 3.4645 14 6 4.5743 1.8620 4.7899 15 6 4.1982 0.4062 4.6889 16 8 3.7779 -0.0405 3.6426 17 7 4.3289 -0.3995 5.7614 18 6 3.9628 -1.8146 5.6635 19 6 4.2018 -2.4885 6.9901 20 1 4.5875 -1.9193 7.8230 21 6 3.9272 -3.8312 7.1408 22 7 4.1364 -4.4192 8.2984 23 14 3.2595 -4.8153 5.7003 24 1 4.3897 -5.3875 4.9254 25 1 2.4004 -5.9150 6.2080 26 1 2.4575 -3.9257 4.8224 27 6 3.0822 2.4925 2.9910 28 6 2.9848 3.3189 1.7046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0423 1.7251 -1.4944 35 1 3.3638 1.8356 -2.1808 36 1 2.5097 4.4445 -1.8239 37 1 5.9933 2.1054 0.4573 38 1 5.7816 3.6189 1.3731 39 1 6.3737 1.7875 2.9115 40 1 5.0084 0.8167 2.3099 41 1 5.5979 1.9483 5.1544 42 1 3.8986 2.3647 5.4819 43 1 4.6646 -0.0422 6.5984 44 1 2.9093 -1.8998 5.3969 45 1 4.5713 -2.2952 4.8974 46 1 3.9428 -5.3638 8.4045 47 1 2.4399 2.9314 3.7544 48 1 2.7625 1.4699 2.7910 49 1 3.2543 4.3539 1.9146 50 1 1.9657 3.2767 1.3204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741258012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:08 Heat of formation + Delta-G solvation = -100.477360 kcal Electronic energy + Delta-G solvation = -30029.764612 eV Core-core repulsion = 26057.982947 eV Total energy + Delta-G solvation = -3971.781665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99860 -39.43013 -37.11029 -36.68319 -34.64944 -34.16963 -32.43056 -31.37132 -31.00338 -30.33471 -28.42135 -26.24164 -24.52356 -23.67054 -22.98867 -22.58108 -21.89331 -20.63221 -19.93091 -18.53226 -17.33617 -17.23458 -16.48761 -16.32354 -15.92654 -15.61317 -15.24386 -15.10153 -14.73493 -14.62852 -14.32595 -14.20956 -13.97720 -13.43687 -13.26614 -13.17452 -12.66457 -12.59557 -12.39997 -12.39174 -12.07889 -11.98259 -11.86865 -11.73666 -11.49324 -11.35203 -11.10192 -11.04132 -10.90438 -10.67656 -10.55935 -10.26759 -10.04588 -9.96141 -9.83334 -9.63922 -9.52820 -9.25945 -8.81691 -8.18059 -7.83248 -6.25465 -4.27795 3.13713 3.22195 3.28902 3.36315 3.53014 3.88545 4.02120 4.07838 4.28944 4.42404 4.60478 4.70495 4.87811 4.99329 5.09111 5.10295 5.14344 5.23788 5.30597 5.38181 5.43797 5.44393 5.50815 5.53702 5.57347 5.61649 5.66538 5.70175 5.77513 5.84392 5.86820 5.97806 6.03911 6.11253 6.17468 6.23230 6.30516 6.46869 6.61071 6.74514 7.01926 7.10263 7.20172 7.23573 7.35661 7.35928 7.58475 8.08761 8.47261 8.70847 8.88023 9.34656 10.86581 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.003484 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.810269 B = 8033.996439 C = 9161.059391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.348 6.348 4 C 0.084 3.916 5 H 0.072 0.928 6 C -0.197 4.197 7 C 0.095 3.905 8 H 0.063 0.937 9 O -0.534 6.534 10 C -0.066 4.066 11 C -0.087 4.087 12 C 0.040 3.960 13 N -0.514 5.514 14 C 0.032 3.968 15 C 0.468 3.532 16 O -0.557 6.557 17 N -0.704 5.704 18 C 0.221 3.779 19 C -0.544 4.544 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.892 5.892 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.262 1.262 27 C 0.040 3.960 28 C -0.080 4.080 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.372 0.628 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.397 0.603 44 H 0.023 0.977 45 H 0.018 0.982 46 H 0.268 0.732 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 16.292 -18.192 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.025 3.975 5 H 0.090 0.910 6 C -0.235 4.235 7 C 0.035 3.965 8 H 0.080 0.920 9 O -0.338 6.338 10 C -0.067 4.067 11 C -0.125 4.125 12 C -0.088 4.088 13 N -0.237 5.237 14 C -0.099 4.099 15 C 0.252 3.748 16 O -0.437 6.437 17 N -0.352 5.352 18 C 0.098 3.902 19 C -0.582 4.582 20 H 0.097 0.903 21 C -0.126 4.126 22 N -0.529 5.529 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.087 4.087 28 C -0.118 4.118 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.218 0.782 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.230 0.770 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.330 16.186 -18.178 24.342 hybrid contribution -0.032 -1.493 -0.787 1.688 sum -0.363 14.693 -18.964 23.993 Atomic orbital electron populations 1.21692 0.93912 1.01991 1.02806 1.22526 0.95406 0.84207 1.00124 1.87924 1.18879 1.25499 1.94295 1.22832 0.82366 0.97537 0.94755 0.91006 1.24259 1.01536 0.98675 0.98998 1.22671 0.85613 0.91948 0.96276 0.91965 1.86570 1.32864 1.74907 1.39431 1.21911 0.96307 0.94775 0.93682 1.21315 0.93401 1.01359 0.96403 1.22279 0.96582 0.98101 0.91814 1.62319 1.08425 1.51515 1.01458 1.22292 1.03799 0.90286 0.93562 1.21932 0.78872 0.89569 0.84409 1.90547 1.47312 1.76975 1.28896 1.46356 1.64065 1.11745 1.13047 1.19451 0.95561 0.77257 0.97907 1.21102 1.45862 0.95208 0.96016 0.90251 1.24802 0.94513 0.97412 0.95896 1.69880 1.47657 1.11764 1.23601 0.86815 0.79782 0.80187 0.82861 1.19907 1.20847 1.18650 1.22341 0.88371 1.01490 0.96511 1.21138 0.99741 0.98205 0.92720 0.91820 0.92242 0.91364 0.94109 0.92724 0.88993 0.90570 0.78191 0.91496 0.90642 0.91271 0.91282 0.88246 0.88071 0.76983 0.95897 0.96402 0.92237 0.91843 0.91054 0.92210 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.05 0.72 6.50 37.16 0.24 0.96 16 3 O -0.35 -4.96 8.51 -38.16 -0.32 -5.28 16 4 C 0.08 1.08 3.53 -26.10 -0.09 0.99 16 5 H 0.07 1.02 7.29 -51.93 -0.38 0.64 16 6 C -0.20 -1.99 7.42 -25.68 -0.19 -2.18 16 7 C 0.09 0.96 4.72 -25.96 -0.12 0.84 16 8 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 9 O -0.53 -5.70 12.10 -38.16 -0.46 -6.16 16 10 C -0.07 -0.79 0.73 -154.37 -0.11 -0.91 16 11 C -0.09 -0.96 5.19 -26.73 -0.14 -1.10 16 12 C 0.04 0.53 4.90 -3.76 -0.02 0.52 16 13 N -0.51 -7.05 4.81 -235.93 -1.13 -8.19 16 14 C 0.03 0.44 5.83 -4.97 -0.03 0.41 16 15 C 0.47 8.42 7.23 -10.98 -0.08 8.34 16 16 O -0.56 -11.59 11.69 5.56 0.06 -11.52 16 17 N -0.70 -13.80 5.55 -61.47 -0.34 -14.14 16 18 C 0.22 5.35 4.50 -5.20 -0.02 5.32 16 19 C -0.54 -14.81 9.83 -34.44 -0.34 -15.15 16 20 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 21 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 23 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 27 C 0.04 0.59 4.99 -3.75 -0.02 0.57 16 28 C -0.08 -1.08 4.62 -26.73 -0.12 -1.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.78 7.64 -51.93 -0.40 0.39 16 35 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.37 2.30 9.12 45.56 0.42 2.71 16 37 H 0.07 0.64 7.34 -51.93 -0.38 0.26 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.07 1.13 5.19 -51.93 -0.27 0.86 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.10 1.22 8.06 -51.93 -0.42 0.80 16 43 H 0.40 6.86 8.32 -40.82 -0.34 6.52 16 44 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 45 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 48 H 0.07 1.27 5.69 -51.93 -0.30 0.98 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.08 1.25 6.65 -51.93 -0.35 0.91 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -32.48 384.32 -8.88 -41.36 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.82 Total: 8.88 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.76 Total: -1.80 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.70 Total: -47.94 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.72 Total: -22.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.48 -8.88 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741258012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.120 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds