Wall clock time and date at job start Fri Apr 10 2020 18:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30715 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48495 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47342 * 299.99966 * 3 2 1 6 6 H 1.48504 * 109.47383 * 60.00234 * 3 2 1 7 7 C 1.40020 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.39587 * 120.00420 * 359.97438 * 7 2 1 10 10 O 1.22116 * 119.99763 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00077 * 179.97438 * 9 7 2 12 12 N 1.40097 * 119.99663 * 180.02562 * 11 9 7 13 13 C 1.31460 * 120.00031 * 180.02562 * 12 11 9 14 14 C 1.40805 * 120.00347 * 180.02562 * 13 12 11 15 15 C 1.39697 * 126.33108 * 0.15930 * 14 13 12 16 16 C 1.39076 * 107.07354 * 180.27890 * 15 14 13 17 17 C 1.36363 * 108.06807 * 359.74525 * 16 15 14 18 18 N 1.35927 * 109.00353 * 359.97438 * 17 16 15 19 19 C 1.40111 * 125.74284 * 180.02562 * 18 17 16 20 20 C 1.38989 * 119.99500 * 130.00517 * 19 18 17 21 21 C 1.38222 * 120.23217 * 180.02562 * 20 19 18 22 22 C 1.38011 * 120.22824 * 359.97438 * 21 20 19 23 23 C 1.39640 * 119.98480 * 359.77131 * 22 21 20 24 24 C 1.47736 * 120.11572 * 180.25356 * 23 22 21 25 25 O 1.21467 * 120.00054 * 180.23295 * 24 23 22 26 26 O 1.34709 * 120.00109 * 0.23112 * 24 23 22 27 27 C 1.38573 * 119.99185 * 310.03111 * 19 18 17 28 28 H 0.97001 * 119.99671 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00157 * 0.02562 * 11 9 7 30 30 H 1.08006 * 119.99560 * 0.02562 * 13 12 11 31 31 H 1.07999 * 126.46119 * 0.02562 * 15 14 13 32 32 H 1.08000 * 125.96340 * 179.70446 * 16 15 14 33 33 H 1.07999 * 125.49612 * 180.02562 * 17 16 15 34 34 H 1.07998 * 119.88248 * 0.02562 * 20 19 18 35 35 H 1.07996 * 119.88440 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.00572 * 180.02562 * 22 21 20 37 37 H 0.96698 * 117.00096 * 179.97438 * 26 24 23 38 38 H 1.08002 * 120.11135 * 359.97194 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3464 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0072 -1.2126 -0.0005 8 1 3.0872 -1.2126 -0.0001 9 6 1.3093 -2.4215 -0.0005 10 8 0.0881 -2.4215 -0.0005 11 7 1.9831 -3.5887 -0.0016 12 7 1.2826 -4.8020 -0.0021 13 6 1.9398 -5.9405 -0.0026 14 6 1.2358 -7.1599 -0.0037 15 6 -0.1527 -7.3139 -0.0075 16 6 -0.4119 -8.6803 -0.0008 17 6 0.7829 -9.3375 0.0011 18 7 1.7901 -8.4247 -0.0048 19 6 3.1602 -8.7177 -0.0056 20 6 4.0001 -8.1108 -0.9318 21 6 5.3524 -8.3967 -0.9373 22 6 5.8782 -9.2865 -0.0226 23 6 5.0437 -9.8976 0.9155 24 6 5.6044 -10.8463 1.8996 25 8 4.8759 -11.3799 2.7120 26 8 6.9234 -11.1195 1.8958 27 6 3.6776 -9.6131 0.9169 28 1 -0.4850 0.8401 0.0004 29 1 2.9532 -3.5888 -0.0020 30 1 3.0199 -5.9405 -0.0022 31 1 -0.8863 -6.5214 -0.0105 32 1 -1.3890 -9.1404 0.0030 33 1 0.9086 -10.4101 0.0056 34 1 3.5947 -7.4133 -1.6498 35 1 6.0000 -7.9215 -1.6592 36 1 6.9354 -9.5069 -0.0299 37 1 7.2438 -11.7462 2.5589 38 1 3.0264 -10.0856 1.6374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409106829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:11 Heat of formation + Delta-G solvation = -26.381744 kcal Electronic energy + Delta-G solvation = -25534.130160 eV Core-core repulsion = 21535.778342 eV Total energy + Delta-G solvation = -3998.351818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.60158 -41.37793 -39.64171 -39.52171 -37.16455 -37.03355 -34.73475 -34.35771 -33.25299 -32.48588 -30.17069 -29.87344 -28.18988 -25.98141 -24.65545 -23.94726 -22.68229 -22.05060 -21.19016 -20.66843 -19.80500 -18.95506 -18.47083 -17.76986 -17.61957 -17.40789 -17.04613 -16.77769 -16.63876 -15.91670 -15.51737 -15.28321 -15.14904 -14.75486 -14.69902 -14.56509 -14.41247 -13.83822 -13.31527 -13.27696 -13.17827 -13.13428 -12.99674 -12.73714 -12.67923 -12.63754 -12.55370 -11.97552 -11.82461 -11.07887 -11.02588 -10.68351 -10.31678 -10.12393 -9.99091 -9.44114 -8.48025 -8.43353 -7.11923 -0.58347 -0.19979 0.33601 1.33580 1.38446 1.39967 1.47728 1.60230 1.73808 1.96105 2.15916 2.18852 2.41141 2.45096 2.53405 3.62993 3.65387 3.72963 3.77997 3.82426 3.97023 4.00861 4.14784 4.34614 4.50452 4.55468 4.68771 4.71233 4.83711 5.00863 5.07430 5.16566 5.17362 5.30915 5.35179 5.49216 5.52675 5.81108 5.88149 6.01097 6.02580 6.39760 6.66291 6.88745 6.91596 7.42866 8.40258 8.58547 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002551 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.462371 B =10971.425649 C =12276.488829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.028 3.972 3 Si 1.012 2.988 4 H -0.241 1.241 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.557 4.557 8 H 0.096 0.904 9 C 0.543 3.457 10 O -0.618 6.618 11 N -0.591 5.591 12 N -0.250 5.250 13 C 0.086 3.914 14 C 0.021 3.979 15 C -0.149 4.149 16 C -0.200 4.200 17 C 0.018 3.982 18 N -0.384 5.384 19 C 0.094 3.906 20 C -0.088 4.088 21 C -0.102 4.102 22 C -0.043 4.043 23 C -0.124 4.124 24 C 0.537 3.463 25 O -0.547 6.547 26 O -0.498 6.498 27 C -0.059 4.059 28 H 0.282 0.718 29 H 0.383 0.617 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.166 0.834 33 H 0.203 0.797 34 H 0.137 0.863 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.437 0.563 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.015 -22.343 -1.337 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.191 4.191 3 Si 0.829 3.171 4 H -0.164 1.164 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.593 4.593 8 H 0.115 0.885 9 C 0.353 3.647 10 O -0.504 6.504 11 N -0.337 5.337 12 N -0.059 5.059 13 C -0.121 4.121 14 C -0.089 4.089 15 C -0.178 4.178 16 C -0.224 4.224 17 C -0.114 4.114 18 N -0.056 5.056 19 C 0.004 3.996 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.061 4.061 23 C -0.126 4.126 24 C 0.382 3.618 25 O -0.439 6.439 26 O -0.312 6.312 27 C -0.079 4.079 28 H 0.092 0.908 29 H 0.221 0.779 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.183 0.817 33 H 0.220 0.780 34 H 0.154 0.846 35 H 0.193 0.807 36 H 0.192 0.808 37 H 0.299 0.701 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.187 -21.553 -1.407 26.992 hybrid contribution 1.016 0.080 0.628 1.198 sum 17.204 -21.474 -0.778 27.526 Atomic orbital electron populations 1.70255 1.10019 1.29763 1.32596 1.27180 0.95565 1.05513 0.90822 0.84773 0.79349 0.74102 0.78826 1.16391 1.18916 1.19072 1.20077 0.95955 0.90113 1.53121 0.88542 1.16940 0.87461 0.82119 0.78137 1.90707 1.15787 1.86708 1.57154 1.47336 1.07684 1.01644 1.77013 1.75274 1.27636 0.92764 1.10274 1.22060 0.97402 0.89560 1.03116 1.17493 0.92064 0.83203 1.16098 1.21736 0.93138 0.97736 1.05202 1.21173 0.98830 0.92319 1.10062 1.22778 0.85478 0.96000 1.07118 1.41427 1.03832 1.05064 1.55323 1.17711 0.81929 1.01256 0.98676 1.21709 0.94788 0.98253 0.95930 1.21465 0.93592 0.97381 0.99572 1.21914 1.01533 0.91944 0.90707 1.18909 0.93118 1.01380 0.99160 1.20714 0.80629 0.78924 0.81527 1.90917 1.61480 1.51614 1.39888 1.84480 1.23371 1.63448 1.59864 1.21088 0.94763 0.96139 0.95886 0.90798 0.77925 0.85718 0.85909 0.81692 0.77990 0.84555 0.80695 0.80839 0.70077 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.75 11.68 21.83 0.26 -48.49 16 2 C 0.03 1.54 5.49 85.29 0.47 2.00 16 3 Si 1.01 39.35 29.56 68.60 2.03 41.37 16 4 H -0.24 -8.49 7.11 99.48 0.71 -7.78 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.56 -31.45 9.20 23.03 0.21 -31.24 16 8 H 0.10 4.73 7.85 -2.91 -0.02 4.70 16 9 C 0.54 33.36 7.62 84.57 0.64 34.01 16 10 O -0.62 -44.42 15.17 -5.70 -0.09 -44.50 16 11 N -0.59 -29.78 6.26 -181.13 -1.13 -30.91 16 12 N -0.25 -12.10 10.75 -56.07 -0.60 -12.71 16 13 C 0.09 3.17 9.86 85.38 0.84 4.02 16 14 C 0.02 0.69 6.60 39.14 0.26 0.95 16 15 C -0.15 -5.22 10.57 22.82 0.24 -4.98 16 16 C -0.20 -5.25 10.80 22.03 0.24 -5.01 16 17 C 0.02 0.41 11.09 83.62 0.93 1.34 16 18 N -0.38 -9.89 2.89 -337.46 -0.97 -10.86 16 19 C 0.09 1.96 5.76 38.08 0.22 2.18 16 20 C -0.09 -1.48 8.33 22.45 0.19 -1.29 16 21 C -0.10 -1.06 10.02 22.21 0.22 -0.84 16 22 C -0.04 -0.43 9.61 22.55 0.22 -0.22 16 23 C -0.12 -1.90 5.87 -20.11 -0.12 -2.01 16 24 C 0.54 8.41 8.27 70.33 0.58 8.99 16 25 O -0.55 -12.52 17.13 19.94 0.34 -12.17 16 26 O -0.50 -3.97 12.68 -56.19 -0.71 -4.68 16 27 C -0.06 -1.12 9.20 22.67 0.21 -0.91 16 28 H 0.28 15.29 8.29 -92.71 -0.77 14.52 16 29 H 0.38 15.84 8.62 -213.32 -1.84 14.01 16 30 H 0.13 3.76 6.74 -2.91 -0.02 3.74 16 31 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.20 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.14 2.45 7.61 -2.91 -0.02 2.42 16 35 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.17 0.79 7.60 -2.91 -0.02 0.77 16 37 H 0.44 -0.17 9.11 -74.06 -0.67 -0.84 16 38 H 0.14 2.81 7.65 -2.91 -0.02 2.79 16 Total: -1.00 -91.26 351.43 3.10 -88.16 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -1.36 Total: 27.81 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.35 Total: 6.98 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -2.46 Total: -102.97 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -0.46 Total: -61.35 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Total: -91.26 3.10 -88.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409106829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.776 kcal (2) G-P(sol) polarization free energy of solvation -91.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds