Wall clock time and date at job start Fri Apr 10 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46646 * 2 1 4 4 C 1.42902 * 114.00130 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.57336 * 29.83719 * 4 3 2 6 6 C 1.53097 * 109.52099 * 269.68499 * 4 3 2 7 7 O 1.42904 * 109.41297 * 182.48083 * 6 4 3 8 8 C 1.42898 * 114.09657 * 61.15942 * 7 6 4 9 9 C 1.53090 * 109.41673 * 298.83894 * 8 7 6 10 10 C 1.53174 * 109.52564 * 149.99934 * 4 3 2 11 11 H 1.08995 * 109.61523 * 56.97627 * 10 4 3 12 12 C 1.52996 * 109.54384 * 296.75284 * 10 4 3 13 13 C 1.50703 * 109.47152 * 175.44285 * 12 10 4 14 14 O 1.21276 * 119.99860 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99988 * 180.02562 * 13 12 10 16 16 C 1.46502 * 120.00030 * 180.02562 * 15 13 12 17 17 H 1.09004 * 112.84700 * 23.79881 * 16 15 13 18 18 C 1.53778 * 113.61518 * 154.99538 * 16 15 13 19 19 C 1.53791 * 87.07696 * 89.20105 * 18 16 15 20 20 H 1.08998 * 113.61434 * 140.06849 * 19 18 16 21 21 N 1.46505 * 113.61214 * 270.88217 * 19 18 16 22 22 C 1.36931 * 119.99788 * 203.47262 * 21 19 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 C 1.53775 * 87.17452 * 25.47445 * 19 18 16 31 31 H 1.08993 * 109.47226 * 60.00384 * 1 2 3 32 32 H 1.09002 * 109.46666 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47368 * 299.99440 * 1 2 3 34 34 H 1.08998 * 109.47368 * 240.00560 * 2 1 3 35 35 H 1.09002 * 109.47269 * 119.99890 * 2 1 3 36 36 H 1.09007 * 109.48125 * 62.50366 * 6 4 3 37 37 H 1.08994 * 109.47948 * 302.46661 * 6 4 3 38 38 H 1.09000 * 109.47992 * 178.85435 * 8 7 6 39 39 H 1.08997 * 109.48849 * 58.83076 * 8 7 6 40 40 H 1.08997 * 109.52291 * 297.70354 * 9 8 7 41 41 H 1.09002 * 109.52155 * 177.50990 * 9 8 7 42 42 H 1.09006 * 109.47080 * 55.44736 * 12 10 4 43 43 H 1.08997 * 109.47174 * 295.44583 * 12 10 4 44 44 H 0.97000 * 119.99985 * 359.97438 * 15 13 12 45 45 H 1.08997 * 113.61545 * 334.65216 * 18 16 15 46 46 H 1.08997 * 113.69099 * 203.75463 * 18 16 15 47 47 H 0.97000 * 119.99792 * 23.47056 * 21 19 18 48 48 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 49 49 H 1.08997 * 113.61768 * 89.07373 * 30 19 18 50 50 H 1.09002 * 113.61292 * 219.98237 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.8650 0.6011 -0.5119 6 6 3.9407 1.5084 1.4422 7 8 5.3595 1.6794 1.4390 8 6 5.7999 2.8892 0.8190 9 6 5.3647 2.8966 -0.6487 10 6 3.8420 2.7472 -0.7224 11 1 3.3679 3.6033 -0.2425 12 6 3.4051 2.6745 -2.1869 13 6 3.7097 3.9842 -2.8675 14 8 4.2258 4.8865 -2.2429 15 7 3.4085 4.1525 -4.1704 16 6 3.7051 5.4255 -4.8322 17 1 4.5021 5.9828 -4.3399 18 6 3.8899 5.3003 -6.3537 19 6 2.3743 5.5304 -6.4774 20 1 2.0968 6.1712 -7.3143 21 7 1.5868 4.2963 -6.4204 22 6 0.3365 4.2557 -6.9772 23 1 -0.0691 5.1333 -7.4586 24 6 -0.4073 3.0846 -6.9282 25 7 0.0871 2.0150 -6.3420 26 14 -2.1100 3.0269 -7.6945 27 1 -2.4319 4.3507 -8.2856 28 1 -2.1399 1.9896 -8.7566 29 1 -3.1119 2.6950 -6.6500 30 6 2.4542 6.2728 -5.1331 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.6881 0.5766 1.9483 37 1 3.4750 2.3439 1.9646 38 1 6.8866 2.9523 0.8762 39 1 5.3587 3.7430 1.3333 40 1 5.8380 2.0665 -1.1732 41 1 5.6611 3.8378 -1.1118 42 1 2.3338 2.4795 -2.2372 43 1 3.9448 1.8707 -2.6876 44 1 2.9961 3.4307 -4.6700 45 1 4.2086 4.3087 -6.6747 46 1 4.4897 6.0994 -6.7892 47 1 1.9512 3.5080 -5.9883 48 1 -0.4328 1.1968 -6.3074 49 1 2.6623 7.3379 -5.2341 50 1 1.6148 6.0656 -4.4693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022448487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:14 Heat of formation + Delta-G solvation = -124.076902 kcal Electronic energy + Delta-G solvation = -29244.172729 eV Core-core repulsion = 25271.367711 eV Total energy + Delta-G solvation = -3972.805018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52244 -40.67545 -39.28365 -38.43954 -35.55502 -35.23929 -34.10276 -32.46223 -31.87310 -30.80817 -29.67487 -26.56635 -26.35262 -25.26823 -24.45867 -23.70389 -23.47939 -21.55760 -21.08872 -20.33133 -19.26343 -18.33981 -17.87485 -17.40739 -17.03167 -16.75864 -16.58992 -16.53993 -16.16172 -15.89446 -15.72686 -15.50532 -15.07000 -14.87147 -14.51955 -14.39394 -13.93493 -13.62411 -13.60128 -13.46095 -13.37631 -13.20361 -13.15176 -12.84404 -12.72524 -12.53771 -12.40309 -12.16122 -12.11440 -11.98677 -11.78633 -11.72306 -11.68074 -11.41876 -11.14491 -10.97746 -10.84611 -10.77340 -10.15378 -9.89074 -9.01504 -7.96687 -5.23853 1.47483 1.48974 1.57604 1.63026 2.21455 2.49176 2.55799 3.02631 3.36770 3.52671 3.59068 3.67638 3.76648 3.86448 3.93660 3.99572 4.07505 4.16655 4.17838 4.28915 4.31542 4.31881 4.38253 4.41000 4.48994 4.50765 4.68558 4.71747 4.77694 4.79602 4.84970 4.87903 4.89587 4.97309 5.02649 5.03823 5.07129 5.18480 5.22758 5.23497 5.28898 5.38978 5.52934 5.75513 6.02675 6.27580 6.34183 6.56585 7.24198 7.34133 8.07076 8.30191 9.26493 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.003718 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.083969 B = 7528.840535 C = 9771.378750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.396 6.396 4 C 0.065 3.935 5 H 0.079 0.921 6 C 0.045 3.955 7 O -0.388 6.388 8 C 0.060 3.940 9 C -0.147 4.147 10 C -0.063 4.063 11 H 0.065 0.935 12 C -0.129 4.129 13 C 0.516 3.484 14 O -0.573 6.573 15 N -0.704 5.704 16 C 0.122 3.878 17 H 0.098 0.902 18 C -0.144 4.144 19 C 0.146 3.854 20 H 0.067 0.933 21 N -0.716 5.716 22 C -0.245 4.245 23 H 0.075 0.925 24 C -0.066 4.066 25 N -0.962 5.962 26 Si 0.967 3.033 27 H -0.270 1.270 28 H -0.292 1.292 29 H -0.297 1.297 30 C -0.179 4.179 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.403 0.597 45 H 0.066 0.934 46 H 0.126 0.874 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.105 0.895 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.302 -2.001 12.610 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.316 6.316 4 C 0.007 3.993 5 H 0.097 0.903 6 C -0.032 4.032 7 O -0.307 6.307 8 C -0.017 4.017 9 C -0.184 4.184 10 C -0.082 4.082 11 H 0.083 0.917 12 C -0.169 4.169 13 C 0.305 3.695 14 O -0.453 6.453 15 N -0.356 5.356 16 C 0.017 3.983 17 H 0.116 0.884 18 C -0.183 4.183 19 C 0.035 3.965 20 H 0.085 0.915 21 N -0.357 5.357 22 C -0.376 4.376 23 H 0.093 0.907 24 C -0.259 4.259 25 N -0.612 5.612 26 Si 0.797 3.203 27 H -0.194 1.194 28 H -0.220 1.220 29 H -0.224 1.224 30 C -0.221 4.221 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.240 0.760 45 H 0.084 0.916 46 H 0.144 0.856 47 H 0.208 0.792 48 H 0.061 0.939 49 H 0.123 0.877 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.497 -1.303 13.001 16.760 hybrid contribution -1.517 -0.715 -0.708 1.821 sum 8.980 -2.019 12.293 15.357 Atomic orbital electron populations 1.21769 0.93599 1.03274 1.02287 1.22714 0.95863 0.82885 1.01102 1.87949 1.20470 1.28045 1.95089 1.22760 0.81592 0.98200 0.96755 0.90350 1.23044 0.81318 1.03197 0.95627 1.87912 1.21437 1.42013 1.79363 1.22723 1.01138 0.86422 0.91388 1.22326 0.93631 1.04073 0.98380 1.20958 0.96734 0.97158 0.93357 0.91686 1.21638 1.03991 0.95034 0.96204 1.20954 0.76840 0.90113 0.81634 1.90577 1.45256 1.44714 1.64766 1.46018 1.62035 1.16599 1.10948 1.21870 0.97700 0.85137 0.93616 0.88397 1.23737 0.97286 1.03417 0.93862 1.21487 0.91222 0.88319 0.95432 0.91470 1.42345 1.15877 1.09877 1.67568 1.19656 0.93029 0.96700 1.28252 0.90726 1.25420 1.02095 0.95893 1.02494 1.69748 1.38949 1.02159 1.50357 0.85170 0.80281 0.77518 0.77346 1.19413 1.21954 1.22404 1.24254 0.97420 1.00133 1.00284 0.93708 0.89099 0.91861 0.92944 0.91374 0.87203 0.92666 0.86739 0.93001 0.90589 0.89582 0.89166 0.87436 0.76002 0.91575 0.85592 0.79205 0.93909 0.87712 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 10.28 71.98 0.74 -2.35 16 2 C 0.05 1.03 6.47 71.98 0.47 1.49 16 3 O -0.40 -10.17 9.39 -148.98 -1.40 -11.57 16 4 C 0.07 1.49 2.21 30.68 0.07 1.55 16 5 H 0.08 1.65 7.79 -2.39 -0.02 1.63 16 6 C 0.05 0.93 6.47 72.01 0.47 1.39 16 7 O -0.39 -8.57 10.77 -148.98 -1.60 -10.17 16 8 C 0.06 1.20 6.84 72.01 0.49 1.70 16 9 C -0.15 -3.37 5.12 30.68 0.16 -3.21 16 10 C -0.06 -1.64 1.64 -10.68 -0.02 -1.66 16 11 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 12 C -0.13 -3.70 5.12 29.85 0.15 -3.54 16 13 C 0.52 17.33 7.57 87.66 0.66 17.99 16 14 O -0.57 -21.16 13.58 -3.02 -0.04 -21.20 16 15 N -0.70 -24.12 5.14 -439.59 -2.26 -26.38 16 16 C 0.12 3.92 4.33 45.61 0.20 4.12 16 17 H 0.10 3.03 7.46 -2.38 -0.02 3.01 16 18 C -0.14 -4.23 7.58 31.12 0.24 -3.99 16 19 C 0.15 5.42 4.55 45.52 0.21 5.63 16 20 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 21 N -0.72 -33.84 5.17 -320.43 -1.66 -35.50 16 22 C -0.24 -13.05 9.97 84.04 0.84 -12.21 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 24 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 25 N -0.96 -55.30 13.06 21.65 0.28 -55.02 16 26 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 C -0.18 -6.19 7.70 31.21 0.24 -5.95 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 36 H 0.11 1.83 7.96 -2.38 -0.02 1.82 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 2.29 6.03 -2.39 -0.01 2.27 16 42 H 0.09 2.90 7.66 -2.38 -0.02 2.88 16 43 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.40 14.80 6.16 -92.71 -0.57 14.22 16 45 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.37 18.19 5.37 -92.71 -0.50 17.70 16 48 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 49 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 50 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.47 393.71 0.59 -63.88 By element: Atomic # 1 Polarization: 51.43 SS G_CDS: -0.14 Total: 51.29 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.37 Total: -2.19 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -3.63 Total: -116.90 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -3.04 Total: -42.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.47 0.59 -63.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022448487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.195 kcal (2) G-P(sol) polarization free energy of solvation -64.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds