Wall clock time and date at job start Fri Apr 10 2020 18:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30715 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48495 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47342 * 299.99966 * 3 2 1 6 6 H 1.48504 * 109.47383 * 60.00234 * 3 2 1 7 7 C 1.40020 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.39587 * 120.00420 * 359.97438 * 7 2 1 10 10 O 1.22116 * 119.99763 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00077 * 179.97438 * 9 7 2 12 12 N 1.40097 * 119.99663 * 180.02562 * 11 9 7 13 13 C 1.31460 * 120.00031 * 180.02562 * 12 11 9 14 14 C 1.40805 * 120.00347 * 180.02562 * 13 12 11 15 15 C 1.39697 * 126.33108 * 0.15930 * 14 13 12 16 16 C 1.39076 * 107.07354 * 180.27890 * 15 14 13 17 17 C 1.36363 * 108.06807 * 359.74525 * 16 15 14 18 18 N 1.35927 * 109.00353 * 359.97438 * 17 16 15 19 19 C 1.40111 * 125.74284 * 180.02562 * 18 17 16 20 20 C 1.38989 * 119.99500 * 130.00517 * 19 18 17 21 21 C 1.38222 * 120.23217 * 180.02562 * 20 19 18 22 22 C 1.38011 * 120.22824 * 359.97438 * 21 20 19 23 23 C 1.39640 * 119.98480 * 359.77131 * 22 21 20 24 24 C 1.47736 * 120.11572 * 180.25356 * 23 22 21 25 25 O 1.21467 * 120.00054 * 180.23295 * 24 23 22 26 26 O 1.34709 * 120.00109 * 0.23112 * 24 23 22 27 27 C 1.38573 * 119.99185 * 310.03111 * 19 18 17 28 28 H 0.97001 * 119.99671 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00157 * 0.02562 * 11 9 7 30 30 H 1.08006 * 119.99560 * 0.02562 * 13 12 11 31 31 H 1.07999 * 126.46119 * 0.02562 * 15 14 13 32 32 H 1.08000 * 125.96340 * 179.70446 * 16 15 14 33 33 H 1.07999 * 125.49612 * 180.02562 * 17 16 15 34 34 H 1.07998 * 119.88248 * 0.02562 * 20 19 18 35 35 H 1.07996 * 119.88440 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.00572 * 180.02562 * 22 21 20 37 37 H 0.96698 * 117.00096 * 179.97438 * 26 24 23 38 38 H 1.08002 * 120.11135 * 359.97194 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3464 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0072 -1.2126 -0.0005 8 1 3.0872 -1.2126 -0.0001 9 6 1.3093 -2.4215 -0.0005 10 8 0.0881 -2.4215 -0.0005 11 7 1.9831 -3.5887 -0.0016 12 7 1.2826 -4.8020 -0.0021 13 6 1.9398 -5.9405 -0.0026 14 6 1.2358 -7.1599 -0.0037 15 6 -0.1527 -7.3139 -0.0075 16 6 -0.4119 -8.6803 -0.0008 17 6 0.7829 -9.3375 0.0011 18 7 1.7901 -8.4247 -0.0048 19 6 3.1602 -8.7177 -0.0056 20 6 4.0001 -8.1108 -0.9318 21 6 5.3524 -8.3967 -0.9373 22 6 5.8782 -9.2865 -0.0226 23 6 5.0437 -9.8976 0.9155 24 6 5.6044 -10.8463 1.8996 25 8 4.8759 -11.3799 2.7120 26 8 6.9234 -11.1195 1.8958 27 6 3.6776 -9.6131 0.9169 28 1 -0.4850 0.8401 0.0004 29 1 2.9532 -3.5888 -0.0020 30 1 3.0199 -5.9405 -0.0022 31 1 -0.8863 -6.5214 -0.0105 32 1 -1.3890 -9.1404 0.0030 33 1 0.9086 -10.4101 0.0056 34 1 3.5947 -7.4133 -1.6498 35 1 6.0000 -7.9215 -1.6592 36 1 6.9354 -9.5069 -0.0299 37 1 7.2438 -11.7462 2.5589 38 1 3.0264 -10.0856 1.6374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409106829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:11 Heat of formation + Delta-G solvation = 1.322960 kcal Electronic energy + Delta-G solvation = -25532.928794 eV Core-core repulsion = 21535.778342 eV Total energy + Delta-G solvation = -3997.150452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56755 -40.64320 -38.79999 -37.62618 -36.54385 -35.25040 -33.43551 -32.69041 -31.93633 -31.31865 -29.21262 -28.28452 -26.37864 -25.27167 -23.54293 -22.76501 -21.82213 -20.50495 -20.03113 -19.41559 -18.37857 -18.13928 -17.20462 -16.68833 -16.33763 -16.09065 -15.90805 -15.82516 -15.54693 -14.64655 -14.43009 -14.06456 -13.85815 -13.59575 -13.56529 -13.18525 -12.93500 -12.73121 -12.37454 -12.08828 -12.00976 -11.95547 -11.88272 -11.43075 -11.39534 -11.10214 -10.92051 -10.67957 -10.36034 -9.80821 -9.67599 -9.48412 -9.07614 -8.48570 -8.41965 -7.77305 -6.93835 -6.42063 -4.99354 0.12756 0.61513 1.58903 2.06111 2.37080 2.75932 2.87038 3.02198 3.09564 3.14597 3.21831 3.60086 3.75242 4.08266 4.28905 4.41736 4.45326 4.54762 4.62255 4.83831 4.92889 5.16843 5.25376 5.32178 5.54620 5.58469 5.68505 5.75907 5.80095 5.83071 5.99260 6.01478 6.16116 6.26628 6.50130 6.65982 7.11718 7.18033 7.25958 7.40572 7.44246 7.83873 7.94982 8.63518 8.73506 9.27721 10.36161 10.63429 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002551 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.462371 B =10971.425649 C =12276.488829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.556 3.444 10 O -0.553 6.553 11 N -0.585 5.585 12 N -0.170 5.170 13 C 0.029 3.971 14 C 0.067 3.933 15 C -0.139 4.139 16 C -0.187 4.187 17 C -0.014 4.014 18 N -0.394 5.394 19 C 0.123 3.877 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.062 4.062 23 C -0.115 4.115 24 C 0.530 3.470 25 O -0.509 6.509 26 O -0.511 6.511 27 C -0.056 4.056 28 H 0.274 0.726 29 H 0.367 0.633 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.417 0.583 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.055 -20.669 -0.901 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.366 3.634 10 O -0.432 6.432 11 N -0.331 5.331 12 N 0.018 4.982 13 C -0.178 4.178 14 C -0.041 4.041 15 C -0.166 4.166 16 C -0.211 4.211 17 C -0.144 4.144 18 N -0.069 5.069 19 C 0.032 3.968 20 C -0.100 4.100 21 C -0.132 4.132 22 C -0.080 4.080 23 C -0.117 4.117 24 C 0.374 3.626 25 O -0.398 6.398 26 O -0.323 6.323 27 C -0.075 4.075 28 H 0.085 0.915 29 H 0.203 0.797 30 H 0.116 0.884 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.276 0.724 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.123 -19.824 -0.971 23.257 hybrid contribution 2.108 0.052 0.499 2.167 sum 14.231 -19.772 -0.471 24.365 Atomic orbital electron populations 1.70085 1.07321 1.27981 1.31385 1.25760 0.94704 1.00756 0.92473 0.86151 0.80398 0.80776 0.78540 1.18526 1.19795 1.19804 1.19520 0.94608 0.89835 1.53052 0.91104 1.16524 0.87955 0.80273 0.78682 1.90775 1.13273 1.85192 1.54002 1.48164 1.07376 1.01829 1.75766 1.75197 1.26637 0.92292 1.04091 1.21642 0.96029 0.90211 1.09897 1.17617 0.91904 0.82318 1.12309 1.21680 0.93005 0.96532 1.05418 1.20891 0.96912 0.93904 1.09441 1.22055 0.86333 0.94467 1.11571 1.41341 1.02425 1.06242 1.56864 1.17530 0.82962 0.99433 0.96898 1.21597 0.93746 0.98411 0.96259 1.21116 0.94498 0.98119 0.99475 1.21566 1.00446 0.93638 0.92394 1.18785 0.93421 1.00971 0.98484 1.20739 0.79987 0.79595 0.82295 1.90923 1.60375 1.50115 1.38374 1.84533 1.25379 1.63110 1.59252 1.21161 0.93963 0.96224 0.96174 0.91478 0.79722 0.88398 0.83146 0.84139 0.81972 0.84018 0.83871 0.83746 0.72415 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.60 11.68 55.55 0.65 -20.95 16 2 C 0.09 2.34 5.49 -17.36 -0.10 2.25 16 3 Si 0.92 19.17 29.56 -169.99 -5.02 14.15 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.53 -14.66 9.20 -38.41 -0.35 -15.01 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 C 0.56 16.17 7.62 -15.76 -0.12 16.05 16 10 O -0.55 -18.51 15.17 4.81 0.07 -18.44 16 11 N -0.59 -14.03 6.26 28.71 0.18 -13.85 16 12 N -0.17 -3.88 10.75 30.93 0.33 -3.55 16 13 C 0.03 0.52 9.86 -16.74 -0.17 0.36 16 14 C 0.07 1.11 6.60 -83.53 -0.55 0.56 16 15 C -0.14 -2.32 10.57 -38.73 -0.41 -2.73 16 16 C -0.19 -2.53 10.80 -39.95 -0.43 -2.96 16 17 C -0.01 -0.18 11.09 -16.41 -0.18 -0.36 16 18 N -0.39 -5.32 2.89 -58.01 -0.17 -5.49 16 19 C 0.12 1.39 5.76 -83.67 -0.48 0.91 16 20 C -0.08 -0.78 8.33 -39.31 -0.33 -1.11 16 21 C -0.11 -0.82 10.02 -39.67 -0.40 -1.22 16 22 C -0.06 -0.45 9.61 -39.14 -0.38 -0.82 16 23 C -0.11 -1.05 5.87 -105.01 -0.62 -1.66 16 24 C 0.53 4.84 8.27 34.61 0.29 5.12 16 25 O -0.51 -6.19 17.13 -19.24 -0.33 -6.52 16 26 O -0.51 -2.96 12.68 -40.52 -0.51 -3.47 16 27 C -0.06 -0.58 9.20 -38.97 -0.36 -0.94 16 28 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 29 H 0.37 7.37 8.62 -182.60 -1.57 5.80 16 30 H 0.10 1.51 6.74 -52.48 -0.35 1.15 16 31 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 32 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.14 1.40 7.61 -52.49 -0.40 1.00 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.14 0.73 7.60 -52.49 -0.40 0.34 16 37 H 0.42 0.62 9.11 45.56 0.42 1.04 16 38 H 0.15 1.58 7.65 -52.49 -0.40 1.18 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -38.18 351.43 -8.03 -46.22 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.95 Total: 8.17 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -4.58 Total: -1.58 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.99 Total: -43.83 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.77 Total: -28.43 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.18 -8.03 -46.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409106829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.542 kcal (2) G-P(sol) polarization free energy of solvation -38.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds