Wall clock time and date at job start Fri Apr 10 2020 18:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47091 * 2 1 4 4 C 1.34228 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99603 * 180.02562 * 4 3 2 7 7 H 1.08991 * 115.55623 * 34.27748 * 6 4 3 8 8 C 1.53002 * 117.49530 * 248.60192 * 6 4 3 9 9 C 1.52992 * 60.00181 * 252.51620 * 8 6 4 10 10 H 1.09004 * 117.50013 * 107.49149 * 9 8 6 11 11 C 1.50702 * 117.49987 * 252.51077 * 9 8 6 12 12 O 1.21285 * 119.99867 * 68.62233 * 11 9 8 13 13 N 1.34767 * 120.00207 * 248.62360 * 11 9 8 14 14 C 1.46502 * 120.00000 * 359.97438 * 13 11 9 15 15 C 1.50699 * 109.47347 * 90.00233 * 14 13 11 16 16 H 1.07999 * 119.99789 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99871 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99836 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46960 * 89.99968 * 19 17 15 21 21 H 1.48502 * 109.47066 * 209.99861 * 19 17 15 22 22 H 1.48497 * 109.47050 * 330.00249 * 19 17 15 23 23 C 1.46503 * 120.00157 * 179.97438 * 13 11 9 24 24 C 1.53003 * 109.47005 * 90.00004 * 23 13 11 25 25 C 1.52999 * 109.47065 * 179.97438 * 24 23 13 26 26 N 1.46903 * 109.46986 * 179.97438 * 25 24 23 27 27 C 1.46904 * 111.00026 * 170.00347 * 26 25 24 28 28 C 1.46900 * 111.00244 * 293.95831 * 26 25 24 29 29 H 1.08992 * 109.47056 * 300.00206 * 1 2 3 30 30 H 1.09004 * 109.47006 * 60.00090 * 1 2 3 31 31 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47142 * 239.99963 * 2 1 3 33 33 H 1.09004 * 109.47006 * 119.99910 * 2 1 3 34 34 H 1.09007 * 117.50012 * 0.02562 * 8 6 4 35 35 H 1.08996 * 117.49825 * 144.99725 * 8 6 4 36 36 H 1.09003 * 109.47052 * 209.99678 * 14 13 11 37 37 H 1.08992 * 109.47384 * 329.99689 * 14 13 11 38 38 H 0.97006 * 119.99878 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47589 * 209.99723 * 23 13 11 40 40 H 1.08997 * 109.47080 * 330.00087 * 23 13 11 41 41 H 1.08997 * 109.47180 * 300.00385 * 24 23 13 42 42 H 1.09001 * 109.46670 * 60.00240 * 24 23 13 43 43 H 1.08997 * 109.47568 * 300.00310 * 25 24 23 44 44 H 1.09001 * 109.47048 * 60.00633 * 25 24 23 45 45 H 1.08999 * 109.46755 * 59.99997 * 27 26 25 46 46 H 1.09002 * 109.47036 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.46697 * 299.99962 * 27 26 25 48 48 H 1.09002 * 109.46938 * 59.99621 * 28 26 25 49 49 H 1.09000 * 109.47123 * 180.02562 * 28 26 25 50 50 H 1.08995 * 109.47106 * 299.99988 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.3493 3.6824 0.5549 8 6 4.6486 3.4014 -1.2621 9 6 5.4448 3.0716 0.0020 10 1 6.0309 2.1525 0.0023 11 6 6.0415 4.2235 0.7689 12 8 5.3185 5.0012 1.3550 13 7 7.3785 4.3895 0.8035 14 6 8.2518 3.4498 0.0960 15 6 8.4807 3.9387 -1.3110 16 1 8.0213 4.8573 -1.6449 17 6 9.2759 3.2128 -2.1723 18 7 9.4752 3.6393 -3.4003 19 14 10.0700 1.6236 -1.5949 20 1 9.1582 0.4851 -1.8732 21 1 11.3514 1.4197 -2.3172 22 1 10.3317 1.7029 -0.1353 23 6 7.9585 5.5096 1.5486 24 6 8.2322 5.0761 2.9901 25 6 8.8385 6.2457 3.7681 26 7 9.1007 5.8295 5.1524 27 6 9.8955 6.8394 5.8641 28 6 7.8467 5.5489 5.8642 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.7106 2.6995 -2.0938 35 1 4.5561 4.4515 -1.5394 36 1 9.2072 3.3797 0.6161 37 1 7.7809 2.4673 0.0672 38 1 10.0349 3.1287 -4.0062 39 1 8.8930 5.8145 1.0773 40 1 7.2608 6.3470 1.5472 41 1 7.2978 4.7712 3.4614 42 1 8.9299 4.2387 2.9914 43 1 9.7730 6.5502 3.2967 44 1 8.1411 7.0833 3.7669 45 1 9.3521 7.7842 5.8801 46 1 10.0754 6.5060 6.8862 47 1 10.8489 6.9770 5.3540 48 1 7.3107 4.7485 5.3541 49 1 8.0697 5.2435 6.8865 50 1 7.2292 6.4470 5.8802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930706707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:44 Heat of formation + Delta-G solvation = -111.148717 kcal Electronic energy + Delta-G solvation = -28381.251818 eV Core-core repulsion = 24409.007409 eV Total energy + Delta-G solvation = -3972.244410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92353 -40.93505 -38.79160 -38.15179 -37.14930 -36.64667 -34.69602 -33.10099 -32.62606 -29.83121 -28.50517 -28.03639 -26.59186 -25.08089 -24.44536 -23.69033 -23.15645 -21.80332 -21.57678 -19.89139 -19.17380 -19.01448 -18.16952 -17.63327 -17.43244 -17.15700 -16.53160 -16.43102 -16.09283 -15.98250 -15.46295 -15.26736 -15.04479 -14.87834 -14.78992 -14.41935 -13.93831 -13.69881 -13.65148 -13.41927 -13.33383 -13.28282 -12.98794 -12.95122 -12.89986 -12.62529 -12.52646 -12.50879 -12.42974 -12.22807 -11.99534 -11.88941 -11.73655 -11.66796 -11.59158 -11.55474 -11.48786 -10.86659 -10.71807 -9.49498 -9.33128 -8.27952 -6.33485 0.87509 1.35347 1.39973 1.42490 1.49437 1.54267 2.17340 2.34941 2.73266 3.03599 3.06703 3.43774 3.49733 3.67096 3.82831 3.96485 3.99542 4.05239 4.07031 4.10938 4.21384 4.33292 4.39320 4.43048 4.49476 4.56803 4.61685 4.64881 4.67714 4.73637 4.79202 4.79646 4.84527 4.89278 4.92111 4.94671 4.98912 5.01482 5.10999 5.13055 5.26350 5.37610 5.46094 5.65514 6.03851 6.10695 6.18673 6.53919 6.61560 6.71468 7.17589 7.32823 8.87773 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.003974 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3764.177300 B = 7043.325047 C = 9826.139064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.352 6.352 4 C 0.501 3.499 5 O -0.532 6.532 6 C -0.133 4.133 7 H 0.154 0.846 8 C -0.095 4.095 9 C -0.158 4.158 10 H 0.129 0.871 11 C 0.547 3.453 12 O -0.581 6.581 13 N -0.586 5.586 14 C 0.216 3.784 15 C -0.531 4.531 16 H 0.039 0.961 17 C 0.027 3.973 18 N -0.938 5.938 19 Si 0.928 3.072 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.241 1.241 23 C 0.120 3.880 24 C -0.115 4.115 25 C 0.064 3.936 26 N -0.563 5.563 27 C 0.025 3.975 28 C 0.023 3.977 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.028 0.972 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 -1.832 13.061 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.346 3.654 5 O -0.422 6.422 6 C -0.152 4.152 7 H 0.171 0.829 8 C -0.132 4.132 9 C -0.179 4.179 10 H 0.146 0.854 11 C 0.336 3.664 12 O -0.464 6.464 13 N -0.314 5.314 14 C 0.094 3.906 15 C -0.570 4.570 16 H 0.057 0.943 17 C -0.172 4.172 18 N -0.577 5.577 19 Si 0.751 3.249 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.164 1.164 23 C -0.003 4.003 24 C -0.154 4.154 25 C -0.064 4.064 26 N -0.288 5.288 27 C -0.123 4.123 28 C -0.125 4.125 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.873 -2.210 13.203 16.633 hybrid contribution 0.245 -0.075 -0.404 0.479 sum -9.627 -2.285 12.799 16.177 Atomic orbital electron populations 1.21831 0.89966 1.04533 1.03843 1.23406 0.97392 0.78822 1.02773 1.86491 1.22863 1.34138 1.83410 1.22538 0.80989 0.90607 0.71290 1.90661 1.61263 1.43545 1.46765 1.21684 0.93637 0.93513 1.06390 0.82874 1.22997 0.96138 1.04170 0.89906 1.22172 0.92319 1.00296 1.03135 0.85366 1.19511 0.82257 0.85006 0.79665 1.90585 1.60623 1.47213 1.47961 1.47813 1.05463 1.28941 1.49224 1.19685 0.90710 0.89033 0.91163 1.21427 1.30324 1.09110 0.96134 0.94315 1.25602 0.96325 1.00763 0.94519 1.70024 1.39724 1.40979 1.07009 0.86006 0.78451 0.80052 0.80368 1.19435 1.20904 1.16429 1.21386 0.98962 0.88557 0.91361 1.21783 1.00641 0.99119 0.93894 1.21976 1.00458 0.95394 0.88590 1.61966 1.19657 1.44717 1.02413 1.22430 0.97743 0.92611 0.99529 1.22429 0.90490 1.00233 0.99380 0.91160 0.91168 0.87884 0.91176 0.91157 0.86598 0.86263 0.93581 0.94251 0.92347 0.90011 0.91163 0.92781 0.91602 0.89765 0.94587 0.95328 0.90261 0.90852 0.92245 0.90083 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.29 71.98 0.74 -1.14 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.35 -9.28 10.22 -51.40 -0.53 -9.80 16 4 C 0.50 15.63 7.74 71.24 0.55 16.18 16 5 O -0.53 -19.36 16.01 21.96 0.35 -19.01 16 6 C -0.13 -4.15 5.81 -11.54 -0.07 -4.22 16 7 H 0.15 4.53 7.67 -2.39 -0.02 4.51 16 8 C -0.09 -3.08 9.94 30.59 0.30 -2.78 16 9 C -0.16 -5.84 4.80 -11.54 -0.06 -5.90 16 10 H 0.13 4.99 5.97 -2.39 -0.01 4.98 16 11 C 0.55 21.99 7.46 87.66 0.65 22.65 16 12 O -0.58 -24.56 15.84 -3.05 -0.05 -24.60 16 13 N -0.59 -23.59 2.46 -826.15 -2.03 -25.62 16 14 C 0.22 9.40 4.06 85.63 0.35 9.74 16 15 C -0.53 -27.86 9.94 25.60 0.25 -27.61 16 16 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 17 C 0.03 1.47 5.47 84.65 0.46 1.93 16 18 N -0.94 -54.97 13.96 21.45 0.30 -54.67 16 19 Si 0.93 40.77 27.47 68.60 1.88 42.65 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 23 C 0.12 4.20 5.41 86.38 0.47 4.66 16 24 C -0.12 -3.46 5.46 30.59 0.17 -3.30 16 25 C 0.06 1.61 4.96 86.30 0.43 2.04 16 26 N -0.56 -13.18 5.02 -948.83 -4.76 -17.94 16 27 C 0.02 0.44 9.57 127.69 1.22 1.66 16 28 C 0.02 0.49 9.32 127.69 1.19 1.68 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.07 1.41 8.13 -2.38 -0.02 1.39 16 34 H 0.12 3.63 8.14 -2.38 -0.02 3.61 16 35 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.05 1.93 7.13 -2.39 -0.02 1.92 16 37 H 0.04 1.68 5.42 -2.39 -0.01 1.67 16 38 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 39 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 40 H 0.07 2.49 7.42 -2.39 -0.02 2.48 16 41 H 0.05 1.74 6.55 -2.39 -0.02 1.72 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 44 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 45 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 47 H 0.07 1.24 8.12 -2.38 -0.02 1.22 16 48 H 0.06 1.42 6.47 -2.39 -0.02 1.41 16 49 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 50 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -66.58 411.16 3.13 -63.45 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.85 Total: 28.49 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.11 Total: 17.05 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -6.49 Total: -98.23 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.22 Total: -53.41 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.88 Total: 42.65 kcal Total: -66.58 3.13 -63.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930706707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.696 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds