Wall clock time and date at job start Fri Apr 10 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.47022 * 2 1 4 4 C 1.46493 * 119.99597 * 269.99539 * 3 2 1 5 5 C 1.50696 * 109.47344 * 269.99894 * 4 3 2 6 6 H 1.07999 * 119.99782 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99940 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47040 * 59.99997 * 9 7 5 11 11 H 1.48495 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47101 * 299.99953 * 9 7 5 13 13 C 1.34767 * 119.99960 * 89.99714 * 3 2 1 14 14 O 1.21283 * 120.00031 * 180.02562 * 13 3 2 15 15 C 1.50704 * 120.00323 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47315 * 179.97438 * 15 13 3 17 17 C 1.46847 * 111.00111 * 169.99928 * 16 15 13 18 18 C 1.53043 * 109.50674 * 185.86808 * 17 16 15 19 19 C 1.53083 * 109.25791 * 300.86471 * 18 17 16 20 20 C 1.53055 * 109.24451 * 57.64601 * 19 18 17 21 21 C 1.46842 * 110.99944 * 294.25697 * 16 15 13 22 22 O 1.42897 * 109.49367 * 177.61975 * 19 18 17 23 23 C 1.43112 * 113.75325 * 61.33375 * 22 19 18 24 24 C 1.53252 * 108.94491 * 57.87327 * 23 22 19 25 25 C 1.53259 * 108.98033 * 305.42541 * 24 23 22 26 26 O 1.42918 * 109.45484 * 297.76423 * 19 18 17 27 27 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47085 * 300.00377 * 1 2 3 29 29 H 1.09003 * 109.46905 * 60.00210 * 1 2 3 30 30 H 1.08991 * 109.47095 * 239.99987 * 2 1 3 31 31 H 1.09000 * 109.46826 * 119.99260 * 2 1 3 32 32 H 1.09004 * 109.47385 * 30.00471 * 4 3 2 33 33 H 1.09004 * 109.46714 * 150.00089 * 4 3 2 34 34 H 0.97002 * 119.99973 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47065 * 60.00235 * 15 13 3 36 36 H 1.08998 * 109.47214 * 299.99897 * 15 13 3 37 37 H 1.08999 * 109.46453 * 65.85750 * 17 16 15 38 38 H 1.08997 * 109.46353 * 305.87969 * 17 16 15 39 39 H 1.09001 * 109.50758 * 180.93015 * 18 17 16 40 40 H 1.09001 * 109.51115 * 60.79944 * 18 17 16 41 41 H 1.08997 * 109.51100 * 62.31560 * 20 19 18 42 42 H 1.09007 * 109.49962 * 182.44465 * 20 19 18 43 43 H 1.08996 * 109.46285 * 294.16644 * 21 16 15 44 44 H 1.09001 * 109.46242 * 54.13604 * 21 16 15 45 45 H 1.08999 * 109.55766 * 298.03232 * 23 22 19 46 46 H 1.09000 * 109.64735 * 177.76324 * 23 22 19 47 47 H 1.09002 * 109.57123 * 65.30827 * 24 23 22 48 48 H 1.08994 * 109.56917 * 185.54826 * 24 23 22 49 49 H 1.09002 * 109.56023 * 174.42435 * 25 24 23 50 50 H 1.08996 * 109.55972 * 294.76265 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1495 2.3904 -2.8774 8 7 3.3498 3.1272 -3.6171 9 14 5.9135 2.0963 -3.4169 10 1 6.1403 0.6396 -3.5952 11 1 6.1611 2.7963 -4.7029 12 1 6.8414 2.6187 -2.3818 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3100 2.2063 3.5889 17 6 1.8570 1.6409 4.8662 18 6 2.0725 2.6647 5.9832 19 6 3.5588 3.0234 6.0595 20 6 4.0175 3.5642 4.7031 21 6 3.7453 2.5146 3.6229 22 8 3.7578 4.0202 7.0638 23 6 3.3804 3.5978 8.3781 24 6 4.1797 2.3431 8.7462 25 6 3.9742 1.2840 7.6577 26 8 4.3142 1.8553 6.3874 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6761 3.5182 -4.4427 35 1 2.6211 0.4188 2.5303 36 1 0.9431 1.0127 2.5299 37 1 2.4266 0.7380 5.0862 38 1 0.7974 1.3945 4.7989 39 1 1.7516 2.2390 6.9340 40 1 1.4919 3.5625 5.7712 41 1 3.4686 4.4767 4.4705 42 1 5.0853 3.7802 4.7398 43 1 4.3063 1.6076 3.8481 44 1 4.0565 2.9026 2.6530 45 1 2.3146 3.3698 8.3960 46 1 3.5960 4.3909 9.0940 47 1 5.2384 2.5926 8.8176 48 1 3.8306 1.9555 9.7032 49 1 4.6152 0.4254 7.8583 50 1 2.9310 0.9684 7.6480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815156663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:55 Heat of formation + Delta-G solvation = -116.749898 kcal Electronic energy + Delta-G solvation = -29764.270251 eV Core-core repulsion = 25791.782956 eV Total energy + Delta-G solvation = -3972.487295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.90751 -39.25636 -37.35528 -35.80612 -35.16826 -33.43932 -32.74709 -31.27039 -30.79293 -30.04764 -27.92813 -26.26692 -25.98810 -23.93174 -23.21394 -22.96335 -22.17874 -21.06516 -19.48472 -18.25968 -17.52075 -16.88670 -16.53588 -16.35016 -16.10682 -15.61564 -15.30824 -15.11221 -14.84647 -14.63488 -14.25722 -14.16287 -13.75647 -13.52384 -13.32169 -13.21985 -13.03971 -12.60791 -12.38125 -12.24227 -12.05599 -11.92779 -11.75440 -11.68409 -11.35928 -11.21760 -11.16739 -11.13045 -10.92175 -10.87993 -10.77145 -10.58742 -10.47491 -10.23347 -10.07317 -9.60920 -9.54245 -8.82706 -8.39847 -8.07904 -7.59463 -6.00810 -4.05540 3.34055 3.38633 3.39248 3.40969 3.45880 3.51161 3.68680 4.24552 4.35821 4.41975 4.46904 4.48568 4.65842 4.79867 4.94673 5.02138 5.06810 5.10336 5.24879 5.29663 5.33381 5.36788 5.41490 5.44456 5.46501 5.50652 5.56815 5.65327 5.67495 5.71166 5.75838 5.82505 5.85855 5.95083 6.05347 6.25063 6.28975 6.35489 6.50455 6.69650 6.99841 7.08360 7.17946 7.23690 7.50586 7.61171 7.96124 8.27802 8.49519 8.94612 9.18835 9.59657 11.07118 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.003050 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.078031 B = 9177.362094 C =10069.056205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.520 5.520 17 C 0.064 3.936 18 C -0.164 4.164 19 C 0.273 3.727 20 C -0.085 4.085 21 C 0.056 3.944 22 O -0.383 6.383 23 C 0.054 3.946 24 C -0.191 4.191 25 C 0.053 3.947 26 O -0.381 6.381 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.109 0.891 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -6.638 23.410 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.245 5.245 17 C -0.064 4.064 18 C -0.202 4.202 19 C 0.196 3.804 20 C -0.123 4.123 21 C -0.071 4.071 22 O -0.304 6.304 23 C -0.022 4.022 24 C -0.229 4.229 25 C -0.024 4.024 26 O -0.301 6.301 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.127 0.873 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.114 0.886 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.229 -5.362 22.962 23.956 hybrid contribution 1.013 -1.239 0.171 1.610 sum -3.215 -6.601 23.133 24.271 Atomic orbital electron populations 1.22224 0.96851 1.01292 1.02366 1.21399 0.93474 0.84389 1.02517 1.48259 1.64140 1.13146 1.07712 1.19234 0.96095 0.93678 0.78096 1.21400 0.96981 1.31849 1.06236 0.92613 1.24925 0.97756 0.94950 0.96416 1.69923 1.35699 1.33382 1.14397 0.86583 0.84941 0.78193 0.77840 1.20321 1.21210 1.20155 1.20107 0.78874 0.87090 0.84691 1.90637 1.44842 1.17674 1.86752 1.22040 1.02164 0.94263 0.90792 1.61593 1.17694 1.43749 1.01480 1.21937 1.00412 0.95270 0.88819 1.22571 0.97035 1.01794 0.98800 1.22846 0.89877 0.78506 0.89131 1.21420 1.02592 0.99767 0.88530 1.22230 0.86792 0.97339 1.00787 1.88170 1.85998 1.39758 1.16436 1.22615 0.97745 0.96923 0.84967 1.22767 1.02778 0.97521 0.99863 1.22671 1.00711 0.95770 0.83202 1.88222 1.63270 1.42780 1.35849 0.92286 0.93079 0.91998 0.90009 0.91992 0.95149 0.93861 0.92699 0.92554 0.88629 0.94405 0.90526 0.91133 0.88993 0.88639 0.90049 0.94542 0.87275 0.92720 0.88541 0.90094 0.89998 0.88560 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.57 2.46 -175.06 -0.43 -13.00 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.49 7.35 -10.99 -0.08 10.41 16 14 O -0.52 -13.03 13.90 5.55 0.08 -12.95 16 15 C 0.04 0.59 4.00 -4.97 -0.02 0.57 16 16 N -0.52 -7.92 4.39 -236.10 -1.04 -8.95 16 17 C 0.06 0.75 5.33 -3.83 -0.02 0.73 16 18 C -0.16 -1.82 4.36 -26.67 -0.12 -1.94 16 19 C 0.27 3.49 1.08 -26.66 -0.03 3.46 16 20 C -0.09 -1.25 5.48 -26.67 -0.15 -1.39 16 21 C 0.06 0.90 4.97 -3.83 -0.02 0.88 16 22 O -0.38 -4.86 10.36 -59.03 -0.61 -5.47 16 23 C 0.05 0.47 6.60 37.29 0.25 0.72 16 24 C -0.19 -1.47 6.34 -26.47 -0.17 -1.63 16 25 C 0.05 0.47 6.62 37.29 0.25 0.72 16 26 O -0.38 -4.83 9.20 -59.03 -0.54 -5.37 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 36 H 0.10 1.24 7.03 -51.93 -0.37 0.88 16 37 H 0.04 0.44 7.75 -51.93 -0.40 0.04 16 38 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 39 H 0.07 0.63 5.14 -51.93 -0.27 0.37 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 43 H 0.04 0.58 7.76 -51.93 -0.40 0.18 16 44 H 0.11 2.14 5.78 -51.93 -0.30 1.84 16 45 H 0.05 0.42 6.59 -51.93 -0.34 0.08 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.05 0.43 6.49 -51.93 -0.34 0.09 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -33.71 381.31 -9.78 -43.49 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.50 Total: 0.34 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.20 Total: 5.22 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.73 Total: -47.96 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.08 Total: -23.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.71 -9.78 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815156663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.261 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds