Wall clock time and date at job start Fri Apr 10 2020 18:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42895 * 109.47086 * 2 1 4 4 C 1.42902 * 113.99767 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.57328 * 330.15042 * 4 3 2 6 6 C 1.53095 * 109.52162 * 90.31501 * 4 3 2 7 7 O 1.42902 * 109.41304 * 177.51629 * 6 4 3 8 8 C 1.42903 * 114.09493 * 298.83659 * 7 6 4 9 9 C 1.53093 * 109.41708 * 61.16020 * 8 7 6 10 10 C 1.53178 * 109.16163 * 302.38994 * 9 8 7 11 11 H 1.08996 * 109.61742 * 297.07165 * 10 9 8 12 12 C 1.53001 * 109.54289 * 176.84634 * 10 9 8 13 13 C 1.50696 * 109.47061 * 65.44358 * 12 10 9 14 14 O 1.21278 * 120.00054 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99698 * 180.02562 * 13 12 10 16 16 C 1.46499 * 120.00273 * 0.02562 * 15 13 12 17 17 C 1.46499 * 119.99936 * 180.02562 * 15 13 12 18 18 C 1.53496 * 114.20584 * 240.00048 * 17 15 13 19 19 N 1.47070 * 87.98352 * 220.34104 * 18 17 15 20 20 C 1.36935 * 136.05550 * 207.07944 * 19 18 17 21 21 H 1.08005 * 120.00172 * 6.50069 * 20 19 18 22 22 C 1.38815 * 119.99990 * 186.49806 * 20 19 18 23 23 N 1.31619 * 119.99663 * 6.42579 * 22 20 19 24 24 Si 1.86800 * 119.99976 * 186.42252 * 22 20 19 25 25 H 1.48495 * 109.47340 * 265.02201 * 24 22 20 26 26 H 1.48498 * 109.46951 * 25.02385 * 24 22 20 27 27 H 1.48498 * 109.46744 * 145.01993 * 24 22 20 28 28 C 1.47064 * 87.88277 * 27.34197 * 19 18 17 29 29 H 1.08999 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46680 * 299.99850 * 1 2 3 31 31 H 1.08993 * 109.47274 * 60.00118 * 1 2 3 32 32 H 1.08996 * 109.46706 * 239.99623 * 2 1 3 33 33 H 1.09000 * 109.46674 * 119.99642 * 2 1 3 34 34 H 1.09002 * 109.47599 * 297.49428 * 6 4 3 35 35 H 1.08994 * 109.48697 * 57.52668 * 6 4 3 36 36 H 1.08998 * 109.48247 * 181.14086 * 8 7 6 37 37 H 1.08999 * 109.48254 * 301.16547 * 8 7 6 38 38 H 1.08997 * 109.52512 * 182.48301 * 9 8 7 39 39 H 1.08996 * 109.52125 * 62.29603 * 9 8 7 40 40 H 1.09005 * 109.46806 * 305.44509 * 12 10 9 41 41 H 1.08996 * 109.46788 * 185.44877 * 12 10 9 42 42 H 1.09008 * 109.46835 * 270.00090 * 16 15 13 43 43 H 1.09001 * 109.47128 * 29.99663 * 16 15 13 44 44 H 1.08998 * 109.47015 * 150.00253 * 16 15 13 45 45 H 1.09005 * 113.27883 * 13.06116 * 17 15 13 46 46 H 1.09004 * 113.46865 * 105.56542 * 18 17 15 47 47 H 1.08993 * 113.51976 * 335.12951 * 18 17 15 48 48 H 0.97005 * 119.99413 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.46743 * 87.44096 * 28 19 18 50 50 H 1.08999 * 113.46191 * 217.87327 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8655 0.6008 0.5103 6 6 3.9397 1.5085 -1.4437 7 8 5.3585 1.6794 -1.4417 8 6 5.7995 2.8891 -0.8217 9 6 5.3654 2.8962 0.6464 10 6 3.8428 2.7468 0.7212 11 1 3.3672 3.6022 0.2414 12 6 3.4071 2.6739 2.1860 13 6 3.7024 3.9870 2.8639 14 8 4.2108 4.8922 2.2371 15 7 3.4014 4.1554 4.1668 16 6 2.7878 3.0617 4.9242 17 6 3.6879 5.4321 4.8257 18 6 4.6523 5.3240 6.0150 19 7 3.8062 6.2968 6.7227 20 6 3.9903 7.2329 7.7050 21 1 4.9851 7.4482 8.0662 22 6 2.8983 7.9051 8.2366 23 7 1.6777 7.5556 7.8895 24 14 3.1611 9.3055 9.4446 25 1 3.0686 8.7860 10.8326 26 1 4.5040 9.9010 9.2274 27 1 2.1196 10.3429 9.2338 28 6 2.6742 5.8172 5.9157 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.6865 0.5769 -1.9498 35 1 3.4736 2.3442 -1.9657 36 1 6.8861 2.9521 -0.8798 37 1 5.3579 3.7429 -1.3356 38 1 5.6624 3.8371 1.1095 39 1 5.8391 2.0660 1.1702 40 1 3.9529 1.8750 2.6881 41 1 2.3374 2.4710 2.2372 42 1 1.7025 3.1340 4.8521 43 1 3.1163 2.1067 4.5141 44 1 3.0879 3.1308 5.9698 45 1 3.9284 6.2332 4.1267 46 1 5.6533 5.6967 5.7975 47 1 4.6615 4.3380 6.4794 48 1 0.9146 8.0251 8.2613 49 1 2.1611 4.9608 6.3533 50 1 1.9899 6.6100 5.6135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043376404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:57 Heat of formation + Delta-G solvation = -70.537268 kcal Electronic energy + Delta-G solvation = -28981.876301 eV Core-core repulsion = 25011.392936 eV Total energy + Delta-G solvation = -3970.483365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.48685 -39.50886 -37.81398 -37.68660 -34.51695 -34.38961 -32.06570 -31.79547 -30.07717 -29.01854 -27.57809 -26.62857 -24.63488 -24.40234 -23.68616 -22.88893 -22.66880 -20.49785 -19.63868 -18.48701 -17.49963 -17.03334 -16.75957 -16.52799 -16.03814 -15.86692 -15.62280 -15.44820 -14.92753 -14.83637 -14.40202 -13.91681 -13.74681 -13.61974 -13.16756 -12.92420 -12.77440 -12.73579 -12.54921 -12.48757 -12.15517 -11.99324 -11.79826 -11.73507 -11.54654 -11.37309 -11.28253 -11.07297 -10.97691 -10.87733 -10.77192 -10.59814 -10.22794 -10.20285 -10.12389 -9.59383 -9.47197 -9.23323 -8.82514 -8.09938 -6.94875 -5.84024 -3.15439 2.87696 3.17921 3.27071 3.37789 3.42758 3.44904 3.77025 4.35722 4.44657 4.45585 4.56938 4.73930 4.77737 4.82139 4.92661 4.99465 5.03853 5.13816 5.17532 5.26685 5.32173 5.34163 5.37043 5.40385 5.43551 5.49404 5.49633 5.59852 5.64506 5.70456 5.75444 5.82366 5.86182 5.86775 6.06051 6.10561 6.14376 6.17791 6.42933 6.56432 6.76353 6.78028 7.06395 7.11108 7.30244 7.45338 7.77143 7.90497 8.47034 8.97744 9.64116 10.56727 11.34767 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.002524 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.256546 B =11090.109439 C =12053.821790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.062 3.938 5 H 0.069 0.931 6 C 0.043 3.957 7 O -0.381 6.381 8 C 0.058 3.942 9 C -0.153 4.153 10 C -0.069 4.069 11 H 0.089 0.911 12 C -0.132 4.132 13 C 0.512 3.488 14 O -0.545 6.545 15 N -0.598 5.598 16 C 0.077 3.923 17 C 0.086 3.914 18 C 0.106 3.894 19 N -0.603 5.603 20 C -0.219 4.219 21 H 0.083 0.917 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.288 1.288 26 H -0.279 1.279 27 H -0.289 1.289 28 C 0.155 3.845 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.255 0.745 49 H 0.035 0.965 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -18.215 -17.232 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.294 6.294 4 C 0.004 3.996 5 H 0.087 0.913 6 C -0.034 4.034 7 O -0.300 6.300 8 C -0.018 4.018 9 C -0.191 4.191 10 C -0.087 4.087 11 H 0.107 0.893 12 C -0.172 4.172 13 C 0.301 3.699 14 O -0.424 6.424 15 N -0.330 5.330 16 C -0.066 4.066 17 C -0.018 4.018 18 C -0.022 4.022 19 N -0.329 5.329 20 C -0.347 4.347 21 H 0.101 0.899 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.204 1.204 27 H -0.215 1.215 28 C 0.029 3.971 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.136 0.864 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.406 -17.432 -17.365 24.646 hybrid contribution -0.164 0.445 1.103 1.201 sum 1.242 -16.988 -16.262 23.549 Atomic orbital electron populations 1.21751 0.93596 1.02241 1.03360 1.22545 0.95722 0.83833 1.00054 1.87958 1.20148 1.26352 1.94962 1.22804 0.81554 0.98845 0.96402 0.91278 1.22990 0.81915 1.02403 0.96109 1.87927 1.20905 1.41780 1.79392 1.22674 1.00127 0.86633 0.92364 1.22406 0.94411 1.04783 0.97488 1.21035 0.96238 0.97109 0.94367 0.89266 1.21692 1.03923 0.96119 0.95448 1.20568 0.78073 0.89619 0.81685 1.90628 1.43979 1.43719 1.64061 1.47931 1.60549 1.14798 1.09696 1.21793 0.98114 0.88802 0.97919 1.23755 1.00129 0.84715 0.93228 1.22813 0.95374 0.93294 0.90701 1.45352 1.06047 1.38156 1.43327 1.18921 0.93269 1.11037 1.11437 0.89894 1.24851 0.95089 1.00388 0.99996 1.69853 0.97034 1.42474 1.47084 0.86061 0.77325 0.81612 0.80530 1.21554 1.20416 1.21506 1.22396 0.91514 0.96856 0.86372 0.91152 0.91613 0.91846 0.93504 0.93218 0.89085 0.92223 0.88594 0.92736 0.87862 0.91492 0.89375 0.88230 0.92405 0.91692 0.90345 0.86354 0.93921 0.94994 0.93533 0.94784 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.40 6.47 37.16 0.24 0.64 16 3 O -0.37 -3.68 9.38 -35.23 -0.33 -4.01 16 4 C 0.06 0.59 2.21 -26.59 -0.06 0.53 16 5 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 6 C 0.04 0.40 6.47 37.21 0.24 0.64 16 7 O -0.38 -4.10 10.77 -35.23 -0.38 -4.48 16 8 C 0.06 0.58 6.84 37.21 0.25 0.84 16 9 C -0.15 -1.66 5.13 -26.59 -0.14 -1.80 16 10 C -0.07 -0.76 1.64 -90.43 -0.15 -0.91 16 11 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 12 C -0.13 -1.47 3.67 -27.88 -0.10 -1.58 16 13 C 0.51 7.84 7.41 -10.99 -0.08 7.76 16 14 O -0.55 -10.02 13.51 5.56 0.08 -9.94 16 15 N -0.60 -9.51 3.11 -173.56 -0.54 -10.06 16 16 C 0.08 0.97 8.91 59.85 0.53 1.50 16 17 C 0.09 1.70 4.58 -67.68 -0.31 1.39 16 18 C 0.11 2.22 8.24 -8.51 -0.07 2.15 16 19 N -0.60 -15.63 3.76 -184.64 -0.70 -16.32 16 20 C -0.22 -6.19 10.73 -15.06 -0.16 -6.35 16 21 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -27.25 11.81 55.49 0.66 -26.60 16 24 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.16 3.64 6.64 -8.38 -0.06 3.58 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.29 7.96 -51.93 -0.41 -0.12 16 33 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.09 0.71 7.96 -51.93 -0.41 0.29 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.35 6.07 -51.93 -0.32 1.03 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 41 H 0.10 1.07 7.61 -51.93 -0.40 0.67 16 42 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 43 H 0.06 0.61 6.44 -51.93 -0.33 0.27 16 44 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 45 H 0.12 2.56 7.29 -51.93 -0.38 2.18 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.03 0.64 6.97 -51.93 -0.36 0.28 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.03 0.79 6.54 -51.93 -0.34 0.45 16 50 H 0.06 1.67 7.57 -51.93 -0.39 1.27 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -32.88 389.20 -8.58 -41.47 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.64 Total: -0.54 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.43 Total: 7.52 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.58 Total: -52.98 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.63 Total: -18.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.88 -8.58 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043376404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.072 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds