Wall clock time and date at job start Fri Apr 10 2020 18:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.47022 * 2 1 4 4 C 1.46493 * 119.99597 * 269.99539 * 3 2 1 5 5 C 1.50696 * 109.47344 * 269.99894 * 4 3 2 6 6 H 1.07999 * 119.99782 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99940 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47040 * 59.99997 * 9 7 5 11 11 H 1.48495 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47101 * 299.99953 * 9 7 5 13 13 C 1.34767 * 119.99960 * 89.99714 * 3 2 1 14 14 O 1.21283 * 120.00031 * 180.02562 * 13 3 2 15 15 C 1.50704 * 120.00323 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47315 * 179.97438 * 15 13 3 17 17 C 1.46847 * 111.00111 * 169.99928 * 16 15 13 18 18 C 1.53043 * 109.50674 * 185.86808 * 17 16 15 19 19 C 1.53083 * 109.25791 * 300.86471 * 18 17 16 20 20 C 1.53055 * 109.24451 * 57.64601 * 19 18 17 21 21 C 1.46842 * 110.99944 * 294.25697 * 16 15 13 22 22 O 1.42897 * 109.49367 * 177.61975 * 19 18 17 23 23 C 1.43112 * 113.75325 * 61.33375 * 22 19 18 24 24 C 1.53252 * 108.94491 * 57.87327 * 23 22 19 25 25 C 1.53259 * 108.98033 * 305.42541 * 24 23 22 26 26 O 1.42918 * 109.45484 * 297.76423 * 19 18 17 27 27 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47085 * 300.00377 * 1 2 3 29 29 H 1.09003 * 109.46905 * 60.00210 * 1 2 3 30 30 H 1.08991 * 109.47095 * 239.99987 * 2 1 3 31 31 H 1.09000 * 109.46826 * 119.99260 * 2 1 3 32 32 H 1.09004 * 109.47385 * 30.00471 * 4 3 2 33 33 H 1.09004 * 109.46714 * 150.00089 * 4 3 2 34 34 H 0.97002 * 119.99973 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47065 * 60.00235 * 15 13 3 36 36 H 1.08998 * 109.47214 * 299.99897 * 15 13 3 37 37 H 1.08999 * 109.46453 * 65.85750 * 17 16 15 38 38 H 1.08997 * 109.46353 * 305.87969 * 17 16 15 39 39 H 1.09001 * 109.50758 * 180.93015 * 18 17 16 40 40 H 1.09001 * 109.51115 * 60.79944 * 18 17 16 41 41 H 1.08997 * 109.51100 * 62.31560 * 20 19 18 42 42 H 1.09007 * 109.49962 * 182.44465 * 20 19 18 43 43 H 1.08996 * 109.46285 * 294.16644 * 21 16 15 44 44 H 1.09001 * 109.46242 * 54.13604 * 21 16 15 45 45 H 1.08999 * 109.55766 * 298.03232 * 23 22 19 46 46 H 1.09000 * 109.64735 * 177.76324 * 23 22 19 47 47 H 1.09002 * 109.57123 * 65.30827 * 24 23 22 48 48 H 1.08994 * 109.56917 * 185.54826 * 24 23 22 49 49 H 1.09002 * 109.56023 * 174.42435 * 25 24 23 50 50 H 1.08996 * 109.55972 * 294.76265 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1495 2.3904 -2.8774 8 7 3.3498 3.1272 -3.6171 9 14 5.9135 2.0963 -3.4169 10 1 6.1403 0.6396 -3.5952 11 1 6.1611 2.7963 -4.7029 12 1 6.8414 2.6187 -2.3818 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3100 2.2063 3.5889 17 6 1.8570 1.6409 4.8662 18 6 2.0725 2.6647 5.9832 19 6 3.5588 3.0234 6.0595 20 6 4.0175 3.5642 4.7031 21 6 3.7453 2.5146 3.6229 22 8 3.7578 4.0202 7.0638 23 6 3.3804 3.5978 8.3781 24 6 4.1797 2.3431 8.7462 25 6 3.9742 1.2840 7.6577 26 8 4.3142 1.8553 6.3874 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6761 3.5182 -4.4427 35 1 2.6211 0.4188 2.5303 36 1 0.9431 1.0127 2.5299 37 1 2.4266 0.7380 5.0862 38 1 0.7974 1.3945 4.7989 39 1 1.7516 2.2390 6.9340 40 1 1.4919 3.5625 5.7712 41 1 3.4686 4.4767 4.4705 42 1 5.0853 3.7802 4.7398 43 1 4.3063 1.6076 3.8481 44 1 4.0565 2.9026 2.6530 45 1 2.3146 3.3698 8.3960 46 1 3.5960 4.3909 9.0940 47 1 5.2384 2.5926 8.8176 48 1 3.8306 1.9555 9.7032 49 1 4.6152 0.4254 7.8583 50 1 2.9310 0.9684 7.6480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815156663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:54 Heat of formation + Delta-G solvation = -140.463169 kcal Electronic energy + Delta-G solvation = -29765.298535 eV Core-core repulsion = 25791.782956 eV Total energy + Delta-G solvation = -3973.515580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82139 -40.74675 -38.53351 -36.83528 -36.63712 -34.93911 -34.25676 -32.27735 -31.82844 -31.53066 -29.57175 -27.63162 -26.88160 -25.13690 -24.61715 -24.20984 -23.58100 -22.04482 -20.35469 -19.82761 -18.61079 -18.39108 -18.03068 -17.57727 -17.31979 -16.92610 -16.52270 -16.25069 -16.05264 -15.75430 -15.49860 -15.36231 -15.18617 -14.63707 -14.43825 -14.28803 -14.22845 -14.11276 -13.63650 -13.46907 -13.27122 -13.19235 -13.10005 -13.01554 -12.66209 -12.61190 -12.46413 -12.42613 -12.24737 -12.11107 -12.03556 -11.91051 -11.79245 -11.72233 -11.61212 -10.98069 -10.63275 -10.48612 -10.33422 -9.38134 -9.25542 -8.20983 -6.35911 1.35842 1.40367 1.47461 1.90964 2.23798 2.41357 2.58880 2.62854 2.98257 3.08157 3.51369 3.66064 3.75276 3.82140 3.84865 4.05647 4.10353 4.18795 4.23296 4.29793 4.36041 4.38526 4.44754 4.45853 4.48675 4.49913 4.62973 4.68205 4.75477 4.78277 4.84945 4.87657 4.95580 4.99598 5.01105 5.05490 5.08504 5.12841 5.19503 5.25297 5.42384 5.60319 5.86877 5.90698 5.95873 6.09144 6.12898 6.26028 6.72545 6.87528 7.30625 7.58289 8.85625 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.003050 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.078031 B = 9177.362094 C =10069.056205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.578 6.578 15 C 0.054 3.946 16 N -0.538 5.538 17 C 0.065 3.935 18 C -0.158 4.158 19 C 0.277 3.723 20 C -0.087 4.087 21 C 0.067 3.933 22 O -0.409 6.409 23 C 0.043 3.957 24 C -0.186 4.186 25 C 0.043 3.957 26 O -0.403 6.403 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.020 0.980 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.047 0.953 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -9.468 26.104 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.077 4.077 16 N -0.263 5.263 17 C -0.062 4.062 18 C -0.196 4.196 19 C 0.200 3.800 20 C -0.125 4.125 21 C -0.061 4.061 22 O -0.331 6.331 23 C -0.032 4.032 24 C -0.223 4.223 25 C -0.033 4.033 26 O -0.325 6.325 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.127 0.873 47 H 0.086 0.914 48 H 0.131 0.869 49 H 0.127 0.873 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.940 -8.248 25.688 27.429 hybrid contribution 1.214 -0.335 -0.605 1.397 sum -3.726 -8.583 25.083 26.772 Atomic orbital electron populations 1.22151 0.94472 1.03469 1.01731 1.21738 0.95397 0.81384 1.03747 1.48289 1.64310 1.15071 1.06149 1.18639 0.95081 0.91451 0.80483 1.21686 0.97959 1.31902 1.06468 0.92985 1.25847 1.02289 0.94513 0.96473 1.70048 1.37791 1.34182 1.14846 0.85506 0.79157 0.79038 0.77344 1.18403 1.20336 1.20432 1.21184 0.77440 0.86733 0.86282 1.90616 1.47080 1.20377 1.87689 1.21968 1.04513 0.93743 0.87456 1.61533 1.16769 1.44841 1.03178 1.22063 1.01842 0.95439 0.86830 1.22530 0.95502 1.01494 1.00029 1.22561 0.90772 0.78673 0.87947 1.21307 1.01896 0.98931 0.90321 1.21932 0.87859 0.97418 0.98844 1.88126 1.86538 1.40335 1.18083 1.22931 0.98895 0.98057 0.83339 1.22742 1.01962 0.96702 1.00931 1.22983 1.02103 0.96288 0.81905 1.88181 1.63802 1.42581 1.37913 0.88597 0.91928 0.94454 0.91183 0.88332 0.96179 0.98741 0.92445 0.90467 0.85162 0.93458 0.87945 0.88164 0.89951 0.90264 0.90981 0.94380 0.91725 0.91111 0.87267 0.91379 0.86900 0.87274 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 2 C 0.10 3.00 5.93 86.38 0.51 3.51 16 3 N -0.61 -25.92 2.46 -826.16 -2.03 -27.95 16 4 C 0.27 14.61 5.16 85.63 0.44 15.05 16 5 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.50 20.92 7.35 87.66 0.64 21.56 16 14 O -0.58 -30.60 13.90 -3.04 -0.04 -30.65 16 15 C 0.05 1.54 4.00 85.56 0.34 1.88 16 16 N -0.54 -15.79 4.39 -900.88 -3.96 -19.75 16 17 C 0.07 1.33 5.33 86.33 0.46 1.79 16 18 C -0.16 -3.10 4.36 30.64 0.13 -2.97 16 19 C 0.28 6.82 1.08 30.64 0.03 6.86 16 20 C -0.09 -2.65 5.48 30.63 0.17 -2.48 16 21 C 0.07 2.24 4.97 86.33 0.43 2.67 16 22 O -0.41 -10.06 10.36 -126.23 -1.31 -11.37 16 23 C 0.04 0.66 6.60 72.07 0.48 1.13 16 24 C -0.19 -2.30 6.34 30.77 0.20 -2.10 16 25 C 0.04 0.63 6.62 72.07 0.48 1.10 16 26 O -0.40 -9.57 9.20 -126.23 -1.16 -10.73 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 31 H 0.10 2.26 6.44 -2.39 -0.02 2.24 16 32 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 33 H -0.01 -0.36 7.42 -2.38 -0.02 -0.37 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.08 1.93 7.38 -2.39 -0.02 1.91 16 36 H 0.13 2.84 7.03 -2.39 -0.02 2.83 16 37 H 0.05 0.91 7.75 -2.39 -0.02 0.89 16 38 H 0.10 1.59 8.01 -2.39 -0.02 1.57 16 39 H 0.10 1.38 5.14 -2.39 -0.01 1.36 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.04 1.22 7.76 -2.39 -0.02 1.20 16 44 H 0.06 2.73 5.78 -2.39 -0.01 2.71 16 45 H 0.07 0.83 6.59 -2.39 -0.02 0.82 16 46 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 48 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.07 0.80 6.49 -2.39 -0.02 0.78 16 Total: -1.00 -79.51 381.31 0.48 -79.03 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.92 Total: 16.45 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.75 Total: 14.20 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -5.70 Total: -104.78 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -2.51 Total: -52.75 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.51 0.48 -79.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815156663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.433 kcal (2) G-P(sol) polarization free energy of solvation -79.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds