Wall clock time and date at job start Fri Apr 10 2020 18:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34804 * 116.99483 * 2 1 4 4 O 1.21537 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.46951 * 119.99958 * 179.97438 * 3 2 1 6 6 C 1.33081 * 120.00044 * 173.50882 * 5 3 2 7 7 C 1.50702 * 119.99945 * 169.32587 * 6 5 3 8 8 C 1.50697 * 120.00222 * 349.60251 * 6 5 3 9 9 N 1.46892 * 109.47404 * 94.91503 * 8 6 5 10 10 C 1.46901 * 110.99645 * 66.04997 * 9 8 6 11 11 C 1.50700 * 109.47095 * 59.01618 * 10 9 8 12 12 H 1.07993 * 120.00209 * 4.38666 * 11 10 9 13 13 C 1.37882 * 119.99658 * 184.38677 * 11 10 9 14 14 N 1.31514 * 119.99794 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00287 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46904 * 89.99603 * 15 13 11 17 17 H 1.48497 * 109.47097 * 209.99951 * 15 13 11 18 18 H 1.48501 * 109.46777 * 329.99783 * 15 13 11 19 19 C 1.46900 * 111.00209 * 189.99995 * 9 8 6 20 20 C 1.53005 * 109.47210 * 164.05603 * 19 9 8 21 21 N 1.46896 * 109.47207 * 185.44260 * 20 19 9 22 22 C 1.47007 * 111.00414 * 293.63838 * 21 20 19 23 23 C 1.53101 * 109.26125 * 177.60582 * 22 21 20 24 24 O 1.43016 * 109.25639 * 56.84977 * 23 22 21 25 25 C 1.43019 * 113.73788 * 301.33118 * 24 23 22 26 26 C 1.47012 * 111.00171 * 169.99953 * 21 20 19 27 27 H 1.08997 * 109.47569 * 299.99426 * 1 2 3 28 28 H 1.08999 * 109.47396 * 60.00032 * 1 2 3 29 29 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00151 * 353.51467 * 5 3 2 31 31 H 1.09002 * 109.46777 * 270.27244 * 7 6 5 32 32 H 1.08992 * 109.47376 * 30.27205 * 7 6 5 33 33 H 1.09002 * 109.47104 * 150.28020 * 7 6 5 34 34 H 1.08999 * 109.47278 * 214.92548 * 8 6 5 35 35 H 1.09007 * 109.47047 * 334.92030 * 8 6 5 36 36 H 1.09010 * 109.46942 * 179.01210 * 10 9 8 37 37 H 1.09000 * 109.47052 * 299.00974 * 10 9 8 38 38 H 0.97006 * 120.00190 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.47430 * 284.05790 * 19 9 8 40 40 H 1.08997 * 109.47003 * 44.05911 * 19 9 8 41 41 H 1.08998 * 109.47091 * 305.44260 * 20 19 9 42 42 H 1.09005 * 109.46846 * 65.44515 * 20 19 9 43 43 H 1.09004 * 109.50701 * 297.54130 * 22 21 20 44 44 H 1.08996 * 109.50791 * 57.67053 * 22 21 20 45 45 H 1.08995 * 109.50797 * 296.91608 * 23 22 21 46 46 H 1.08997 * 109.54221 * 176.80350 * 23 22 21 47 47 H 1.09006 * 109.50307 * 298.73769 * 25 24 23 48 48 H 1.08993 * 109.54296 * 178.62894 * 25 24 23 49 49 H 1.09002 * 109.50770 * 302.33597 * 26 21 20 50 50 H 1.09000 * 109.50485 * 62.41457 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2012 0.0000 4 8 1.4018 2.2204 0.0005 5 6 3.5314 1.2782 0.0006 6 6 4.1359 2.4566 -0.1297 7 6 5.6192 2.5731 0.1098 8 6 3.3362 3.6757 -0.5106 9 7 2.9445 4.4035 0.7037 10 6 4.1206 4.9570 1.3881 11 6 4.8512 5.8895 0.4566 12 1 4.4415 6.1096 -0.5180 13 6 6.0429 6.4615 0.8488 14 7 6.6808 7.2749 0.0357 15 14 6.7521 6.0801 2.5343 16 1 7.6390 4.8927 2.4410 17 1 7.5348 7.2459 3.0174 18 1 5.6461 5.7984 3.4844 19 6 1.9706 5.4588 0.3940 20 6 1.2929 5.9224 1.6850 21 7 0.2292 6.8826 1.3622 22 6 0.7896 8.1221 0.8047 23 6 -0.3535 9.0684 0.4279 24 8 -1.1641 9.3113 1.5808 25 6 -1.7267 8.1257 2.1493 26 6 -0.5976 7.1699 2.5434 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.1193 0.3785 0.1066 31 1 5.8010 2.7964 1.1611 32 1 6.1043 1.6326 -0.1511 33 1 6.0250 3.3747 -0.5073 34 1 3.9417 4.3243 -1.1437 35 1 2.4426 3.3688 -1.0543 36 1 3.8007 5.5056 2.2741 37 1 4.7846 4.1447 1.6837 38 1 7.5194 7.6770 0.3114 39 1 2.4832 6.3014 -0.0700 40 1 1.2182 5.0690 -0.2916 41 1 0.8626 5.0625 2.1985 42 1 2.0298 6.4000 2.3309 43 1 1.4275 8.5998 1.5484 44 1 1.3767 7.8888 -0.0835 45 1 -0.9604 8.6127 -0.3543 46 1 0.0577 10.0111 0.0669 47 1 -2.3736 7.6425 1.4170 48 1 -2.3086 8.3859 3.0334 49 1 -1.0230 6.2414 2.9245 50 1 0.0183 7.6316 3.3151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929774132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:38 Heat of formation + Delta-G solvation = -107.458427 kcal Electronic energy + Delta-G solvation = -29682.624713 eV Core-core repulsion = 25710.540326 eV Total energy + Delta-G solvation = -3972.084387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30602 -40.59935 -39.26416 -37.46088 -36.71448 -35.34930 -34.40462 -32.20191 -30.97585 -29.83406 -29.70896 -27.81331 -27.38781 -25.80562 -25.00737 -23.85910 -22.77083 -21.55164 -21.09285 -19.61399 -19.13720 -18.41953 -17.74088 -17.20060 -17.15890 -16.95576 -16.62452 -16.34947 -16.20721 -16.02457 -15.89253 -15.62732 -14.89203 -14.78175 -14.62835 -14.48609 -14.08560 -13.86905 -13.79185 -13.67904 -13.34573 -13.23091 -13.04244 -12.80203 -12.78632 -12.68332 -12.38809 -12.37391 -12.21275 -12.05435 -11.85740 -11.72537 -11.66562 -11.56985 -11.40986 -10.79734 -10.75317 -10.69155 -10.11682 -9.46926 -8.88239 -8.28564 -6.30568 0.23460 1.30783 1.35402 1.44425 1.98746 2.10396 2.32851 2.64877 2.92839 3.07153 3.51239 3.88089 3.91601 3.95510 4.01362 4.04224 4.14273 4.17107 4.32714 4.34246 4.41493 4.42902 4.46515 4.54086 4.58749 4.65087 4.68572 4.73796 4.75102 4.77393 4.81130 4.85891 4.87152 4.93503 5.01153 5.07094 5.10092 5.13941 5.20629 5.36516 5.51071 5.55141 5.74452 5.87679 5.96628 6.14058 6.15820 6.40668 6.41763 6.74496 7.00254 7.34794 8.87301 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007343 B = 0.005437 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3812.255241 B = 5149.085780 C = 8258.750969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.485 3.515 4 O -0.509 6.509 5 C -0.204 4.204 6 C 0.002 3.998 7 C -0.121 4.121 8 C 0.081 3.919 9 N -0.506 5.506 10 C 0.154 3.846 11 C -0.529 4.529 12 H 0.036 0.964 13 C 0.024 3.976 14 N -0.943 5.943 15 Si 0.927 3.073 16 H -0.254 1.254 17 H -0.291 1.291 18 H -0.257 1.257 19 C 0.083 3.917 20 C 0.082 3.918 21 N -0.536 5.536 22 C 0.017 3.983 23 C 0.072 3.928 24 O -0.403 6.403 25 C 0.066 3.934 26 C 0.016 3.984 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.130 0.870 30 H 0.166 0.834 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.088 0.912 36 H 0.015 0.985 37 H 0.040 0.960 38 H 0.264 0.736 39 H 0.017 0.983 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.014 0.986 43 H 0.022 0.978 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.067 0.933 48 H 0.121 0.879 49 H 0.100 0.900 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -10.334 2.581 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.332 3.668 4 O -0.399 6.399 5 C -0.223 4.223 6 C 0.001 3.999 7 C -0.177 4.177 8 C -0.046 4.046 9 N -0.229 5.229 10 C 0.027 3.973 11 C -0.568 4.568 12 H 0.054 0.946 13 C -0.175 4.175 14 N -0.584 5.584 15 Si 0.751 3.249 16 H -0.178 1.178 17 H -0.217 1.217 18 H -0.181 1.181 19 C -0.045 4.045 20 C -0.047 4.047 21 N -0.261 5.261 22 C -0.111 4.111 23 C -0.005 4.005 24 O -0.322 6.322 25 C -0.011 4.011 26 C -0.112 4.112 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.183 0.817 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.127 0.873 47 H 0.085 0.915 48 H 0.139 0.861 49 H 0.118 0.882 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.807 -10.308 2.607 17.427 hybrid contribution 1.726 1.204 0.394 2.141 sum -12.081 -9.105 3.001 15.423 Atomic orbital electron populations 1.23416 0.75278 1.05186 1.02110 1.86570 1.24549 1.32653 1.84670 1.21814 0.90597 0.81232 0.73185 1.90880 1.67600 1.35912 1.45547 1.21780 0.89554 0.99358 1.11644 1.22577 0.96755 0.93472 0.87100 1.21072 0.90350 1.03674 1.02652 1.21347 0.98082 0.92693 0.92521 1.62317 1.12559 1.25221 1.22772 1.20248 0.89189 0.93926 0.93983 1.21670 1.06092 1.27073 1.01951 0.94620 1.25658 0.97171 0.94411 1.00210 1.70059 1.17385 1.32597 1.38321 0.86022 0.79324 0.78541 0.81029 1.17810 1.21718 1.18080 1.21666 0.93701 0.92802 0.96379 1.21808 0.91520 0.94856 0.96469 1.62197 1.22290 1.11131 1.30528 1.22786 0.97461 0.90851 1.00021 1.22680 0.90716 0.99298 0.87804 1.87934 1.66776 1.32132 1.45345 1.22814 0.93847 0.84774 0.99620 1.22880 0.95987 1.01139 0.91166 0.92522 0.92420 0.85217 0.81679 0.90349 0.88186 0.92346 0.95759 0.89370 0.96712 0.94173 0.92735 0.96484 0.91695 0.90174 0.96822 0.95934 0.90642 0.91397 0.87252 0.91510 0.86078 0.88183 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.57 113.37 1.20 1.83 16 2 O -0.37 -9.35 10.58 -57.16 -0.60 -9.95 16 3 C 0.48 14.75 7.72 70.10 0.54 15.29 16 4 O -0.51 -18.28 12.65 19.72 0.25 -18.03 16 5 C -0.20 -5.71 9.75 23.40 0.23 -5.49 16 6 C 0.00 0.08 5.16 -17.60 -0.09 -0.01 16 7 C -0.12 -3.80 9.00 71.24 0.64 -3.16 16 8 C 0.08 3.21 3.90 85.56 0.33 3.55 16 9 N -0.51 -21.21 4.09 -905.37 -3.70 -24.92 16 10 C 0.15 7.11 3.60 85.56 0.31 7.42 16 11 C -0.53 -28.45 7.89 25.60 0.20 -28.25 16 12 H 0.04 2.17 6.20 -2.91 -0.02 2.15 16 13 C 0.02 1.32 5.47 84.66 0.46 1.79 16 14 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 15 Si 0.93 42.37 27.38 68.60 1.88 44.25 16 16 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 18 H -0.26 -11.30 6.67 99.48 0.66 -10.64 16 19 C 0.08 3.41 4.62 86.30 0.40 3.81 16 20 C 0.08 3.01 4.90 86.31 0.42 3.43 16 21 N -0.54 -17.23 4.73 -895.23 -4.23 -21.46 16 22 C 0.02 0.57 5.44 86.32 0.47 1.04 16 23 C 0.07 1.92 7.01 72.02 0.50 2.42 16 24 O -0.40 -11.04 10.83 -148.98 -1.61 -12.66 16 25 C 0.07 1.47 7.01 72.01 0.50 1.97 16 26 C 0.02 0.43 5.64 86.31 0.49 0.91 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.17 3.46 8.04 -2.91 -0.02 3.43 16 31 H 0.08 2.57 6.48 -2.39 -0.02 2.55 16 32 H 0.10 2.30 8.06 -2.39 -0.02 2.28 16 33 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 34 H 0.02 1.11 6.27 -2.39 -0.01 1.10 16 35 H 0.09 3.49 5.33 -2.38 -0.01 3.48 16 36 H 0.01 0.72 6.01 -2.38 -0.01 0.70 16 37 H 0.04 1.79 4.27 -2.39 -0.01 1.78 16 38 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 39 H 0.02 0.80 5.09 -2.39 -0.01 0.78 16 40 H 0.06 2.64 7.81 -2.39 -0.02 2.62 16 41 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 42 H 0.01 0.56 6.87 -2.38 -0.02 0.54 16 43 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.08 2.72 6.50 -2.39 -0.02 2.70 16 45 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 46 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 50 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.29 385.47 -0.23 -67.52 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.88 Total: 25.05 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.61 Total: 6.55 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -7.63 Total: -102.73 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.97 Total: -40.64 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.25 kcal Total: -67.29 -0.23 -67.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.936 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds