Wall clock time and date at job start Fri Apr 10 2020 18:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99834 * 2 1 4 4 C 1.52996 * 109.46913 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47297 * 65.00199 * 4 3 2 6 6 C 1.36935 * 119.99643 * 274.72411 * 5 4 3 7 7 H 1.08002 * 119.99560 * 141.93163 * 6 5 4 8 8 C 1.38812 * 120.00232 * 321.93033 * 6 5 4 9 9 N 1.31615 * 120.00136 * 158.94935 * 8 6 5 10 10 Si 1.86800 * 119.99897 * 338.94617 * 8 6 5 11 11 H 1.48498 * 109.46779 * 95.36751 * 10 8 6 12 12 H 1.48500 * 109.47075 * 215.37041 * 10 8 6 13 13 H 1.48501 * 109.46936 * 335.37309 * 10 8 6 14 14 S 1.65601 * 120.00040 * 94.99430 * 5 4 3 15 15 O 1.42098 * 106.40083 * 209.52898 * 14 5 4 16 16 O 1.42098 * 106.40509 * 342.45171 * 14 5 4 17 17 C 1.76204 * 107.21690 * 95.99152 * 14 5 4 18 18 C 1.37967 * 119.88247 * 114.91403 * 17 14 5 19 19 C 1.38238 * 120.35378 * 179.82211 * 18 17 14 20 20 C 1.38396 * 119.76821 * 0.38826 * 19 18 17 21 21 C 1.37694 * 119.97251 * 359.68661 * 20 19 18 22 22 C 1.38924 * 120.79368 * 0.30321 * 21 20 19 23 23 O 1.36126 * 111.23696 * 179.28876 * 22 21 20 24 24 C 1.43768 * 109.25818 * 18.86147 * 23 22 21 25 25 C 1.51647 * 132.17566 * 180.54345 * 21 20 19 26 26 H 1.09006 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46798 * 299.99808 * 1 2 3 28 28 H 1.08997 * 109.47368 * 59.99850 * 1 2 3 29 29 H 1.09002 * 109.46741 * 60.00147 * 3 2 1 30 30 H 1.09004 * 109.47023 * 300.00172 * 3 2 1 31 31 H 1.08998 * 109.47176 * 304.99769 * 4 3 2 32 32 H 1.08999 * 109.47044 * 185.00050 * 4 3 2 33 33 H 0.97000 * 120.00177 * 180.02562 * 9 8 6 34 34 H 1.08006 * 119.82416 * 0.07191 * 18 17 14 35 35 H 1.08001 * 120.11914 * 180.12321 * 19 18 17 36 36 H 1.07996 * 120.01549 * 179.70818 * 20 19 18 37 37 H 1.08998 * 110.74825 * 90.65597 * 24 23 22 38 38 H 1.09003 * 110.74991 * 213.80886 * 24 23 22 39 39 H 1.09004 * 110.93993 * 46.12853 * 25 21 20 40 40 H 1.08996 * 110.97382 * 282.45382 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0041 -0.7997 -1.3680 7 1 3.7187 -1.2690 -2.2979 8 6 4.3997 -1.5793 -0.2898 9 7 4.0496 -2.8466 -0.2304 10 14 5.4292 -0.8297 1.0768 11 1 4.5403 -0.3930 2.1833 12 1 6.3907 -1.8414 1.5840 13 1 6.1749 0.3413 0.5494 14 16 4.4452 1.5131 -2.5263 15 8 4.1440 0.7796 -3.7055 16 8 3.9339 2.8136 -2.2681 17 6 6.2009 1.6462 -2.4580 18 6 6.9710 1.1057 -3.4672 19 6 8.3490 1.2076 -3.4253 20 6 8.9585 1.8485 -2.3609 21 6 8.1919 2.3874 -1.3519 22 6 6.8063 2.2916 -1.3829 23 8 6.2472 2.8741 -0.2869 24 6 7.2001 3.7679 0.3131 25 6 8.5568 3.1422 -0.0883 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9784 2.1766 0.0889 33 1 4.3257 -3.3913 0.5232 34 1 6.4945 0.6037 -4.2963 35 1 8.9480 0.7849 -4.2183 36 1 10.0350 1.9263 -2.3217 37 1 7.1007 4.7719 -0.0993 38 1 7.0848 3.7843 1.3969 39 1 9.2961 3.9157 -0.2963 40 1 8.9152 2.4610 0.6834 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421230757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:23 Heat of formation + Delta-G solvation = -122.520388 kcal Electronic energy + Delta-G solvation = -27803.845293 eV Core-core repulsion = 23904.475791 eV Total energy + Delta-G solvation = -3899.369502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.11439 -39.11194 -38.48894 -37.80157 -37.17877 -36.53066 -33.99863 -33.77176 -31.22822 -30.63651 -30.19454 -27.23669 -26.03987 -24.68744 -23.84983 -23.56343 -22.94528 -20.14486 -19.24779 -18.74117 -18.37662 -17.99064 -17.61513 -17.43918 -16.98570 -16.96604 -16.31197 -16.02590 -15.93282 -15.66536 -14.81667 -14.80219 -14.56369 -14.39414 -14.01372 -13.90797 -13.72919 -13.65838 -13.19380 -13.12860 -12.87289 -12.82820 -12.75251 -12.67892 -12.48843 -12.38368 -12.30353 -11.95064 -11.81158 -11.68357 -11.34568 -10.84612 -10.41567 -10.24848 -9.94713 -9.23859 -8.47902 -6.00631 -0.27403 -0.01048 0.27833 1.26490 1.36207 1.49240 2.17872 2.24602 2.28600 2.57059 2.88756 3.03927 3.10243 3.38762 3.58052 3.73185 3.99149 4.10789 4.12784 4.16585 4.18315 4.37059 4.40958 4.41853 4.49464 4.55469 4.60261 4.63323 4.81806 4.85122 4.86133 4.89686 4.96424 5.09740 5.20855 5.22615 5.33410 5.57682 5.64875 6.07491 6.25684 6.48976 7.03167 7.10168 8.64000 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.006494 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.727395 B = 4310.949244 C = 4508.146018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.113 3.887 5 N -0.831 5.831 6 C -0.259 4.259 7 H 0.073 0.927 8 C 0.043 3.957 9 N -0.874 5.874 10 Si 0.922 3.078 11 H -0.256 1.256 12 H -0.289 1.289 13 H -0.242 1.242 14 S 2.580 3.420 15 O -1.007 7.007 16 O -1.008 7.008 17 C -0.705 4.705 18 C -0.024 4.024 19 C -0.167 4.167 20 C -0.027 4.027 21 C -0.208 4.208 22 C 0.175 3.825 23 O -0.323 6.323 24 C 0.034 3.966 25 C -0.098 4.098 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.281 0.719 34 H 0.135 0.865 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.455 11.770 4.974 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C -0.028 4.028 4 C -0.012 4.012 5 N -0.657 5.657 6 C -0.402 4.402 7 H 0.091 0.909 8 C -0.167 4.167 9 N -0.511 5.511 10 Si 0.747 3.253 11 H -0.182 1.182 12 H -0.216 1.216 13 H -0.165 1.165 14 S 2.684 3.316 15 O -0.998 6.998 16 O -0.998 6.998 17 C -0.790 4.790 18 C -0.044 4.044 19 C -0.185 4.185 20 C -0.045 4.045 21 C -0.210 4.210 22 C 0.127 3.873 23 O -0.236 6.236 24 C -0.040 4.040 25 C -0.134 4.134 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.184 0.816 36 H 0.190 0.810 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.844 12.044 4.432 15.586 hybrid contribution 0.513 -0.183 0.445 0.703 sum 9.357 11.862 4.877 15.876 Atomic orbital electron populations 1.22876 0.80905 1.03023 1.00398 1.88195 1.20220 1.27321 1.95309 1.22990 0.93587 0.85323 1.00927 1.21704 0.93977 0.98365 0.87194 1.53321 1.69212 1.14241 1.28935 1.18582 1.40961 0.78927 1.01761 0.90938 1.26084 0.95504 0.94981 1.00158 1.69903 1.40848 1.08332 1.32062 0.86206 0.79575 0.79481 0.80035 1.18188 1.21637 1.16534 1.08026 0.75283 0.72784 0.75482 1.93342 1.84492 1.72871 1.49057 1.93344 1.79891 1.40903 1.85646 1.30543 1.30079 1.16318 1.02088 1.20906 0.95486 0.92742 0.95228 1.21549 0.93488 1.02491 1.01009 1.20966 1.01415 0.91757 0.90329 1.21395 0.92467 1.06776 1.00320 1.19037 0.92793 0.90169 0.85311 1.86844 1.42789 1.56942 1.37050 1.24365 0.85500 0.93036 1.01055 1.21884 0.98551 0.99993 0.93013 0.89720 0.92275 0.94268 0.89628 0.94003 0.91770 0.87640 0.90921 0.84737 0.81571 0.81022 0.88828 0.84574 0.85525 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 11.01 113.37 1.25 2.06 16 2 O -0.39 -17.38 9.95 -148.98 -1.48 -18.86 16 3 C 0.05 2.03 6.28 71.98 0.45 2.48 16 4 C 0.11 4.99 4.76 86.38 0.41 5.40 16 5 N -0.83 -41.95 2.46 -343.46 -0.85 -42.80 16 6 C -0.26 -14.58 8.86 84.03 0.74 -13.84 16 7 H 0.07 4.62 7.67 -2.91 -0.02 4.60 16 8 C 0.04 2.37 5.34 84.86 0.45 2.82 16 9 N -0.87 -49.91 13.97 21.65 0.30 -49.61 16 10 Si 0.92 41.68 24.97 68.60 1.71 43.39 16 11 H -0.26 -10.84 6.70 99.48 0.67 -10.18 16 12 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.24 -10.54 6.52 99.48 0.65 -9.89 16 14 S 2.58 129.08 5.50 -56.49 -0.31 128.77 16 15 O -1.01 -55.90 16.02 -128.00 -2.05 -57.95 16 16 O -1.01 -50.76 16.71 -128.00 -2.14 -52.90 16 17 C -0.71 -30.69 5.93 22.45 0.13 -30.55 16 18 C -0.02 -0.94 9.52 22.21 0.21 -0.73 16 19 C -0.17 -4.77 10.07 22.31 0.22 -4.55 16 20 C -0.03 -0.67 10.03 22.18 0.22 -0.45 16 21 C -0.21 -6.05 6.27 -19.53 -0.12 -6.17 16 22 C 0.17 6.68 6.33 22.68 0.14 6.82 16 23 O -0.32 -11.46 9.51 -94.98 -0.90 -12.36 16 24 C 0.03 0.75 8.01 72.56 0.58 1.33 16 25 C -0.10 -1.89 7.12 30.73 0.22 -1.67 16 26 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 2.85 3.03 -2.39 -0.01 2.84 16 32 H 0.11 4.26 6.09 -2.39 -0.01 4.25 16 33 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.13 5.23 7.30 -2.91 -0.02 5.21 16 35 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -78.04 340.74 0.17 -77.87 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.96 Total: 21.52 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 4.92 Total: -37.06 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -0.54 Total: -92.41 kcal Atomic # 8 Polarization: -135.51 SS G_CDS: -6.57 Total: -142.08 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.71 Total: 43.39 kcal Atomic # 16 Polarization: 129.08 SS G_CDS: -0.31 Total: 128.77 kcal Total: -78.04 0.17 -77.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421230757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.649 kcal (2) G-P(sol) polarization free energy of solvation -78.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds