Wall clock time and date at job start Fri Apr 10 2020 18:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47202 * 2 1 4 4 C 1.34223 * 117.00199 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.50911 * 120.00160 * 180.02562 * 4 3 2 7 7 H 1.09352 * 108.84526 * 59.72548 * 6 4 3 8 8 C 1.52407 * 109.57929 * 300.00016 * 6 4 3 9 9 H 1.10880 * 107.34948 * 70.60748 * 8 6 4 10 10 C 1.52841 * 110.59382 * 314.19437 * 8 6 4 11 11 C 1.51836 * 112.42071 * 188.86332 * 8 6 4 12 12 C 1.51773 * 114.86634 * 42.21158 * 11 8 6 13 13 H 1.11082 * 107.35348 * 199.75601 * 12 11 8 14 14 C 1.52885 * 111.36874 * 83.36806 * 12 11 8 15 15 N 1.45786 * 113.20283 * 317.69759 * 12 11 8 16 16 C 1.46904 * 111.59256 * 179.21121 * 15 12 11 17 17 C 1.50707 * 109.46474 * 72.31346 * 16 15 12 18 18 O 1.21285 * 120.00433 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99724 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00146 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99670 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00137 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00244 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00245 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46867 * 90.00092 * 24 22 20 26 26 H 1.48500 * 109.46585 * 330.00331 * 24 22 20 27 27 H 1.48495 * 109.47182 * 210.00585 * 24 22 20 28 28 C 1.46333 * 113.41497 * 52.55308 * 15 12 11 29 29 H 1.08751 * 110.61643 * 59.90509 * 28 15 12 30 30 C 1.53412 * 109.13447 * 179.47892 * 28 15 12 31 31 H 1.08999 * 109.47191 * 299.99968 * 1 2 3 32 32 H 1.08995 * 109.47521 * 59.99660 * 1 2 3 33 33 H 1.09000 * 109.47550 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46779 * 240.00353 * 2 1 3 35 35 H 1.08995 * 109.47521 * 120.00340 * 2 1 3 36 36 H 1.08999 * 109.47166 * 294.14628 * 10 8 6 37 37 H 1.09001 * 109.47095 * 54.13855 * 10 8 6 38 38 H 1.08994 * 109.47294 * 174.13878 * 10 8 6 39 39 H 1.10169 * 108.77643 * 280.09685 * 11 8 6 40 40 H 1.10089 * 108.89712 * 164.60638 * 11 8 6 41 41 H 1.08992 * 109.47048 * 293.02165 * 14 12 11 42 42 H 1.09000 * 109.46575 * 53.02364 * 14 12 11 43 43 H 1.09000 * 109.46974 * 173.01890 * 14 12 11 44 44 H 1.08995 * 109.47421 * 312.31819 * 16 15 12 45 45 H 1.08993 * 109.47412 * 192.31001 * 16 15 12 46 46 H 0.97001 * 119.99608 * 0.02562 * 19 17 16 47 47 H 0.97005 * 120.00488 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.47363 * 52.21974 * 30 28 15 49 49 H 1.09007 * 109.47077 * 172.22001 * 30 28 15 50 50 H 1.08999 * 109.47153 * 292.22002 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9215 2.9394 0.0000 7 1 3.5748 3.4647 0.8943 8 6 3.4526 3.6865 -1.2429 9 1 2.3712 3.8953 -1.1149 10 6 3.5942 2.8065 -2.4845 11 6 4.1619 5.0172 -1.4206 12 6 5.6538 4.9872 -1.1438 13 1 5.9764 6.0328 -0.9525 14 6 6.4373 4.5037 -2.3644 15 7 6.0032 4.2085 0.0381 16 6 7.4549 4.1877 0.2621 17 6 7.9069 5.5394 0.7519 18 8 7.0992 6.4320 0.9002 19 7 9.2086 5.7561 1.0261 20 6 9.6198 6.9855 1.4721 21 1 8.9005 7.7803 1.6042 22 6 10.9618 7.2090 1.7543 23 7 11.3559 8.3874 2.1823 24 14 12.2058 5.8342 1.5266 25 1 12.7453 5.8789 0.1438 26 1 11.5442 4.5249 1.7577 27 1 13.3164 6.0058 2.4972 28 6 5.4476 2.8548 0.0278 29 1 5.8084 2.2994 -0.8348 30 6 5.8843 2.1223 1.3030 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 4.6499 2.6122 -2.6737 37 1 3.0746 1.8622 -2.3217 38 1 3.1591 3.3173 -3.3434 39 1 3.6933 5.7603 -0.7558 40 1 3.9973 5.3744 -2.4489 41 1 6.2052 3.4557 -2.5533 42 1 6.1596 5.0998 -3.2337 43 1 7.5055 4.6112 -2.1764 44 1 7.9634 3.9513 -0.6725 45 1 7.6965 3.4313 1.0087 46 1 9.8545 5.0421 0.9078 47 1 12.2927 8.5433 2.3797 48 1 5.6389 2.7305 2.1736 49 1 5.3641 1.1666 1.3692 50 1 6.9600 1.9491 1.2723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934161551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:55 Heat of formation + Delta-G solvation = -114.877510 kcal Electronic energy + Delta-G solvation = -29948.192217 eV Core-core repulsion = 25975.786114 eV Total energy + Delta-G solvation = -3972.406102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26231 -39.60218 -37.93940 -36.80807 -34.85591 -33.83647 -33.31565 -31.94961 -31.60775 -29.33860 -27.70353 -27.44377 -26.64514 -24.24773 -23.69181 -22.42193 -21.25093 -20.95909 -19.26774 -18.44485 -17.99887 -17.64612 -16.82714 -16.58762 -16.00301 -15.74212 -15.48436 -14.88015 -14.75618 -14.34792 -14.13081 -13.77927 -13.60547 -13.49762 -13.17016 -13.09003 -12.80902 -12.74445 -12.52054 -12.42406 -12.26469 -12.12270 -11.93574 -11.86433 -11.82237 -11.64560 -11.54401 -11.38434 -11.16639 -10.78502 -10.75669 -10.59068 -10.54720 -10.40008 -10.12596 -9.94587 -9.86454 -9.46450 -8.51606 -8.12626 -7.74954 -6.26669 -3.77578 2.06990 2.42098 3.06147 3.09744 3.17969 3.81130 3.90773 4.14186 4.34955 4.49821 4.57520 4.60167 4.66022 4.81818 4.92117 4.93129 5.04951 5.12584 5.14349 5.26354 5.29475 5.33536 5.41112 5.42661 5.55279 5.56728 5.58509 5.61489 5.62948 5.69699 5.76749 5.81980 5.87466 5.92339 5.98399 6.03329 6.06173 6.16591 6.20434 6.26361 6.32068 6.44954 6.58818 7.27445 7.51862 7.62365 7.65230 8.19898 8.66077 9.00762 9.48118 9.90559 10.86628 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.002959 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.792020 B = 9459.237562 C = 9928.727678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.473 3.527 5 O -0.505 6.505 6 C -0.064 4.064 7 H 0.117 0.883 8 C -0.076 4.076 9 H 0.077 0.923 10 C -0.154 4.154 11 C -0.098 4.098 12 C 0.082 3.918 13 H 0.104 0.896 14 C -0.189 4.189 15 N -0.511 5.511 16 C 0.037 3.963 17 C 0.457 3.543 18 O -0.557 6.557 19 N -0.595 5.595 20 C -0.301 4.301 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.884 5.884 24 Si 0.878 3.122 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.277 1.277 28 C 0.107 3.893 29 H 0.049 0.951 30 C -0.165 4.165 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.369 0.631 47 H 0.272 0.728 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.784 -17.170 -8.345 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.316 3.684 5 O -0.392 6.392 6 C -0.084 4.084 7 H 0.135 0.865 8 C -0.095 4.095 9 H 0.095 0.905 10 C -0.211 4.211 11 C -0.136 4.136 12 C -0.026 4.026 13 H 0.122 0.878 14 C -0.248 4.248 15 N -0.235 5.235 16 C -0.094 4.094 17 C 0.242 3.758 18 O -0.438 6.438 19 N -0.235 5.235 20 C -0.430 4.430 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.524 5.524 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.203 1.203 28 C -0.001 4.001 29 H 0.067 0.933 30 C -0.222 4.222 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.189 -16.482 -7.788 25.752 hybrid contribution 1.615 -1.620 -0.742 2.404 sum -16.574 -18.101 -8.530 25.983 Atomic orbital electron populations 1.21801 0.92653 1.02884 1.03606 1.23003 0.95366 0.80493 1.02495 1.86533 1.24724 1.32080 1.84038 1.23756 0.80363 0.92703 0.71531 1.90615 1.60073 1.43253 1.45299 1.21022 0.96101 0.89095 1.02153 0.86474 1.20812 1.00758 0.95229 0.92690 0.90484 1.22034 1.02387 0.98994 0.97681 1.21261 0.94369 0.95649 1.02296 1.21424 0.93905 1.00366 0.86893 0.87807 1.22572 1.01477 1.01192 0.99509 1.60126 1.11209 1.12998 1.39117 1.22044 0.87914 0.98238 1.01167 1.19689 0.82680 0.89366 0.84045 1.90525 1.52316 1.45222 1.55769 1.42223 1.06983 1.13155 1.61154 1.19408 0.94322 0.88788 1.40459 0.86306 1.25021 0.97017 0.96648 0.97551 1.69621 1.16920 1.21294 1.44589 0.86696 0.82034 0.81898 0.78919 1.19740 1.19476 1.20257 1.21068 0.91007 0.89336 0.98730 0.93279 1.22337 1.01812 1.00969 0.97122 0.91389 0.91475 0.90343 0.91395 0.91273 0.92008 0.93355 0.91887 0.90991 0.91172 0.92986 0.92061 0.92138 0.92554 0.88620 0.79835 0.91716 0.91690 0.90425 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.77 10.06 -39.24 -0.39 -4.17 16 4 C 0.47 5.66 5.02 36.11 0.18 5.84 16 5 O -0.50 -6.96 13.47 -18.75 -0.25 -7.22 16 6 C -0.06 -0.77 2.12 -92.04 -0.20 -0.96 16 7 H 0.12 1.42 8.17 -51.73 -0.42 1.00 16 8 C -0.08 -0.81 2.30 -91.60 -0.21 -1.02 16 9 H 0.08 0.74 8.28 -50.85 -0.42 0.32 16 10 C -0.15 -1.51 8.62 37.08 0.32 -1.19 16 11 C -0.10 -1.16 4.92 -27.94 -0.14 -1.30 16 12 C 0.08 1.21 2.30 -69.00 -0.16 1.05 16 13 H 0.10 1.92 6.38 -50.73 -0.32 1.60 16 14 C -0.19 -2.45 8.41 37.10 0.31 -2.14 16 15 N -0.51 -8.01 3.88 -221.27 -0.86 -8.87 16 16 C 0.04 0.63 5.09 -4.97 -0.03 0.60 16 17 C 0.46 10.28 7.54 -10.98 -0.08 10.19 16 18 O -0.56 -14.59 14.30 5.55 0.08 -14.51 16 19 N -0.60 -14.19 5.09 -10.96 -0.06 -14.25 16 20 C -0.30 -8.50 10.16 -14.94 -0.15 -8.65 16 21 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.95 13.96 55.50 0.77 -25.17 16 24 Si 0.88 19.56 27.74 -169.99 -4.71 14.85 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.11 1.44 1.45 -67.87 -0.10 1.34 16 29 H 0.05 0.68 6.31 -52.07 -0.33 0.35 16 30 C -0.17 -2.21 8.26 37.37 0.31 -1.90 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 35 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 36 H 0.06 0.66 5.03 -51.93 -0.26 0.40 16 37 H 0.05 0.49 6.63 -51.93 -0.34 0.14 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.89 8.24 -51.26 -0.42 0.47 16 40 H 0.07 0.72 7.86 -51.31 -0.40 0.32 16 41 H 0.05 0.62 4.91 -51.93 -0.25 0.37 16 42 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 43 H 0.06 0.86 6.21 -51.93 -0.32 0.53 16 44 H 0.06 0.87 5.68 -51.93 -0.30 0.57 16 45 H 0.10 1.49 5.35 -51.93 -0.28 1.21 16 46 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.04 5.43 -51.93 -0.28 0.75 16 50 H 0.06 0.77 6.37 -51.93 -0.33 0.44 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -32.48 374.76 -7.06 -39.54 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.86 Total: 11.03 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 0.58 Total: 3.12 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.14 Total: -48.29 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.57 Total: -25.89 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.48 -7.06 -39.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.337 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds