Wall clock time and date at job start Fri Apr 10 2020 18:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45205 * 109.46869 * 2 1 4 4 C 1.34224 * 116.99785 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.52997 * 110.27605 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47127 * 302.08682 * 7 6 4 9 9 C 1.52999 * 109.46991 * 182.09367 * 7 6 4 10 10 C 1.54597 * 110.39044 * 57.85349 * 6 4 3 11 11 C 1.54933 * 102.92385 * 219.08736 * 10 6 4 12 12 N 1.48527 * 103.22611 * 37.41289 * 11 10 6 13 13 C 1.46901 * 110.99967 * 200.28020 * 12 11 10 14 14 C 1.50693 * 109.47334 * 307.39630 * 13 12 11 15 15 O 1.21282 * 120.00047 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00126 * 179.97438 * 14 13 12 17 17 C 1.46511 * 119.99959 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46720 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00505 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99449 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99707 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47185 * 119.99733 * 22 20 18 25 25 H 1.48496 * 109.47295 * 239.99488 * 22 20 18 26 26 C 1.47904 * 105.82355 * 320.79700 * 12 11 10 27 27 H 1.08997 * 109.46795 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46995 * 300.00199 * 1 2 3 29 29 H 1.09004 * 109.46723 * 60.00093 * 1 2 3 30 30 H 1.08995 * 109.47363 * 240.00094 * 2 1 3 31 31 H 1.08994 * 109.46740 * 119.99877 * 2 1 3 32 32 H 1.08993 * 109.47194 * 62.08524 * 7 6 4 33 33 H 1.09001 * 109.46801 * 300.00272 * 8 7 6 34 34 H 1.09001 * 109.46998 * 59.99868 * 8 7 6 35 35 H 1.09000 * 109.47050 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.46719 * 299.99711 * 9 7 6 37 37 H 1.08993 * 109.47839 * 59.99553 * 9 7 6 38 38 H 1.09000 * 109.47160 * 179.97438 * 9 7 6 39 39 H 1.09001 * 110.72702 * 337.44826 * 10 6 4 40 40 H 1.09001 * 110.72035 * 100.72819 * 10 6 4 41 41 H 1.09005 * 110.66323 * 278.98229 * 11 10 6 42 42 H 1.09001 * 110.81181 * 155.92176 * 11 10 6 43 43 H 1.08997 * 109.47374 * 67.40281 * 13 12 11 44 44 H 1.09007 * 109.46984 * 187.39738 * 13 12 11 45 45 H 0.96997 * 120.00248 * 0.02562 * 16 14 13 46 46 H 1.08996 * 109.46691 * 299.99878 * 17 16 14 47 47 H 1.08999 * 109.46638 * 60.00140 * 17 16 14 48 48 H 0.97005 * 120.00068 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.91032 * 265.97521 * 26 12 11 50 50 H 1.08995 * 110.08198 * 144.77718 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9375 0.0012 7 6 5.4496 2.8788 0.0010 8 6 5.9299 2.0929 1.2229 9 6 6.0145 4.2997 0.0544 10 6 3.4137 3.7296 1.2281 11 6 3.1762 5.1477 0.6511 12 7 2.6435 4.8765 -0.7085 13 6 2.8029 6.0484 -1.5798 14 6 2.2110 7.2595 -0.9062 15 8 1.7064 7.1567 0.1919 16 7 2.2432 8.4571 -1.5235 17 6 1.6682 9.6347 -0.8682 18 6 1.8317 10.8368 -1.7622 19 1 2.3158 10.7342 -2.7221 20 6 1.3641 12.0680 -1.3541 21 7 0.7750 12.1932 -0.1849 22 14 1.5660 13.5580 -2.4624 23 1 2.2557 13.1542 -3.7140 24 1 0.2293 14.1154 -2.7910 25 1 2.3740 14.5892 -1.7632 26 6 3.4165 3.7249 -1.2223 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7942 2.3846 -0.9072 33 1 5.5853 2.5872 2.1312 34 1 5.5275 1.0807 1.1850 35 1 7.0191 2.0515 1.2230 36 1 5.6723 4.8596 -0.8160 37 1 5.6699 4.7939 0.9627 38 1 7.1037 4.2579 0.0548 39 1 2.4826 3.3050 1.6036 40 1 4.1713 3.7538 2.0115 41 1 4.1133 5.7015 0.5937 42 1 2.4453 5.6918 1.2493 43 1 3.8626 6.2193 -1.7688 44 1 2.2894 5.8711 -2.5249 45 1 2.6470 8.5395 -2.4015 46 1 0.6084 9.4641 -0.6795 47 1 2.1818 9.8116 0.0768 48 1 0.4458 13.0593 0.1021 49 1 4.2629 4.0789 -1.8108 50 1 2.7779 3.0893 -1.8357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773921615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:44 Heat of formation + Delta-G solvation = -141.434705 kcal Electronic energy + Delta-G solvation = -29140.604320 eV Core-core repulsion = 25167.046612 eV Total energy + Delta-G solvation = -3973.557709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.34670 -40.84286 -39.66526 -37.82086 -36.24379 -35.68553 -34.33550 -32.89160 -32.02652 -30.29245 -29.72519 -28.34511 -27.31892 -24.84988 -24.35097 -23.65312 -22.70162 -22.26172 -21.33918 -20.03252 -18.98271 -18.45297 -18.04073 -17.51672 -17.39862 -17.29518 -16.70204 -16.47175 -15.89562 -15.65742 -15.53856 -15.15310 -14.81105 -14.64936 -14.32585 -14.19782 -13.86396 -13.80309 -13.63728 -13.32065 -13.29333 -13.08212 -13.03468 -12.89179 -12.83075 -12.77181 -12.66886 -12.48476 -12.46601 -12.38919 -12.20539 -11.99576 -11.59593 -11.48969 -11.43945 -11.35670 -10.98267 -10.79606 -10.49140 -9.78041 -9.32237 -8.27739 -6.43713 1.07279 1.44352 1.45021 1.58409 1.63423 1.82012 2.29677 2.49518 3.05452 3.07507 3.37339 3.43957 3.52270 3.84141 3.96228 4.00726 4.07497 4.10851 4.18343 4.30192 4.32169 4.33319 4.39330 4.47981 4.50997 4.64649 4.74826 4.79571 4.81189 4.84638 4.90508 4.91853 5.01384 5.06488 5.14432 5.15775 5.18737 5.20408 5.28267 5.35102 5.43201 5.52941 5.60576 5.73833 5.85200 5.87571 5.94859 6.68195 6.71894 6.97273 7.26005 7.56394 8.84554 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002496 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.016760 B =11215.732433 C =12010.264713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.480 3.520 5 O -0.522 6.522 6 C -0.054 4.054 7 C -0.065 4.065 8 C -0.161 4.161 9 C -0.152 4.152 10 C -0.105 4.105 11 C 0.036 3.964 12 N -0.509 5.509 13 C 0.037 3.963 14 C 0.494 3.506 15 O -0.582 6.582 16 N -0.708 5.708 17 C 0.269 3.731 18 C -0.553 4.553 19 H 0.084 0.916 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.983 3.017 23 H -0.252 1.252 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.053 3.947 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.408 0.592 46 H -0.015 1.015 47 H -0.012 1.012 48 H 0.268 0.732 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.905 -23.652 -3.212 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.274 6.274 4 C 0.324 3.676 5 O -0.411 6.411 6 C -0.056 4.056 7 C -0.084 4.084 8 C -0.218 4.218 9 C -0.208 4.208 10 C -0.143 4.143 11 C -0.091 4.091 12 N -0.234 5.234 13 C -0.093 4.093 14 C 0.281 3.719 15 O -0.462 6.462 16 N -0.359 5.359 17 C 0.146 3.854 18 C -0.591 4.591 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.806 3.194 23 H -0.176 1.176 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.074 4.074 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.145 0.855 45 H 0.243 0.757 46 H 0.003 0.997 47 H 0.006 0.994 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.077 -24.015 -2.326 25.443 hybrid contribution 0.589 1.028 -0.380 1.244 sum 8.666 -22.986 -2.705 24.714 Atomic orbital electron populations 1.21820 0.91098 1.04188 1.03415 1.23266 0.96709 0.79268 1.02631 1.86602 1.24058 1.33503 1.83199 1.23594 0.80643 0.92107 0.71282 1.90570 1.60481 1.43743 1.46326 1.21528 0.96930 0.88441 0.98686 1.20970 0.89260 0.97582 1.00586 1.22126 1.01868 1.00938 0.96825 1.22069 1.01773 0.94713 1.02291 1.22661 1.01772 0.94044 0.95818 1.23476 0.98966 0.96120 0.90502 1.64651 1.52626 1.03833 1.02276 1.22248 1.01702 0.87627 0.97762 1.21227 0.79585 0.85173 0.85899 1.90601 1.47336 1.85796 1.22484 1.46165 1.59505 1.08130 1.22109 1.18494 0.91530 0.82800 0.92549 1.21659 1.39837 0.93131 1.04480 0.89811 1.26046 0.94095 1.02754 0.96744 1.70143 1.39321 1.25877 1.21651 0.85141 0.77958 0.77593 0.78708 1.17584 1.20601 1.20536 1.22980 0.97267 0.92188 0.94971 0.87997 0.91906 0.91658 0.90916 0.91209 0.90033 0.92577 0.91727 0.91393 0.92339 0.92260 0.90721 0.90847 0.88561 0.92832 0.90096 0.89034 0.85518 0.75651 0.99672 0.99423 0.92322 0.90011 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 0.94 6.19 71.98 0.45 1.38 16 3 O -0.36 -8.14 9.65 -51.36 -0.50 -8.64 16 4 C 0.48 10.92 6.10 71.24 0.43 11.36 16 5 O -0.52 -13.18 13.39 21.96 0.29 -12.89 16 6 C -0.05 -1.10 0.54 -52.05 -0.03 -1.12 16 7 C -0.07 -1.12 1.85 -10.79 -0.02 -1.14 16 8 C -0.16 -2.81 8.67 71.98 0.62 -2.18 16 9 C -0.15 -2.36 7.56 71.98 0.54 -1.81 16 10 C -0.11 -2.36 5.38 31.80 0.17 -2.19 16 11 C 0.04 1.01 4.79 86.65 0.42 1.43 16 12 N -0.51 -13.39 5.26 -887.60 -4.67 -18.06 16 13 C 0.04 0.95 5.52 85.55 0.47 1.42 16 14 C 0.49 18.79 7.54 87.66 0.66 19.45 16 15 O -0.58 -27.44 13.52 -3.04 -0.04 -27.48 16 16 N -0.71 -28.69 5.55 -466.77 -2.59 -31.28 16 17 C 0.27 14.49 5.43 85.63 0.46 14.96 16 18 C -0.55 -29.58 9.28 25.60 0.24 -29.34 16 19 H 0.08 4.04 7.60 -2.91 -0.02 4.01 16 20 C 0.00 0.17 5.46 84.66 0.46 0.63 16 21 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 22 Si 0.98 41.87 29.54 68.60 2.03 43.90 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.05 1.07 5.49 86.44 0.47 1.54 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.16 8.13 -2.39 -0.02 1.15 16 31 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 0.94 6.38 -2.39 -0.02 0.93 16 34 H 0.06 1.37 5.41 -2.39 -0.01 1.36 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 0.89 6.39 -2.39 -0.02 0.87 16 37 H 0.06 1.02 5.52 -2.39 -0.01 1.01 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.82 7.57 -2.39 -0.02 1.80 16 40 H 0.10 1.88 5.51 -2.39 -0.01 1.86 16 41 H 0.05 1.40 5.72 -2.38 -0.01 1.39 16 42 H 0.08 2.93 5.96 -2.39 -0.01 2.92 16 43 H 0.09 1.79 7.81 -2.39 -0.02 1.77 16 44 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 45 H 0.41 13.41 8.32 -92.71 -0.77 12.63 16 46 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 49 H 0.08 1.29 5.74 -2.39 -0.01 1.27 16 50 H 0.09 1.70 7.59 -2.39 -0.02 1.68 16 Total: -1.00 -72.37 384.97 1.09 -71.29 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.18 Total: 25.55 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.10 Total: 13.15 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -6.97 Total: -104.87 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.24 Total: -49.01 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -72.37 1.09 -71.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773921615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.146 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds