Wall clock time and date at job start Fri Apr 10 2020 18:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47240 * 2 1 4 4 C 1.34234 * 117.00138 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99918 * 359.97438 * 4 3 2 6 6 C 1.51340 * 119.99919 * 180.02562 * 4 3 2 7 7 H 1.10225 * 107.39737 * 359.96160 * 6 4 3 8 8 C 1.52103 * 109.15905 * 242.59399 * 6 4 3 9 9 H 1.10961 * 107.41175 * 75.66085 * 8 6 4 10 10 C 1.52683 * 111.82008 * 318.58064 * 8 6 4 11 11 C 1.52362 * 112.20301 * 193.29580 * 8 6 4 12 12 C 1.52807 * 110.71358 * 50.64742 * 11 8 6 13 13 H 1.08775 * 110.13190 * 62.89127 * 12 11 8 14 14 C 1.53411 * 109.02836 * 182.01930 * 12 11 8 15 15 N 1.46410 * 109.30093 * 301.18819 * 12 11 8 16 16 C 1.46908 * 111.24218 * 188.00687 * 15 12 11 17 17 C 1.50697 * 109.47140 * 167.08643 * 16 15 12 18 18 O 1.21288 * 120.00257 * 353.92200 * 17 16 15 19 19 N 1.34780 * 119.99899 * 173.91757 * 17 16 15 20 20 C 1.37097 * 119.99886 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00376 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99544 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47424 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.46978 * 239.99774 * 24 22 20 27 27 H 1.48502 * 109.46821 * 120.00165 * 24 22 20 28 28 C 1.46037 * 112.98057 * 61.77740 * 15 12 11 29 29 H 1.11073 * 106.90479 * 187.65090 * 28 15 12 30 30 C 1.52554 * 111.26305 * 71.33589 * 28 15 12 31 31 H 1.09000 * 109.46826 * 299.99129 * 1 2 3 32 32 H 1.08994 * 109.47696 * 59.99331 * 1 2 3 33 33 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 34 34 H 1.09012 * 109.46838 * 240.00466 * 2 1 3 35 35 H 1.08994 * 109.47696 * 120.00669 * 2 1 3 36 36 H 1.08991 * 109.47207 * 59.99970 * 10 8 6 37 37 H 1.08994 * 109.46890 * 179.97438 * 10 8 6 38 38 H 1.09001 * 109.47188 * 299.99807 * 10 8 6 39 39 H 1.09346 * 109.55968 * 171.15393 * 11 8 6 40 40 H 1.09334 * 109.57051 * 290.11327 * 11 8 6 41 41 H 1.09000 * 109.47040 * 186.83591 * 14 12 11 42 42 H 1.09008 * 109.46819 * 306.82987 * 14 12 11 43 43 H 1.08998 * 109.47325 * 66.83144 * 14 12 11 44 44 H 1.09005 * 109.46884 * 47.08576 * 16 15 12 45 45 H 1.08994 * 109.46823 * 287.09100 * 16 15 12 46 46 H 0.97002 * 119.99486 * 0.02562 * 19 17 16 47 47 H 0.97009 * 120.00457 * 0.02562 * 23 22 20 48 48 H 1.09005 * 109.46922 * 54.07739 * 30 28 15 49 49 H 1.09007 * 109.46884 * 174.07558 * 30 28 15 50 50 H 1.08996 * 109.47529 * 294.07577 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9232 2.9433 0.0000 7 1 3.0772 3.6499 0.0001 8 6 4.7245 3.1526 -1.2758 9 1 3.9996 3.3026 -2.1023 10 6 5.5574 1.9232 -1.6309 11 6 5.5982 4.3990 -1.2090 12 6 6.4309 4.4073 0.0723 13 1 7.1119 3.5592 0.0817 14 6 7.2559 5.6996 0.1242 15 7 5.5367 4.3630 1.2308 16 6 6.2785 4.5597 2.4835 17 6 5.3081 4.8235 3.6058 18 8 4.1262 4.9551 3.3673 19 7 5.7535 4.9131 4.8747 20 6 4.8706 5.1526 5.8959 21 1 3.8183 5.2698 5.6835 22 6 5.3298 5.2444 7.2041 23 7 6.6102 5.1012 7.4626 24 14 4.1269 5.5714 8.5953 25 1 2.7536 5.6933 8.0439 26 1 4.4974 6.8342 9.2835 27 1 4.1737 4.4473 9.5646 28 6 4.7227 3.1515 1.2768 29 1 3.9922 3.2843 2.1029 30 6 5.5676 1.9302 1.6259 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 4.8982 1.0677 -1.7776 37 1 6.1139 2.1141 -2.5484 38 1 6.2544 1.7101 -0.8204 39 1 6.2676 4.4236 -2.0732 40 1 4.9663 5.2909 -1.2335 41 1 7.9415 5.6592 0.9706 42 1 7.8249 5.8048 -0.7996 43 1 6.5876 6.5531 0.2385 44 1 6.9515 5.4107 2.3774 45 1 6.8579 3.6640 2.7070 46 1 6.6988 4.8082 5.0654 47 1 7.2350 4.9318 6.7401 48 1 6.1124 2.1178 2.5512 49 1 4.9183 1.0643 1.7556 50 1 6.2757 1.7359 0.8203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934161547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:47 Heat of formation + Delta-G solvation = -137.507204 kcal Electronic energy + Delta-G solvation = -30230.388020 eV Core-core repulsion = 26257.000620 eV Total energy + Delta-G solvation = -3973.387399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.37468 -40.85927 -39.62103 -37.78989 -36.42119 -35.55200 -34.45318 -33.11987 -32.66412 -30.56635 -29.12395 -28.50103 -27.43501 -25.91148 -24.61058 -23.29166 -22.72746 -22.01970 -21.15205 -19.95613 -19.24860 -18.76342 -18.15218 -17.84447 -17.49290 -16.83270 -16.71780 -16.60251 -15.91186 -15.59470 -15.48618 -15.29628 -15.06014 -14.59194 -14.31235 -14.27849 -13.87274 -13.79776 -13.57694 -13.43180 -13.33539 -13.23368 -13.01064 -12.93605 -12.75624 -12.64735 -12.55627 -12.42935 -12.34048 -11.96807 -11.91629 -11.88585 -11.79230 -11.56369 -11.42643 -11.31627 -11.10241 -10.88785 -10.27854 -10.06920 -9.13695 -8.91419 -6.04660 1.04324 1.52708 1.53061 1.57854 1.80761 2.02916 2.38769 2.67694 3.16998 3.21439 3.44478 3.58383 3.65595 3.85570 3.95238 4.00124 4.02314 4.06277 4.11274 4.19173 4.26771 4.28497 4.30203 4.39700 4.48502 4.49753 4.50816 4.71252 4.77364 4.80661 4.86091 4.87370 4.92948 4.96397 5.00911 5.03990 5.11702 5.13025 5.14039 5.30071 5.40448 5.45355 5.53812 5.62181 5.95270 6.01247 6.28845 6.60115 6.67984 6.77924 7.46590 7.96266 8.56444 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.003894 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.436213 B = 7188.305289 C = 8961.531798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.367 6.367 4 C 0.468 3.532 5 O -0.509 6.509 6 C -0.053 4.053 7 H 0.095 0.905 8 C -0.075 4.075 9 H 0.087 0.913 10 C -0.147 4.147 11 C -0.094 4.094 12 C 0.078 3.922 13 H 0.048 0.952 14 C -0.149 4.149 15 N -0.516 5.516 16 C 0.053 3.947 17 C 0.447 3.553 18 O -0.606 6.606 19 N -0.590 5.590 20 C -0.406 4.406 21 H 0.072 0.928 22 C -0.042 4.042 23 N -0.919 5.919 24 Si 1.136 2.864 25 H -0.280 1.280 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.102 3.898 29 H 0.056 0.944 30 C -0.179 4.179 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.065 0.935 46 H 0.383 0.617 47 H 0.259 0.741 48 H 0.042 0.958 49 H 0.057 0.943 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -6.675 -20.624 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.285 6.285 4 C 0.311 3.689 5 O -0.397 6.397 6 C -0.073 4.073 7 H 0.113 0.887 8 C -0.094 4.094 9 H 0.105 0.895 10 C -0.204 4.204 11 C -0.131 4.131 12 C -0.029 4.029 13 H 0.066 0.934 14 C -0.206 4.206 15 N -0.240 5.240 16 C -0.077 4.077 17 C 0.235 3.765 18 O -0.490 6.490 19 N -0.229 5.229 20 C -0.535 4.535 21 H 0.090 0.910 22 C -0.240 4.240 23 N -0.559 5.559 24 Si 0.957 3.043 25 H -0.206 1.206 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.007 4.007 29 H 0.074 0.926 30 C -0.237 4.237 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.083 0.917 46 H 0.216 0.784 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.863 -6.303 -19.206 20.416 hybrid contribution 1.031 -1.187 -0.895 1.809 sum -1.833 -7.491 -20.102 21.530 Atomic orbital electron populations 1.21832 0.90617 1.04433 1.03556 1.23295 0.97094 0.79176 1.02534 1.86559 1.24415 1.33955 1.83523 1.23909 0.80534 0.92685 0.71776 1.90593 1.60278 1.43825 1.45015 1.20780 0.99167 0.90277 0.97100 0.88695 1.20829 0.97915 0.97024 0.93644 0.89463 1.22034 1.00164 0.96404 1.01775 1.21499 0.98338 0.96568 0.96712 1.21653 0.92942 0.98582 0.89756 0.93364 1.22061 0.99275 0.96305 1.02954 1.60594 1.25823 1.36079 1.01529 1.21878 0.94468 1.03047 0.88352 1.20774 0.89881 0.82088 0.83798 1.90469 1.19282 1.55497 1.83799 1.42011 1.09638 1.65090 1.06206 1.20541 0.92612 1.51382 0.88965 0.91019 1.27764 1.00532 0.94897 1.00835 1.70907 1.02518 1.47138 1.35307 0.82574 0.72077 0.77775 0.71908 1.20573 1.19568 1.19831 1.20979 0.95543 0.88377 0.95811 0.92599 1.22516 1.01450 0.98465 1.01278 0.92152 0.90842 0.87861 0.90365 0.92067 0.93065 0.90478 0.92977 0.87824 0.90950 0.92604 0.89348 0.92579 0.86232 0.91745 0.78366 0.93001 0.93876 0.92392 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.11 6.19 71.98 0.45 1.56 16 3 O -0.37 -10.18 10.19 -51.46 -0.52 -10.71 16 4 C 0.47 13.60 5.83 71.44 0.42 14.01 16 5 O -0.51 -15.58 10.87 21.96 0.24 -15.34 16 6 C -0.05 -1.51 2.43 -11.94 -0.03 -1.54 16 7 H 0.09 2.81 8.20 -1.73 -0.01 2.80 16 8 C -0.08 -1.59 2.35 -11.41 -0.03 -1.61 16 9 H 0.09 1.55 8.28 -1.33 -0.01 1.54 16 10 C -0.15 -2.99 7.70 71.88 0.55 -2.44 16 11 C -0.09 -1.77 4.77 30.32 0.14 -1.63 16 12 C 0.08 1.80 2.27 45.08 0.10 1.91 16 13 H 0.05 1.09 6.55 -2.51 -0.02 1.07 16 14 C -0.15 -2.95 8.47 72.12 0.61 -2.34 16 15 N -0.52 -16.58 4.00 -853.33 -3.41 -19.99 16 16 C 0.05 1.88 4.91 85.55 0.42 2.30 16 17 C 0.45 21.62 7.39 87.66 0.65 22.27 16 18 O -0.61 -33.97 14.08 -3.06 -0.04 -34.01 16 19 N -0.59 -30.58 5.28 -306.98 -1.62 -32.20 16 20 C -0.41 -23.57 9.68 84.04 0.81 -22.76 16 21 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 22 C -0.04 -2.33 5.50 84.93 0.47 -1.86 16 23 N -0.92 -51.97 13.68 21.66 0.30 -51.67 16 24 Si 1.14 49.59 29.92 68.60 2.05 51.64 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 C 0.10 3.47 1.90 44.63 0.08 3.55 16 29 H 0.06 2.48 5.98 -1.27 -0.01 2.47 16 30 C -0.18 -5.84 7.37 71.83 0.53 -5.31 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 36 H 0.05 1.18 5.93 -2.39 -0.01 1.17 16 37 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.05 1.20 4.72 -2.39 -0.01 1.19 16 39 H 0.10 1.35 8.09 -2.20 -0.02 1.34 16 40 H 0.07 1.45 8.17 -2.21 -0.02 1.43 16 41 H 0.06 1.12 6.49 -2.39 -0.02 1.10 16 42 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.12 3.69 5.64 -2.38 -0.01 3.67 16 45 H 0.06 2.13 5.94 -2.39 -0.01 2.12 16 46 H 0.38 18.31 6.73 -92.71 -0.62 17.68 16 47 H 0.26 14.20 6.78 -92.70 -0.63 13.57 16 48 H 0.04 1.49 6.07 -2.38 -0.01 1.48 16 49 H 0.06 2.02 5.86 -2.38 -0.01 2.01 16 50 H 0.08 2.27 4.54 -2.39 -0.01 2.26 16 Total: -1.00 -72.50 372.56 3.40 -69.09 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: 0.50 Total: 38.61 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.92 Total: 4.57 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -4.74 Total: -103.86 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -0.33 Total: -60.05 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -72.50 3.40 -69.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.413 kcal (2) G-P(sol) polarization free energy of solvation -72.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds