Wall clock time and date at job start Fri Apr 10 2020 18:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45205 * 109.46869 * 2 1 4 4 C 1.34224 * 116.99785 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.52997 * 110.27605 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47127 * 302.08682 * 7 6 4 9 9 C 1.52999 * 109.46991 * 182.09367 * 7 6 4 10 10 C 1.54597 * 110.39044 * 57.85349 * 6 4 3 11 11 C 1.54933 * 102.92385 * 219.08736 * 10 6 4 12 12 N 1.48527 * 103.22611 * 37.41289 * 11 10 6 13 13 C 1.46901 * 110.99967 * 200.28020 * 12 11 10 14 14 C 1.50693 * 109.47334 * 307.39630 * 13 12 11 15 15 O 1.21282 * 120.00047 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00126 * 179.97438 * 14 13 12 17 17 C 1.46511 * 119.99959 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46720 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00505 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99449 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99707 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47185 * 119.99733 * 22 20 18 25 25 H 1.48496 * 109.47295 * 239.99488 * 22 20 18 26 26 C 1.47904 * 105.82355 * 320.79700 * 12 11 10 27 27 H 1.08997 * 109.46795 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46995 * 300.00199 * 1 2 3 29 29 H 1.09004 * 109.46723 * 60.00093 * 1 2 3 30 30 H 1.08995 * 109.47363 * 240.00094 * 2 1 3 31 31 H 1.08994 * 109.46740 * 119.99877 * 2 1 3 32 32 H 1.08993 * 109.47194 * 62.08524 * 7 6 4 33 33 H 1.09001 * 109.46801 * 300.00272 * 8 7 6 34 34 H 1.09001 * 109.46998 * 59.99868 * 8 7 6 35 35 H 1.09000 * 109.47050 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.46719 * 299.99711 * 9 7 6 37 37 H 1.08993 * 109.47839 * 59.99553 * 9 7 6 38 38 H 1.09000 * 109.47160 * 179.97438 * 9 7 6 39 39 H 1.09001 * 110.72702 * 337.44826 * 10 6 4 40 40 H 1.09001 * 110.72035 * 100.72819 * 10 6 4 41 41 H 1.09005 * 110.66323 * 278.98229 * 11 10 6 42 42 H 1.09001 * 110.81181 * 155.92176 * 11 10 6 43 43 H 1.08997 * 109.47374 * 67.40281 * 13 12 11 44 44 H 1.09007 * 109.46984 * 187.39738 * 13 12 11 45 45 H 0.96997 * 120.00248 * 0.02562 * 16 14 13 46 46 H 1.08996 * 109.46691 * 299.99878 * 17 16 14 47 47 H 1.08999 * 109.46638 * 60.00140 * 17 16 14 48 48 H 0.97005 * 120.00068 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.91032 * 265.97521 * 26 12 11 50 50 H 1.08995 * 110.08198 * 144.77718 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9375 0.0012 7 6 5.4496 2.8788 0.0010 8 6 5.9299 2.0929 1.2229 9 6 6.0145 4.2997 0.0544 10 6 3.4137 3.7296 1.2281 11 6 3.1762 5.1477 0.6511 12 7 2.6435 4.8765 -0.7085 13 6 2.8029 6.0484 -1.5798 14 6 2.2110 7.2595 -0.9062 15 8 1.7064 7.1567 0.1919 16 7 2.2432 8.4571 -1.5235 17 6 1.6682 9.6347 -0.8682 18 6 1.8317 10.8368 -1.7622 19 1 2.3158 10.7342 -2.7221 20 6 1.3641 12.0680 -1.3541 21 7 0.7750 12.1932 -0.1849 22 14 1.5660 13.5580 -2.4624 23 1 2.2557 13.1542 -3.7140 24 1 0.2293 14.1154 -2.7910 25 1 2.3740 14.5892 -1.7632 26 6 3.4165 3.7249 -1.2223 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7942 2.3846 -0.9072 33 1 5.5853 2.5872 2.1312 34 1 5.5275 1.0807 1.1850 35 1 7.0191 2.0515 1.2230 36 1 5.6723 4.8596 -0.8160 37 1 5.6699 4.7939 0.9627 38 1 7.1037 4.2579 0.0548 39 1 2.4826 3.3050 1.6036 40 1 4.1713 3.7538 2.0115 41 1 4.1133 5.7015 0.5937 42 1 2.4453 5.6918 1.2493 43 1 3.8626 6.2193 -1.7688 44 1 2.2894 5.8711 -2.5249 45 1 2.6470 8.5395 -2.4015 46 1 0.6084 9.4641 -0.6795 47 1 2.1818 9.8116 0.0768 48 1 0.4458 13.0593 0.1021 49 1 4.2629 4.0789 -1.8108 50 1 2.7779 3.0893 -1.8357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773921615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:45 Heat of formation + Delta-G solvation = -119.129331 kcal Electronic energy + Delta-G solvation = -29139.637087 eV Core-core repulsion = 25167.046612 eV Total energy + Delta-G solvation = -3972.590475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42585 -39.61938 -38.39637 -36.88309 -34.97058 -34.11106 -32.38778 -32.12777 -31.06103 -29.34748 -28.09198 -27.42439 -25.95679 -23.90785 -22.87529 -22.53309 -21.82843 -21.15998 -19.74629 -19.16835 -17.69291 -17.23849 -16.94254 -16.65804 -16.06694 -15.77278 -15.26475 -15.01613 -14.67533 -14.48930 -14.34631 -14.13471 -13.80715 -13.47758 -13.19009 -13.04654 -12.70502 -12.52180 -12.38390 -12.32555 -12.23998 -12.12305 -11.97405 -11.95421 -11.79237 -11.65514 -11.57264 -11.30942 -11.10498 -10.97152 -10.90318 -10.78120 -10.68832 -10.49256 -10.29186 -10.09494 -9.39311 -8.93810 -8.75316 -8.29389 -7.87843 -6.18321 -4.25135 1.99109 2.43901 3.22206 3.29437 3.32240 3.34488 3.72053 4.13216 4.24032 4.29973 4.41563 4.46618 4.66539 4.67600 4.73866 4.93226 4.96866 4.99477 5.17920 5.19047 5.23173 5.26679 5.32931 5.43208 5.45337 5.48282 5.53672 5.55488 5.59513 5.65956 5.67738 5.70937 5.74486 5.82617 5.88412 6.02308 6.10251 6.20104 6.36752 6.41247 6.90103 6.94143 7.30533 7.44065 7.50604 7.60772 7.65762 7.95562 8.60970 8.77103 9.09590 9.41708 10.91873 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002496 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.016760 B =11215.732433 C =12010.264713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.344 6.344 4 C 0.480 3.520 5 O -0.508 6.508 6 C -0.058 4.058 7 C -0.070 4.070 8 C -0.163 4.163 9 C -0.154 4.154 10 C -0.113 4.113 11 C 0.032 3.968 12 N -0.489 5.489 13 C 0.024 3.976 14 C 0.499 3.501 15 O -0.541 6.541 16 N -0.713 5.713 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.049 3.951 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.121 0.879 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.390 0.610 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.265 0.735 49 H 0.059 0.941 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -23.026 -0.867 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.260 6.260 4 C 0.323 3.677 5 O -0.396 6.396 6 C -0.060 4.060 7 C -0.088 4.088 8 C -0.220 4.220 9 C -0.211 4.211 10 C -0.151 4.151 11 C -0.095 4.095 12 N -0.214 5.214 13 C -0.107 4.107 14 C 0.283 3.717 15 O -0.419 6.419 16 N -0.362 5.362 17 C 0.131 3.869 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.079 4.079 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.222 0.778 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.419 -23.348 0.057 24.214 hybrid contribution 1.146 0.935 -1.184 1.894 sum 7.566 -22.413 -1.126 23.682 Atomic orbital electron populations 1.21802 0.92456 1.02762 1.03981 1.23030 0.95617 0.80353 1.02268 1.86602 1.24100 1.31884 1.83402 1.23443 0.80633 0.91937 0.71693 1.90573 1.60202 1.43228 1.45609 1.21514 0.96051 0.89115 0.99315 1.20973 0.90391 0.97073 1.00396 1.22169 1.01150 1.01954 0.96736 1.22089 1.00936 0.95435 1.02620 1.22766 1.01785 0.95442 0.95126 1.23693 1.00080 0.95213 0.90501 1.64708 1.51231 1.03156 1.02272 1.22297 1.00125 0.90450 0.97869 1.20223 0.80705 0.84327 0.86448 1.90588 1.45800 1.85095 1.20415 1.46444 1.59287 1.09025 1.21409 1.19096 0.94175 0.80320 0.93358 1.21263 1.40059 0.92970 1.03823 0.91881 1.24952 0.94726 0.99064 0.95291 1.69983 1.38059 1.24857 1.19346 0.86371 0.77950 0.82244 0.80403 1.19649 1.20776 1.20815 1.22972 0.96747 0.93320 0.94841 0.90410 0.91264 0.91246 0.91424 0.91436 0.90436 0.92741 0.90116 0.92596 0.92516 0.91511 0.92037 0.89700 0.89906 0.93388 0.86124 0.92259 0.88104 0.77779 0.95485 0.95588 0.92495 0.92273 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.34 -4.01 9.65 -39.24 -0.38 -4.39 16 4 C 0.48 5.70 6.10 36.01 0.22 5.92 16 5 O -0.51 -6.67 13.39 -18.75 -0.25 -6.92 16 6 C -0.06 -0.63 0.54 -154.31 -0.08 -0.72 16 7 C -0.07 -0.67 1.85 -90.62 -0.17 -0.84 16 8 C -0.16 -1.56 8.67 37.16 0.32 -1.24 16 9 C -0.15 -1.40 7.56 37.16 0.28 -1.12 16 10 C -0.11 -1.30 5.38 -24.87 -0.13 -1.43 16 11 C 0.03 0.44 4.79 -1.90 -0.01 0.43 16 12 N -0.49 -6.75 5.26 -231.90 -1.22 -7.97 16 13 C 0.02 0.33 5.52 -4.98 -0.03 0.30 16 14 C 0.50 9.48 7.54 -10.99 -0.08 9.39 16 15 O -0.54 -12.22 13.52 5.56 0.08 -12.15 16 16 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 17 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 18 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 22 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.05 0.55 5.49 -2.76 -0.02 0.54 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.49 6.38 -51.93 -0.33 0.16 16 34 H 0.08 0.90 5.41 -51.93 -0.28 0.62 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.53 6.39 -51.93 -0.33 0.19 16 37 H 0.07 0.64 5.52 -51.93 -0.29 0.35 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.03 7.57 -51.93 -0.39 0.64 16 40 H 0.08 0.83 5.51 -51.93 -0.29 0.55 16 41 H 0.05 0.64 5.72 -51.93 -0.30 0.35 16 42 H 0.12 2.07 5.96 -51.93 -0.31 1.76 16 43 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 44 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.06 0.58 5.74 -51.93 -0.30 0.28 16 50 H 0.08 0.93 7.59 -51.93 -0.39 0.53 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -32.01 384.97 -8.27 -40.28 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.14 Total: 4.98 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 0.47 Total: 4.63 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.82 Total: -47.83 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.55 Total: -23.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.01 -8.27 -40.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773921615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.850 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds