Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47240 * 2 1 4 4 C 1.34234 * 117.00138 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99918 * 359.97438 * 4 3 2 6 6 C 1.51340 * 119.99919 * 180.02562 * 4 3 2 7 7 H 1.10225 * 107.39737 * 359.96160 * 6 4 3 8 8 C 1.52103 * 109.15905 * 242.59399 * 6 4 3 9 9 H 1.10961 * 107.41175 * 75.66085 * 8 6 4 10 10 C 1.52683 * 111.82008 * 318.58064 * 8 6 4 11 11 C 1.52362 * 112.20301 * 193.29580 * 8 6 4 12 12 C 1.52807 * 110.71358 * 50.64742 * 11 8 6 13 13 H 1.08775 * 110.13190 * 62.89127 * 12 11 8 14 14 C 1.53411 * 109.02836 * 182.01930 * 12 11 8 15 15 N 1.46410 * 109.30093 * 301.18819 * 12 11 8 16 16 C 1.46908 * 111.24218 * 188.00687 * 15 12 11 17 17 C 1.50697 * 109.47140 * 167.08643 * 16 15 12 18 18 O 1.21288 * 120.00257 * 353.92200 * 17 16 15 19 19 N 1.34780 * 119.99899 * 173.91757 * 17 16 15 20 20 C 1.37097 * 119.99886 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00376 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99544 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47424 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.46978 * 239.99774 * 24 22 20 27 27 H 1.48502 * 109.46821 * 120.00165 * 24 22 20 28 28 C 1.46037 * 112.98057 * 61.77740 * 15 12 11 29 29 H 1.11073 * 106.90479 * 187.65090 * 28 15 12 30 30 C 1.52554 * 111.26305 * 71.33589 * 28 15 12 31 31 H 1.09000 * 109.46826 * 299.99129 * 1 2 3 32 32 H 1.08994 * 109.47696 * 59.99331 * 1 2 3 33 33 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 34 34 H 1.09012 * 109.46838 * 240.00466 * 2 1 3 35 35 H 1.08994 * 109.47696 * 120.00669 * 2 1 3 36 36 H 1.08991 * 109.47207 * 59.99970 * 10 8 6 37 37 H 1.08994 * 109.46890 * 179.97438 * 10 8 6 38 38 H 1.09001 * 109.47188 * 299.99807 * 10 8 6 39 39 H 1.09346 * 109.55968 * 171.15393 * 11 8 6 40 40 H 1.09334 * 109.57051 * 290.11327 * 11 8 6 41 41 H 1.09000 * 109.47040 * 186.83591 * 14 12 11 42 42 H 1.09008 * 109.46819 * 306.82987 * 14 12 11 43 43 H 1.08998 * 109.47325 * 66.83144 * 14 12 11 44 44 H 1.09005 * 109.46884 * 47.08576 * 16 15 12 45 45 H 1.08994 * 109.46823 * 287.09100 * 16 15 12 46 46 H 0.97002 * 119.99486 * 0.02562 * 19 17 16 47 47 H 0.97009 * 120.00457 * 0.02562 * 23 22 20 48 48 H 1.09005 * 109.46922 * 54.07739 * 30 28 15 49 49 H 1.09007 * 109.46884 * 174.07558 * 30 28 15 50 50 H 1.08996 * 109.47529 * 294.07577 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9232 2.9433 0.0000 7 1 3.0772 3.6499 0.0001 8 6 4.7245 3.1526 -1.2758 9 1 3.9996 3.3026 -2.1023 10 6 5.5574 1.9232 -1.6309 11 6 5.5982 4.3990 -1.2090 12 6 6.4309 4.4073 0.0723 13 1 7.1119 3.5592 0.0817 14 6 7.2559 5.6996 0.1242 15 7 5.5367 4.3630 1.2308 16 6 6.2785 4.5597 2.4835 17 6 5.3081 4.8235 3.6058 18 8 4.1262 4.9551 3.3673 19 7 5.7535 4.9131 4.8747 20 6 4.8706 5.1526 5.8959 21 1 3.8183 5.2698 5.6835 22 6 5.3298 5.2444 7.2041 23 7 6.6102 5.1012 7.4626 24 14 4.1269 5.5714 8.5953 25 1 2.7536 5.6933 8.0439 26 1 4.4974 6.8342 9.2835 27 1 4.1737 4.4473 9.5646 28 6 4.7227 3.1515 1.2768 29 1 3.9922 3.2843 2.1029 30 6 5.5676 1.9302 1.6259 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 4.8982 1.0677 -1.7776 37 1 6.1139 2.1141 -2.5484 38 1 6.2544 1.7101 -0.8204 39 1 6.2676 4.4236 -2.0732 40 1 4.9663 5.2909 -1.2335 41 1 7.9415 5.6592 0.9706 42 1 7.8249 5.8048 -0.7996 43 1 6.5876 6.5531 0.2385 44 1 6.9515 5.4107 2.3774 45 1 6.8579 3.6640 2.7070 46 1 6.6988 4.8082 5.0654 47 1 7.2350 4.9318 6.7401 48 1 6.1124 2.1178 2.5512 49 1 4.9183 1.0643 1.7556 50 1 6.2757 1.7359 0.8203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934161547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -116.468491 kcal Electronic energy + Delta-G solvation = -30229.475713 eV Core-core repulsion = 26257.000620 eV Total energy + Delta-G solvation = -3972.475092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22502 -39.51940 -37.94334 -36.66311 -34.71224 -34.05994 -33.30052 -31.84556 -31.06891 -29.29582 -27.94808 -27.34660 -26.09819 -24.04848 -23.68868 -22.22044 -21.55483 -20.81863 -19.46670 -18.20859 -17.79223 -17.65741 -16.90983 -16.33587 -16.17557 -15.65588 -15.49324 -15.04476 -14.60879 -14.15228 -14.00471 -13.70674 -13.65156 -13.44876 -13.30869 -12.95896 -12.90479 -12.68196 -12.45857 -12.39922 -12.06924 -11.92959 -11.79247 -11.73105 -11.58286 -11.40749 -11.30823 -11.14405 -10.96858 -10.84297 -10.75154 -10.39738 -10.28783 -10.21371 -10.00329 -9.82866 -9.80366 -9.43422 -8.43249 -7.99796 -7.77060 -6.72065 -3.84937 2.18775 2.59446 3.33396 3.36043 3.55203 3.88198 3.92961 4.31537 4.50545 4.58088 4.67833 4.76063 4.81611 4.89689 4.96969 5.08533 5.10333 5.11806 5.25462 5.29792 5.32591 5.42396 5.50862 5.53794 5.59104 5.60641 5.68314 5.72010 5.72669 5.79440 5.80535 5.91379 5.96262 5.97072 6.00299 6.07762 6.10200 6.16576 6.24269 6.33916 6.39145 6.50724 6.62088 7.27514 7.48431 7.79234 7.85713 8.11923 8.64395 8.84777 9.51797 9.93145 10.71583 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.003894 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.436213 B = 7188.305289 C = 8961.531798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.468 3.532 5 O -0.497 6.497 6 C -0.055 4.055 7 H 0.104 0.896 8 C -0.077 4.077 9 H 0.067 0.933 10 C -0.154 4.154 11 C -0.097 4.097 12 C 0.082 3.918 13 H 0.042 0.958 14 C -0.151 4.151 15 N -0.503 5.503 16 C 0.041 3.959 17 C 0.447 3.553 18 O -0.569 6.569 19 N -0.578 5.578 20 C -0.380 4.380 21 H 0.100 0.900 22 C -0.010 4.010 23 N -0.904 5.904 24 Si 1.095 2.905 25 H -0.284 1.284 26 H -0.284 1.284 27 H -0.285 1.285 28 C 0.092 3.908 29 H 0.109 0.891 30 C -0.190 4.190 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.374 0.626 47 H 0.261 0.739 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -6.600 -18.611 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.311 3.689 5 O -0.385 6.385 6 C -0.075 4.075 7 H 0.122 0.878 8 C -0.096 4.096 9 H 0.086 0.914 10 C -0.211 4.211 11 C -0.135 4.135 12 C -0.027 4.027 13 H 0.060 0.940 14 C -0.209 4.209 15 N -0.228 5.228 16 C -0.090 4.090 17 C 0.233 3.767 18 O -0.453 6.453 19 N -0.216 5.216 20 C -0.509 4.509 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.543 5.543 24 Si 0.921 3.079 25 H -0.209 1.209 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.016 4.016 29 H 0.127 0.873 30 C -0.249 4.249 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.207 0.793 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.671 -6.223 -17.165 18.624 hybrid contribution 1.318 -1.167 -1.435 2.272 sum -2.353 -7.390 -18.600 20.153 Atomic orbital electron populations 1.21804 0.92695 1.02813 1.03692 1.22999 0.95417 0.80516 1.02392 1.86564 1.24841 1.32102 1.83795 1.23873 0.80254 0.92732 0.72038 1.90607 1.59999 1.43511 1.44362 1.20794 0.99338 0.90507 0.96830 0.87803 1.20780 0.97515 0.96439 0.94855 0.91442 1.22116 1.00674 0.97150 1.01172 1.21460 0.98189 0.97227 0.96645 1.21448 0.92992 0.97476 0.90741 0.94019 1.22065 0.99595 0.97831 1.01378 1.60619 1.24784 1.36261 1.01096 1.22000 0.95834 1.01543 0.89606 1.19707 0.89397 0.84445 0.83153 1.90486 1.17124 1.54583 1.83072 1.41960 1.09569 1.64196 1.05911 1.20591 0.93169 1.49686 0.87465 0.88261 1.26468 0.99708 0.96029 0.99022 1.70838 1.02081 1.46197 1.35211 0.83066 0.73733 0.77004 0.74062 1.20934 1.21039 1.21096 1.21221 0.96337 0.87995 0.96087 0.87347 1.22636 1.01641 0.99193 1.01412 0.91225 0.91546 0.90385 0.91476 0.91233 0.91796 0.93049 0.91594 0.91138 0.90646 0.92465 0.92331 0.91351 0.88585 0.93080 0.79281 0.92732 0.92480 0.91154 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.36 -4.87 10.19 -39.27 -0.40 -5.27 16 4 C 0.47 6.75 5.83 36.32 0.21 6.97 16 5 O -0.50 -7.62 10.87 -18.75 -0.20 -7.83 16 6 C -0.05 -0.78 2.43 -92.38 -0.22 -1.00 16 7 H 0.10 1.50 8.20 -51.23 -0.42 1.08 16 8 C -0.08 -0.90 2.35 -91.57 -0.22 -1.11 16 9 H 0.07 0.70 8.28 -50.80 -0.42 0.28 16 10 C -0.15 -1.78 7.70 36.99 0.28 -1.49 16 11 C -0.10 -1.08 4.77 -27.16 -0.13 -1.21 16 12 C 0.08 1.05 2.27 -67.87 -0.15 0.89 16 13 H 0.04 0.54 6.55 -52.06 -0.34 0.20 16 14 C -0.15 -1.73 8.47 37.37 0.32 -1.41 16 15 N -0.50 -8.20 4.00 -221.07 -0.88 -9.08 16 16 C 0.04 0.73 4.91 -4.97 -0.02 0.70 16 17 C 0.45 10.48 7.39 -10.99 -0.08 10.40 16 18 O -0.57 -15.25 14.08 5.55 0.08 -15.17 16 19 N -0.58 -14.53 5.28 -10.96 -0.06 -14.59 16 20 C -0.38 -10.67 9.68 -14.93 -0.14 -10.82 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 23 N -0.90 -25.44 13.68 55.50 0.76 -24.68 16 24 Si 1.09 24.55 29.92 -169.99 -5.09 19.46 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.09 1.53 1.90 -68.88 -0.13 1.40 16 29 H 0.11 2.26 5.98 -50.73 -0.30 1.95 16 30 C -0.19 -3.07 7.37 36.93 0.27 -2.80 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 36 H 0.06 0.80 5.93 -51.93 -0.31 0.49 16 37 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.07 0.84 4.72 -51.93 -0.25 0.59 16 39 H 0.07 0.64 8.09 -51.73 -0.42 0.22 16 40 H 0.07 0.86 8.17 -51.74 -0.42 0.44 16 41 H 0.06 0.65 6.49 -51.93 -0.34 0.32 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.54 5.64 -51.93 -0.29 1.25 16 45 H 0.05 0.86 5.94 -51.93 -0.31 0.55 16 46 H 0.37 8.75 6.73 -40.82 -0.27 8.48 16 47 H 0.26 7.08 6.78 -40.82 -0.28 6.80 16 48 H 0.06 0.97 6.07 -51.93 -0.32 0.65 16 49 H 0.07 1.19 5.86 -51.93 -0.30 0.88 16 50 H 0.06 0.91 4.54 -51.93 -0.24 0.67 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.33 372.56 -7.46 -39.79 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.77 Total: 11.59 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 0.50 Total: 0.16 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.18 Total: -48.35 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.53 Total: -28.26 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.33 -7.46 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.682 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds