Wall clock time and date at job start Fri Apr 10 2020 18:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46872 * 2 1 4 4 C 1.42897 * 114.00257 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.57207 * 29.84587 * 4 3 2 6 6 C 1.53095 * 109.60155 * 269.72854 * 4 3 2 7 7 O 1.42904 * 109.49098 * 182.57683 * 6 4 3 8 8 C 1.42902 * 114.09899 * 61.10452 * 7 6 4 9 9 C 1.53086 * 109.41649 * 298.85084 * 8 7 6 10 10 C 1.53173 * 109.52490 * 149.99903 * 4 3 2 11 11 H 1.08999 * 109.53995 * 56.93342 * 10 4 3 12 12 C 1.53005 * 109.54556 * 296.76019 * 10 4 3 13 13 C 1.50694 * 109.47186 * 175.17570 * 12 10 4 14 14 O 1.21284 * 120.00226 * 359.97438 * 13 12 10 15 15 N 1.34782 * 120.00200 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99640 * 359.97438 * 15 13 12 17 17 C 1.46491 * 120.00198 * 180.02562 * 15 13 12 18 18 C 1.53503 * 114.20774 * 239.99746 * 17 15 13 19 19 N 1.47066 * 87.98596 * 220.34520 * 18 17 15 20 20 C 1.36938 * 136.05640 * 207.07967 * 19 18 17 21 21 H 1.08004 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99984 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99909 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99701 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47078 * 60.00293 * 24 22 20 26 26 H 1.48498 * 109.46962 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46870 * 300.00143 * 24 22 20 28 28 C 1.47060 * 87.88579 * 27.11915 * 19 18 17 29 29 H 1.09008 * 109.46757 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47313 * 299.99640 * 1 2 3 31 31 H 1.08994 * 109.47504 * 60.00299 * 1 2 3 32 32 H 1.09001 * 109.47313 * 240.00360 * 2 1 3 33 33 H 1.08994 * 109.47504 * 119.99701 * 2 1 3 34 34 H 1.08999 * 109.48874 * 62.54460 * 6 4 3 35 35 H 1.09003 * 109.41962 * 302.56219 * 6 4 3 36 36 H 1.09000 * 109.48101 * 178.85983 * 8 7 6 37 37 H 1.09005 * 109.48644 * 58.83533 * 8 7 6 38 38 H 1.09000 * 109.51995 * 297.69619 * 9 8 7 39 39 H 1.09003 * 109.57477 * 177.54704 * 9 8 7 40 40 H 1.08994 * 109.47378 * 55.17001 * 12 10 4 41 41 H 1.09001 * 109.46394 * 295.17268 * 12 10 4 42 42 H 1.09001 * 109.47473 * 270.00288 * 16 15 13 43 43 H 1.09000 * 109.47269 * 29.99778 * 16 15 13 44 44 H 1.08994 * 109.47260 * 149.99950 * 16 15 13 45 45 H 1.08999 * 113.41382 * 13.19880 * 17 15 13 46 46 H 1.09000 * 113.46355 * 105.56471 * 18 17 15 47 47 H 1.09003 * 113.46309 * 335.12917 * 18 17 15 48 48 H 0.97003 * 119.99575 * 179.97438 * 23 22 20 49 49 H 1.09006 * 113.47077 * 87.66003 * 28 19 18 50 50 H 1.08996 * 113.47134 * 218.09481 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8654 0.6010 -0.5102 6 6 3.9416 1.5079 1.4430 7 8 5.3601 1.6811 1.4410 8 6 5.7992 2.8917 0.8215 9 6 5.3649 2.8987 -0.6465 10 6 3.8426 2.7470 -0.7213 11 1 3.3669 3.6023 -0.2416 12 6 3.4068 2.6740 -2.1861 13 6 3.7059 3.9856 -2.8652 14 8 4.2169 4.8900 -2.2391 15 7 3.4056 4.1538 -4.1683 16 6 2.7889 3.0612 -4.9247 17 6 3.6969 5.4286 -4.8285 18 6 2.4624 6.1352 -5.4054 19 7 3.2780 6.4923 -6.5759 20 6 3.2795 7.4960 -7.5075 21 1 2.5339 8.2760 -7.4621 22 6 4.2393 7.5108 -8.5102 23 7 5.1476 6.5599 -8.5659 24 14 4.2417 8.8804 -9.7806 25 1 4.4153 10.1879 -9.0984 26 1 5.3587 8.6676 -10.7357 27 1 2.9526 8.8739 -10.5178 28 6 4.0906 5.2967 -6.3063 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.6900 0.5758 1.9489 35 1 3.4743 2.3426 1.9656 36 1 6.8858 2.9564 0.8795 37 1 5.3563 3.7447 1.3356 38 1 5.8399 2.0694 -1.1708 39 1 5.6605 3.8398 -1.1103 40 1 2.3365 2.4741 -2.2373 41 1 3.9504 1.8731 -2.6873 42 1 3.5680 2.4437 -5.3718 43 1 2.1826 2.4521 -4.2543 44 1 2.1573 3.4748 -5.7108 45 1 4.3525 6.0774 -4.2476 46 1 2.1425 6.9972 -4.8199 47 1 1.6427 5.4556 -5.6385 48 1 5.8181 6.5701 -9.2668 49 1 3.7046 4.3936 -6.7793 50 1 5.1552 5.4455 -6.4869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043376390.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:49 Heat of formation + Delta-G solvation = -91.682789 kcal Electronic energy + Delta-G solvation = -28987.574143 eV Core-core repulsion = 25016.173840 eV Total energy + Delta-G solvation = -3971.400304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56911 -40.65842 -39.33146 -38.39980 -35.94286 -35.30154 -34.06880 -32.40383 -30.90861 -30.13703 -29.17348 -27.86703 -26.43704 -25.66385 -24.53495 -24.08848 -23.43098 -21.56763 -20.96733 -19.87035 -18.88019 -18.32438 -17.85694 -17.51612 -17.20307 -16.94905 -16.73535 -16.61397 -16.15158 -15.78150 -15.75576 -15.37688 -14.87842 -14.56187 -14.30431 -14.08248 -13.85658 -13.75799 -13.53366 -13.40473 -13.32133 -13.15186 -13.13423 -12.99605 -12.85277 -12.69790 -12.61950 -12.35159 -12.15433 -12.07564 -11.98895 -11.91865 -11.67653 -11.38981 -11.34546 -10.94508 -10.91130 -10.71141 -10.11336 -9.50250 -8.99649 -7.95857 -5.30697 1.44487 1.48623 1.54694 1.66421 1.98849 2.46984 2.52309 3.04248 3.25902 3.41627 3.53499 3.62502 3.74833 3.80603 3.91973 4.04625 4.17968 4.24828 4.25241 4.30626 4.35189 4.37442 4.42679 4.46732 4.54047 4.57347 4.65198 4.70769 4.72097 4.75406 4.80968 4.84159 4.86399 4.90373 4.99077 5.07201 5.11057 5.15393 5.17961 5.24161 5.28940 5.36347 5.42186 5.69871 5.85971 6.05493 6.37848 6.51674 6.84838 7.23517 7.53234 8.51964 9.21588 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.002507 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.489322 B =11165.209953 C =12039.534101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.391 6.391 4 C 0.072 3.928 5 H 0.084 0.916 6 C 0.040 3.960 7 O -0.390 6.390 8 C 0.060 3.940 9 C -0.150 4.150 10 C -0.068 4.068 11 H 0.064 0.936 12 C -0.119 4.119 13 C 0.508 3.492 14 O -0.582 6.582 15 N -0.600 5.600 16 C 0.072 3.928 17 C 0.113 3.887 18 C 0.112 3.888 19 N -0.636 5.636 20 C -0.235 4.235 21 H 0.087 0.913 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.985 3.015 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.155 3.845 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.251 0.749 49 H 0.039 0.961 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 -18.510 18.877 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.311 6.311 4 C 0.014 3.986 5 H 0.102 0.898 6 C -0.037 4.037 7 O -0.309 6.309 8 C -0.017 4.017 9 C -0.188 4.188 10 C -0.087 4.087 11 H 0.083 0.917 12 C -0.158 4.158 13 C 0.298 3.702 14 O -0.462 6.462 15 N -0.331 5.331 16 C -0.070 4.070 17 C 0.007 3.993 18 C -0.014 4.014 19 N -0.363 5.363 20 C -0.362 4.362 21 H 0.105 0.895 22 C -0.258 4.258 23 N -0.600 5.600 24 Si 0.812 3.188 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.199 1.199 28 C 0.028 3.972 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.002 -17.837 18.980 26.729 hybrid contribution 0.155 1.016 -1.201 1.581 sum -5.847 -16.822 17.779 25.164 Atomic orbital electron populations 1.21769 0.93213 1.03233 1.02631 1.22756 0.96057 0.82788 1.01239 1.87939 1.19989 1.28120 1.95057 1.22643 0.81788 0.98044 0.96172 0.89811 1.23100 0.81166 1.03080 0.96344 1.87918 1.21829 1.41729 1.79402 1.22674 1.00897 0.86417 0.91687 1.22316 0.94684 1.03761 0.97997 1.20987 0.95973 0.97367 0.94373 0.91735 1.21688 1.05071 0.93954 0.95082 1.21366 0.76989 0.90645 0.81173 1.90628 1.45343 1.45423 1.64813 1.47942 1.60804 1.14217 1.10176 1.22035 0.98625 0.88802 0.97505 1.22945 0.97910 0.85658 0.92790 1.22903 0.94434 0.96766 0.87323 1.45550 1.33862 1.25361 1.31497 1.19274 1.11778 1.01070 1.04102 0.89535 1.25704 0.97661 1.01230 1.01198 1.70008 1.18874 1.35493 1.35610 0.85067 0.77179 0.78373 0.78187 1.20266 1.21798 1.19943 1.22356 0.96332 0.89122 0.89376 0.89350 0.92532 0.92336 0.91995 0.92373 0.87197 0.92940 0.87416 0.93236 0.90467 0.90505 0.86596 0.86736 0.91433 0.87680 0.91423 0.88871 0.93936 0.92511 0.94040 0.94289 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.52 6.47 71.98 0.47 0.99 16 3 O -0.39 -6.53 9.39 -148.98 -1.40 -7.93 16 4 C 0.07 1.17 2.21 30.68 0.07 1.24 16 5 H 0.08 1.16 7.79 -2.39 -0.02 1.14 16 6 C 0.04 0.67 6.47 72.01 0.47 1.14 16 7 O -0.39 -7.87 10.77 -148.98 -1.60 -9.47 16 8 C 0.06 1.17 6.84 72.01 0.49 1.67 16 9 C -0.15 -3.24 5.13 30.68 0.16 -3.08 16 10 C -0.07 -1.42 1.64 -10.68 -0.02 -1.43 16 11 H 0.06 1.66 7.96 -2.39 -0.02 1.65 16 12 C -0.12 -2.35 3.67 29.85 0.11 -2.25 16 13 C 0.51 15.14 7.41 87.65 0.65 15.79 16 14 O -0.58 -21.91 13.50 -3.04 -0.04 -21.95 16 15 N -0.60 -18.47 3.11 -821.90 -2.56 -21.03 16 16 C 0.07 1.61 8.91 127.77 1.14 2.75 16 17 C 0.11 4.56 4.56 45.47 0.21 4.77 16 18 C 0.11 4.73 8.24 83.18 0.69 5.42 16 19 N -0.64 -33.57 3.78 -738.55 -2.79 -36.36 16 20 C -0.23 -13.42 10.75 84.03 0.90 -12.51 16 21 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 22 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 23 N -0.95 -57.80 11.51 21.65 0.25 -57.56 16 24 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 28 C 0.15 7.41 6.81 83.18 0.57 7.97 16 29 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 33 H 0.06 0.52 7.96 -2.39 -0.02 0.50 16 34 H 0.11 1.41 7.96 -2.39 -0.02 1.39 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 2.11 6.05 -2.39 -0.01 2.10 16 40 H 0.12 1.98 6.91 -2.39 -0.02 1.96 16 41 H 0.11 1.75 8.11 -2.39 -0.02 1.73 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.54 6.44 -2.39 -0.02 1.53 16 44 H 0.07 1.68 6.18 -2.39 -0.01 1.67 16 45 H 0.09 4.26 7.30 -2.39 -0.02 4.24 16 46 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 2.16 6.97 -2.39 -0.02 2.15 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.04 1.79 6.56 -2.38 -0.02 1.77 16 50 H 0.04 1.96 7.12 -2.39 -0.02 1.94 16 Total: -1.00 -72.92 388.66 1.89 -71.03 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.91 Total: 16.87 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.10 Total: 18.46 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -5.10 Total: -114.95 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -3.04 Total: -39.35 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.92 1.89 -71.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043376390.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.649 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds