Wall clock time and date at job start Fri Apr 10 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47217 * 2 1 4 4 C 1.42892 * 114.00236 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.52231 * 329.87498 * 4 3 2 6 6 C 1.53097 * 109.52112 * 89.99896 * 4 3 2 7 7 O 1.42903 * 109.41608 * 177.51528 * 6 4 3 8 8 C 1.42904 * 114.09532 * 298.84529 * 7 6 4 9 9 C 1.53090 * 109.41660 * 61.15652 * 8 7 6 10 10 C 1.53169 * 109.21665 * 302.35868 * 9 8 7 11 11 H 1.08996 * 109.54242 * 297.14810 * 10 9 8 12 12 C 1.53002 * 109.54649 * 176.88040 * 10 9 8 13 13 C 1.50696 * 109.46952 * 64.99746 * 12 10 9 14 14 O 1.21274 * 120.00156 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99618 * 179.97438 * 13 12 10 16 16 C 1.46959 * 120.59734 * 359.72517 * 15 13 12 17 17 C 1.53809 * 108.40222 * 124.75409 * 16 15 13 18 18 N 1.46966 * 108.57966 * 49.63785 * 17 16 15 19 19 C 1.36937 * 120.59333 * 124.62299 * 18 17 16 20 20 H 1.08008 * 119.99847 * 208.22864 * 19 18 17 21 21 C 1.38807 * 120.00140 * 28.23751 * 19 18 17 22 22 N 1.31619 * 120.00038 * 17.57460 * 21 19 18 23 23 Si 1.86801 * 119.99915 * 197.58171 * 21 19 18 24 24 H 1.48495 * 109.47242 * 59.99637 * 23 21 19 25 25 H 1.48501 * 109.47155 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46857 * 299.99442 * 23 21 19 27 27 C 1.46964 * 118.81012 * 304.65202 * 18 17 16 28 28 C 1.46966 * 120.59330 * 179.97438 * 15 13 12 29 29 H 1.09007 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47260 * 299.99418 * 1 2 3 31 31 H 1.08998 * 109.47290 * 60.00380 * 1 2 3 32 32 H 1.09001 * 109.46886 * 239.99712 * 2 1 3 33 33 H 1.08996 * 109.47228 * 120.00151 * 2 1 3 34 34 H 1.09003 * 109.47982 * 57.53506 * 6 4 3 35 35 H 1.08997 * 109.48942 * 297.50574 * 6 4 3 36 36 H 1.08997 * 109.48269 * 301.16796 * 8 7 6 37 37 H 1.09005 * 109.48675 * 181.14888 * 8 7 6 38 38 H 1.09004 * 109.52195 * 62.29853 * 9 8 7 39 39 H 1.09004 * 109.52299 * 182.41871 * 9 8 7 40 40 H 1.08995 * 109.47460 * 185.00179 * 12 10 9 41 41 H 1.09003 * 109.46523 * 305.00021 * 12 10 9 42 42 H 1.09001 * 109.61440 * 244.53923 * 16 15 13 43 43 H 1.09004 * 109.61159 * 5.05047 * 16 15 13 44 44 H 1.08998 * 109.74493 * 289.85317 * 17 16 15 45 45 H 1.08999 * 109.68098 * 169.38718 * 17 16 15 46 46 H 0.97006 * 119.99828 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.60844 * 295.47505 * 27 18 17 48 48 H 1.09003 * 109.75221 * 175.05571 * 27 18 17 49 49 H 1.09001 * 109.61134 * 354.95558 * 28 15 13 50 50 H 1.09005 * 109.60864 * 115.29104 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8639 0.6031 0.5165 6 6 3.9414 1.5003 -1.4422 7 8 5.3602 1.6713 -1.4394 8 6 5.8004 2.8845 -0.8258 9 6 5.3645 2.8999 0.6417 10 6 3.8418 2.7518 0.7169 11 1 3.3681 3.6046 0.2307 12 6 3.4054 2.6882 2.1820 13 6 3.7111 4.0016 2.8546 14 8 4.2267 4.9002 2.2242 15 7 3.4105 4.1779 4.1566 16 6 2.7791 3.1003 4.9310 17 6 3.6490 2.8169 6.1674 18 7 3.9413 4.0924 6.8365 19 6 3.6351 4.2718 8.1591 20 1 3.4136 5.2607 8.5328 21 6 3.6095 3.1829 9.0195 22 7 4.1997 2.0580 8.6752 23 14 2.7370 3.3139 10.6661 24 1 1.3031 3.6286 10.4428 25 1 2.8530 2.0235 11.3918 26 1 3.3611 4.3935 11.4724 27 6 4.5677 5.1719 6.0606 28 6 3.7034 5.4531 4.8258 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.4760 2.3331 -1.9694 35 1 3.6889 0.5660 -1.9434 36 1 5.3593 3.7354 -1.3450 37 1 6.8871 2.9475 -0.8829 38 1 5.8375 2.0727 1.1709 39 1 5.6618 3.8431 1.1001 40 1 2.3342 2.4939 2.2339 41 1 3.9449 1.8869 2.6872 42 1 1.7825 3.4109 5.2450 43 1 2.7086 2.2019 4.3178 44 1 4.5812 2.3426 5.8609 45 1 3.1119 2.1598 6.8514 46 1 4.1815 1.2969 9.2764 47 1 5.5654 4.8653 5.7464 48 1 4.6372 6.0721 6.6714 49 1 4.2435 6.1090 4.1430 50 1 2.7711 5.9293 5.1297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865983859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:22 Heat of formation + Delta-G solvation = -107.763643 kcal Electronic energy + Delta-G solvation = -29538.912402 eV Core-core repulsion = 25566.814780 eV Total energy + Delta-G solvation = -3972.097622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.36884 -39.25640 -37.62392 -36.86743 -34.35127 -33.87037 -31.74457 -31.50226 -30.27683 -29.89627 -28.74146 -26.79191 -24.29072 -23.65068 -23.30464 -22.78385 -22.54465 -20.65691 -20.05702 -18.52026 -17.45805 -17.03630 -16.58979 -16.18797 -15.80305 -15.70543 -15.33237 -15.27343 -14.78258 -14.70635 -14.32130 -13.71942 -13.64551 -13.56868 -13.30750 -13.29390 -12.85047 -12.75852 -12.58284 -12.48748 -12.39485 -11.80177 -11.69786 -11.59729 -11.37662 -11.27637 -11.00721 -10.83121 -10.78770 -10.76548 -10.52868 -10.50761 -10.26433 -10.14580 -10.04255 -9.87164 -9.47196 -9.15738 -8.61722 -8.23624 -6.74392 -5.89012 -3.33159 3.00153 3.27084 3.32897 3.38862 3.39340 3.45543 3.84330 4.41326 4.48106 4.54836 4.67053 4.83013 4.86915 4.91887 5.01280 5.10992 5.13455 5.21289 5.23795 5.31495 5.38168 5.41219 5.45789 5.51508 5.57490 5.67867 5.72753 5.76788 5.81218 5.87285 5.89398 5.93840 5.95356 6.11115 6.17198 6.22498 6.25037 6.32968 6.42568 6.76130 6.84054 6.91520 7.13940 7.18478 7.42377 7.68955 7.92983 8.32606 8.57853 9.08780 9.71415 10.28476 11.18721 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.003070 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.172956 B = 9119.244329 C =10115.299244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.376 6.376 4 C 0.061 3.939 5 H 0.070 0.930 6 C 0.044 3.956 7 O -0.381 6.381 8 C 0.059 3.941 9 C -0.154 4.154 10 C -0.065 4.065 11 H 0.086 0.914 12 C -0.131 4.131 13 C 0.512 3.488 14 O -0.560 6.560 15 N -0.597 5.597 16 C 0.079 3.921 17 C 0.158 3.842 18 N -0.591 5.591 19 C -0.257 4.257 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.903 5.903 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.132 3.868 28 C 0.095 3.905 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.023 0.977 45 H 0.100 0.900 46 H 0.256 0.744 47 H 0.023 0.977 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -3.882 -18.384 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.295 6.295 4 C 0.003 3.997 5 H 0.088 0.912 6 C -0.033 4.033 7 O -0.300 6.300 8 C -0.017 4.017 9 C -0.192 4.192 10 C -0.084 4.084 11 H 0.105 0.895 12 C -0.171 4.171 13 C 0.301 3.699 14 O -0.440 6.440 15 N -0.329 5.329 16 C -0.045 4.045 17 C 0.031 3.969 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.734 3.266 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.005 3.995 28 C -0.029 4.029 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.041 0.959 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.327 -3.542 -18.641 19.264 hybrid contribution -0.542 -0.204 1.178 1.313 sum -3.870 -3.747 -17.463 18.275 Atomic orbital electron populations 1.21746 0.93658 1.02248 1.03233 1.22551 0.95669 0.83838 1.00168 1.87937 1.20197 1.26399 1.94977 1.22844 0.81526 0.98988 0.96352 0.91151 1.22984 0.81907 1.02310 0.96130 1.87928 1.20907 1.41468 1.79672 1.22667 1.00083 0.86470 0.92481 1.22414 0.94488 1.04923 0.97358 1.21020 0.96178 0.96819 0.94404 0.89537 1.21645 1.03791 0.96369 0.95326 1.20529 0.78237 0.89496 0.81676 1.90579 1.45054 1.44371 1.64033 1.48084 1.59754 1.15805 1.09221 1.22768 0.97782 0.88690 0.95238 1.21254 0.96066 0.89056 0.90518 1.43973 1.69235 1.10844 1.07334 1.19173 1.41010 0.94389 0.84049 0.91515 1.25057 0.99385 0.97230 0.97792 1.70008 1.43649 1.03609 1.37391 0.86338 0.79876 0.76896 0.83481 1.20940 1.21572 1.20810 1.21278 0.93663 0.93179 0.91346 1.22176 1.00245 0.84943 0.95508 0.91137 0.91632 0.91951 0.93517 0.93051 0.92344 0.89089 0.92888 0.88628 0.91370 0.87901 0.88405 0.89148 0.91820 0.91029 0.95893 0.88218 0.93431 0.95945 0.91596 0.90040 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.47 6.47 37.16 0.24 0.71 16 3 O -0.38 -4.15 9.40 -35.23 -0.33 -4.48 16 4 C 0.06 0.66 2.22 -26.52 -0.06 0.60 16 5 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 6 C 0.04 0.45 6.46 37.21 0.24 0.69 16 7 O -0.38 -4.49 10.77 -35.23 -0.38 -4.87 16 8 C 0.06 0.65 6.84 37.20 0.25 0.90 16 9 C -0.15 -1.90 5.12 -26.60 -0.14 -2.04 16 10 C -0.07 -0.81 1.64 -90.37 -0.15 -0.96 16 11 H 0.09 1.20 7.97 -51.93 -0.41 0.79 16 12 C -0.13 -1.77 3.47 -27.88 -0.10 -1.86 16 13 C 0.51 8.65 7.43 -10.99 -0.08 8.57 16 14 O -0.56 -10.55 13.38 5.56 0.07 -10.48 16 15 N -0.60 -10.70 2.94 -172.25 -0.51 -11.20 16 16 C 0.08 1.41 6.53 -3.37 -0.02 1.39 16 17 C 0.16 3.52 5.54 -3.37 -0.02 3.51 16 18 N -0.59 -14.30 2.97 -171.79 -0.51 -14.81 16 19 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 20 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 21 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 22 N -0.90 -25.11 11.20 55.49 0.62 -24.48 16 23 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.13 2.76 6.67 -3.62 -0.02 2.74 16 28 C 0.10 1.76 6.59 -3.62 -0.02 1.73 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.34 7.94 -51.93 -0.41 -0.07 16 33 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.80 7.94 -51.93 -0.41 0.38 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.48 6.03 -51.93 -0.31 1.16 16 40 H 0.10 1.26 7.43 -51.93 -0.39 0.87 16 41 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.06 5.91 -51.93 -0.31 0.76 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.10 2.46 5.98 -51.93 -0.31 2.15 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 49 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -30.16 384.81 -8.74 -38.90 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.76 Total: 1.44 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 0.28 Total: 8.30 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.39 Total: -50.50 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.64 Total: -19.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.16 -8.74 -38.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865983859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.867 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds