Wall clock time and date at job start Fri Apr 10 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99834 * 2 1 4 4 C 1.52996 * 109.46913 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47297 * 65.00199 * 4 3 2 6 6 C 1.36935 * 119.99643 * 274.72411 * 5 4 3 7 7 H 1.08002 * 119.99560 * 141.93163 * 6 5 4 8 8 C 1.38812 * 120.00232 * 321.93033 * 6 5 4 9 9 N 1.31615 * 120.00136 * 158.94935 * 8 6 5 10 10 Si 1.86800 * 119.99897 * 338.94617 * 8 6 5 11 11 H 1.48498 * 109.46779 * 95.36751 * 10 8 6 12 12 H 1.48500 * 109.47075 * 215.37041 * 10 8 6 13 13 H 1.48501 * 109.46936 * 335.37309 * 10 8 6 14 14 S 1.65601 * 120.00040 * 94.99430 * 5 4 3 15 15 O 1.42098 * 106.40083 * 209.52898 * 14 5 4 16 16 O 1.42098 * 106.40509 * 342.45171 * 14 5 4 17 17 C 1.76204 * 107.21690 * 95.99152 * 14 5 4 18 18 C 1.37967 * 119.88247 * 114.91403 * 17 14 5 19 19 C 1.38238 * 120.35378 * 179.82211 * 18 17 14 20 20 C 1.38396 * 119.76821 * 0.38826 * 19 18 17 21 21 C 1.37694 * 119.97251 * 359.68661 * 20 19 18 22 22 C 1.38924 * 120.79368 * 0.30321 * 21 20 19 23 23 O 1.36126 * 111.23696 * 179.28876 * 22 21 20 24 24 C 1.43768 * 109.25818 * 18.86147 * 23 22 21 25 25 C 1.51647 * 132.17566 * 180.54345 * 21 20 19 26 26 H 1.09006 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46798 * 299.99808 * 1 2 3 28 28 H 1.08997 * 109.47368 * 59.99850 * 1 2 3 29 29 H 1.09002 * 109.46741 * 60.00147 * 3 2 1 30 30 H 1.09004 * 109.47023 * 300.00172 * 3 2 1 31 31 H 1.08998 * 109.47176 * 304.99769 * 4 3 2 32 32 H 1.08999 * 109.47044 * 185.00050 * 4 3 2 33 33 H 0.97000 * 120.00177 * 180.02562 * 9 8 6 34 34 H 1.08006 * 119.82416 * 0.07191 * 18 17 14 35 35 H 1.08001 * 120.11914 * 180.12321 * 19 18 17 36 36 H 1.07996 * 120.01549 * 179.70818 * 20 19 18 37 37 H 1.08998 * 110.74825 * 90.65597 * 24 23 22 38 38 H 1.09003 * 110.74991 * 213.80886 * 24 23 22 39 39 H 1.09004 * 110.93993 * 46.12853 * 25 21 20 40 40 H 1.08996 * 110.97382 * 282.45382 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0041 -0.7997 -1.3680 7 1 3.7187 -1.2690 -2.2979 8 6 4.3997 -1.5793 -0.2898 9 7 4.0496 -2.8466 -0.2304 10 14 5.4292 -0.8297 1.0768 11 1 4.5403 -0.3930 2.1833 12 1 6.3907 -1.8414 1.5840 13 1 6.1749 0.3413 0.5494 14 16 4.4452 1.5131 -2.5263 15 8 4.1440 0.7796 -3.7055 16 8 3.9339 2.8136 -2.2681 17 6 6.2009 1.6462 -2.4580 18 6 6.9710 1.1057 -3.4672 19 6 8.3490 1.2076 -3.4253 20 6 8.9585 1.8485 -2.3609 21 6 8.1919 2.3874 -1.3519 22 6 6.8063 2.2916 -1.3829 23 8 6.2472 2.8741 -0.2869 24 6 7.2001 3.7679 0.3131 25 6 8.5568 3.1422 -0.0883 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9784 2.1766 0.0889 33 1 4.3257 -3.3913 0.5232 34 1 6.4945 0.6037 -4.2963 35 1 8.9480 0.7849 -4.2183 36 1 10.0350 1.9263 -2.3217 37 1 7.1007 4.7719 -0.0993 38 1 7.0848 3.7843 1.3969 39 1 9.2961 3.9157 -0.2963 40 1 8.9152 2.4610 0.6834 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421230757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:24 Heat of formation + Delta-G solvation = -97.069192 kcal Electronic energy + Delta-G solvation = -27802.741647 eV Core-core repulsion = 23904.475791 eV Total energy + Delta-G solvation = -3898.265856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85034 -37.48983 -37.12833 -35.74559 -35.42717 -34.41950 -32.55669 -32.12131 -29.86563 -29.00519 -28.95933 -25.76764 -24.16429 -23.47435 -22.27767 -22.14575 -21.62893 -18.23709 -17.57308 -17.11819 -16.84109 -16.29887 -16.11870 -15.95762 -15.58077 -15.34813 -14.72187 -14.58217 -14.26419 -13.99157 -13.42585 -13.09343 -12.97005 -12.94150 -12.84298 -12.49268 -12.12695 -12.04443 -11.78188 -11.70202 -11.54296 -11.23051 -10.90508 -10.86938 -10.74479 -10.70172 -10.69150 -10.47160 -10.08677 -9.96817 -9.66865 -9.04629 -8.86713 -8.81236 -8.09197 -7.91399 -6.58216 -3.98733 1.29796 1.61924 1.74571 3.07945 3.20313 3.28451 3.42229 3.79051 4.09446 4.26731 4.46869 4.53318 4.66895 4.83525 4.94291 5.00327 5.10125 5.32703 5.38125 5.44448 5.61664 5.67864 5.73011 5.76167 5.82859 5.87509 5.92794 5.97790 5.97996 6.14374 6.20389 6.25660 6.45963 6.49080 6.57637 6.66891 6.82893 7.01891 7.38490 7.51230 7.94079 8.31507 8.95895 9.02457 10.47832 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.006494 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.727395 B = 4310.949244 C = 4508.146018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.054 3.946 4 C 0.123 3.877 5 N -0.815 5.815 6 C -0.225 4.225 7 H 0.122 0.878 8 C 0.076 3.924 9 N -0.818 5.818 10 Si 0.872 3.128 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.249 1.249 14 S 2.529 3.471 15 O -0.977 6.977 16 O -1.001 7.001 17 C -0.668 4.668 18 C 0.002 3.998 19 C -0.174 4.174 20 C -0.041 4.041 21 C -0.206 4.206 22 C 0.197 3.803 23 O -0.294 6.294 24 C 0.049 3.951 25 C -0.106 4.106 26 H 0.081 0.919 27 H 0.028 0.972 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.279 0.721 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 8.779 3.494 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.025 4.025 4 C -0.004 4.004 5 N -0.639 5.639 6 C -0.375 4.375 7 H 0.139 0.861 8 C -0.141 4.141 9 N -0.455 5.455 10 Si 0.699 3.301 11 H -0.196 1.196 12 H -0.217 1.217 13 H -0.172 1.172 14 S 2.631 3.369 15 O -0.967 6.967 16 O -0.991 6.991 17 C -0.746 4.746 18 C -0.017 4.017 19 C -0.193 4.193 20 C -0.059 4.059 21 C -0.208 4.208 22 C 0.150 3.850 23 O -0.207 6.207 24 C -0.026 4.026 25 C -0.143 4.143 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.600 9.144 2.900 11.107 hybrid contribution 1.414 0.402 1.094 1.833 sum 7.014 9.545 3.994 12.500 Atomic orbital electron populations 1.22670 0.83175 1.02113 0.98680 1.88245 1.17509 1.26266 1.94984 1.22907 0.94577 0.85462 0.99531 1.21447 0.92519 0.98174 0.88232 1.53841 1.66245 1.15106 1.28671 1.19260 1.37521 0.77933 1.02833 0.86108 1.25705 0.95060 0.94869 0.98434 1.69818 1.38291 1.06801 1.30594 0.86996 0.80791 0.80164 0.82141 1.19579 1.21658 1.17221 1.11746 0.74456 0.73693 0.76981 1.93355 1.83204 1.71988 1.48131 1.93335 1.78874 1.41338 1.85524 1.31262 1.32940 1.11592 0.98795 1.20762 0.93393 0.91921 0.95631 1.21110 0.95068 1.03500 0.99650 1.20331 0.98943 0.94577 0.92076 1.20763 0.94001 1.07412 0.98591 1.18785 0.90876 0.89906 0.85430 1.86890 1.40358 1.56015 1.37401 1.23863 0.86069 0.93281 0.99424 1.21739 0.98202 0.99301 0.95061 0.90072 0.95349 0.94802 0.93575 0.93072 0.91599 0.88897 0.91067 0.83809 0.85377 0.86068 0.90325 0.87543 0.89349 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.61 9.95 -35.23 -0.35 -7.96 16 3 C 0.05 1.09 6.28 37.16 0.23 1.32 16 4 C 0.12 2.69 4.76 -4.04 -0.02 2.67 16 5 N -0.82 -19.85 2.46 -59.91 -0.15 -20.00 16 6 C -0.23 -5.94 8.86 -15.06 -0.13 -6.07 16 7 H 0.12 3.46 7.67 -52.49 -0.40 3.06 16 8 C 0.08 1.96 5.34 -17.43 -0.09 1.87 16 9 N -0.82 -21.93 13.97 55.49 0.78 -21.15 16 10 Si 0.87 19.90 24.97 -169.99 -4.24 15.66 16 11 H -0.27 -5.91 6.70 56.52 0.38 -5.53 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.25 -5.59 6.52 56.52 0.37 -5.22 16 14 S 2.53 61.54 5.50 -107.50 -0.59 60.95 16 15 O -0.98 -25.75 16.02 -57.17 -0.92 -26.66 16 16 O -1.00 -25.05 16.71 -57.17 -0.96 -26.00 16 17 C -0.67 -14.63 5.93 -39.30 -0.23 -14.86 16 18 C 0.00 0.04 9.52 -39.68 -0.38 -0.34 16 19 C -0.17 -2.81 10.07 -39.52 -0.40 -3.20 16 20 C -0.04 -0.62 10.03 -39.72 -0.40 -1.02 16 21 C -0.21 -3.47 6.27 -104.10 -0.65 -4.12 16 22 C 0.20 3.99 6.33 -38.95 -0.25 3.74 16 23 O -0.29 -5.59 9.51 -20.14 -0.19 -5.78 16 24 C 0.05 0.64 8.01 38.05 0.30 0.95 16 25 C -0.11 -1.33 7.12 -26.52 -0.19 -1.52 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.46 3.03 -51.93 -0.16 1.31 16 32 H 0.09 1.90 6.09 -51.93 -0.32 1.59 16 33 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.14 2.71 7.30 -52.48 -0.38 2.32 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -33.02 340.74 -7.68 -40.70 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.10 Total: 4.09 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.09 Total: -18.98 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.63 Total: -41.15 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -2.41 Total: -66.41 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.24 Total: 15.66 kcal Atomic # 16 Polarization: 61.54 SS G_CDS: -0.59 Total: 60.95 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.02 -7.68 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421230757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.373 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds