Wall clock time and date at job start Fri Apr 10 2020 18:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00217 * 2 1 4 4 S 1.65594 * 120.00065 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.40177 * 341.42908 * 4 2 1 6 6 O 1.42098 * 106.40462 * 208.50934 * 4 2 1 7 7 N 1.65599 * 107.22124 * 94.96330 * 4 2 1 8 8 C 1.36941 * 120.00268 * 181.72240 * 7 4 2 9 9 H 1.07991 * 120.00145 * 175.02749 * 8 7 4 10 10 C 1.38815 * 119.99892 * 355.03142 * 8 7 4 11 11 N 1.31616 * 119.99920 * 5.32507 * 10 8 7 12 12 Si 1.86790 * 120.00001 * 185.32889 * 10 8 7 13 13 H 1.48501 * 109.47264 * 89.99928 * 12 10 8 14 14 H 1.48501 * 109.47238 * 209.99807 * 12 10 8 15 15 H 1.48506 * 109.47358 * 329.99859 * 12 10 8 16 16 C 1.46498 * 120.00029 * 1.72996 * 7 4 2 17 17 C 1.50698 * 109.47358 * 184.79783 * 16 7 4 18 18 C 1.37912 * 120.06326 * 261.05925 * 17 16 7 19 19 C 1.38403 * 120.21670 * 180.25511 * 18 17 16 20 20 C 1.38275 * 120.34534 * 359.78639 * 19 18 17 21 21 C 1.38233 * 120.12715 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.11306 * 179.97438 * 21 20 19 23 23 C 1.39651 * 120.06358 * 80.84317 * 17 16 7 24 24 C 1.43198 * 120.16872 * 0.02562 * 23 17 16 25 25 N 4.93548 * 67.78195 * 227.15061 * 2 1 3 26 26 H 1.08995 * 109.46768 * 269.99666 * 1 2 3 27 27 H 1.09005 * 109.46917 * 29.99416 * 1 2 3 28 28 H 1.08995 * 109.46921 * 149.99519 * 1 2 3 29 29 H 1.09002 * 109.47566 * 184.71649 * 3 2 1 30 30 H 1.08999 * 109.47736 * 304.71825 * 3 2 1 31 31 H 1.09006 * 109.47365 * 64.71533 * 3 2 1 32 32 H 0.97001 * 120.00390 * 179.97438 * 11 10 8 33 33 H 1.09004 * 109.47509 * 64.79562 * 16 7 4 34 34 H 1.09008 * 109.47003 * 304.79682 * 16 7 4 35 35 H 1.07996 * 119.89223 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.83050 * 179.76495 * 19 18 17 37 37 H 1.08005 * 119.94127 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3746 -2.4279 0.4331 6 8 3.5310 -1.1830 0.6501 7 7 2.6567 -1.7895 -1.5766 8 6 3.3161 -2.9501 -1.8822 9 1 3.4823 -3.2211 -2.9143 10 6 3.7709 -3.7784 -0.8653 11 7 3.4780 -3.5034 0.3880 12 14 4.7987 -5.2832 -1.2756 13 1 6.2370 -4.9140 -1.2803 14 1 4.5616 -6.3374 -0.2570 15 1 4.4145 -5.7946 -2.6159 16 6 2.2731 -0.8623 -2.6440 17 6 2.6105 -1.4687 -3.9816 18 6 3.7683 -1.1012 -4.6346 19 6 4.0786 -1.6522 -5.8657 20 6 3.2340 -2.5784 -6.4494 21 6 2.0722 -2.9608 -5.8052 22 9 1.2469 -3.8653 -6.3760 23 6 1.7536 -2.4074 -4.5603 24 6 0.5518 -2.7967 -3.8860 25 7 -0.4012 -3.1073 -3.3498 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 3.2662 1.0713 -0.0845 30 1 1.8725 1.8761 -0.8447 31 1 1.9992 1.8029 0.9292 32 1 3.7954 -4.0823 1.0987 33 1 2.8154 0.0755 -2.5230 34 1 1.2011 -0.6714 -2.5916 35 1 4.4331 -0.3782 -4.1855 36 1 4.9850 -1.3570 -6.3732 37 1 3.4828 -3.0046 -7.4101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427521816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:33 Heat of formation + Delta-G solvation = -24.709646 kcal Electronic energy + Delta-G solvation = -27107.811440 eV Core-core repulsion = 23121.515775 eV Total energy + Delta-G solvation = -3986.295664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.084 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -48.90805 -39.49575 -36.00669 -35.57496 -35.52067 -35.18823 -33.89151 -32.25494 -30.97172 -30.28587 -27.61097 -26.43118 -24.32659 -23.79774 -23.39363 -21.38440 -19.05596 -18.70529 -17.25890 -17.08714 -16.67874 -16.20940 -15.65611 -15.15047 -15.10148 -14.95229 -14.71802 -14.02966 -13.90305 -13.77088 -13.41536 -13.19808 -13.02684 -12.76502 -12.48625 -12.42540 -12.24134 -12.10884 -11.89083 -11.71091 -11.59723 -11.41290 -11.23340 -11.06473 -10.86301 -10.31073 -10.10273 -10.08194 -9.97314 -9.56942 -9.41807 -8.79343 -8.64189 -8.48525 -7.90443 -6.41677 -3.82095 0.80248 1.20122 2.09660 3.06989 3.18183 3.29039 3.30012 3.36126 3.87178 4.11526 4.20372 4.24309 4.40074 4.71024 4.88897 5.14136 5.16758 5.22615 5.25949 5.58509 5.61267 5.64309 5.73634 5.79279 5.84695 5.94348 5.97873 6.06153 6.09321 6.17290 6.28086 6.36170 6.42775 6.52797 6.79554 7.15378 7.47823 7.56857 7.90996 8.37220 8.97867 9.43571 10.80917 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.006919 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.503999 B = 4046.030247 C = 4988.640718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.045 6.045 3 C 0.093 3.907 4 S 2.834 3.166 5 O -0.975 6.975 6 O -0.973 6.973 7 N -0.892 5.892 8 C -0.276 4.276 9 H 0.098 0.902 10 C -0.009 4.009 11 N -0.912 5.912 12 Si 0.951 3.049 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.273 1.273 16 C 0.162 3.838 17 C 0.019 3.981 18 C -0.114 4.114 19 C -0.066 4.066 20 C -0.162 4.162 21 C 0.137 3.863 22 F -0.133 7.133 23 C -0.041 4.041 24 C 0.257 3.743 25 N -0.399 5.399 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.293 0.707 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 9.531 -12.018 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.883 5.883 3 C -0.053 4.053 4 S 2.842 3.158 5 O -0.956 6.956 6 O -0.955 6.955 7 N -0.726 5.726 8 C -0.406 4.406 9 H 0.115 0.885 10 C -0.208 4.208 11 N -0.563 5.563 12 Si 0.778 3.222 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.035 3.965 17 C 0.015 3.985 18 C -0.133 4.133 19 C -0.085 4.085 20 C -0.181 4.181 21 C 0.116 3.884 22 F -0.111 7.111 23 C -0.046 4.046 24 C -0.059 4.059 25 N -0.074 5.074 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.597 8.436 -10.226 13.270 hybrid contribution 0.575 -0.626 -0.633 1.059 sum -0.022 7.810 -10.859 13.376 Atomic orbital electron populations 1.21243 0.80123 1.01984 1.01290 1.58839 1.14837 1.23905 1.90741 1.21352 0.97016 0.86254 1.00725 1.00860 0.73167 0.69381 0.72354 1.93415 1.67047 1.55480 1.79664 1.93423 1.44388 1.85202 1.72479 1.53861 1.70778 1.27430 1.20525 1.19112 1.30334 0.96605 0.94576 0.88455 1.25113 1.00006 1.01116 0.94548 1.68067 1.47606 1.41047 0.99547 0.85487 0.79197 0.79642 0.77830 1.20391 1.20868 1.19846 1.20086 0.98601 0.92728 0.85115 1.19724 0.92255 0.92157 0.94338 1.21064 0.95900 1.01520 0.94819 1.21147 0.98416 0.94255 0.94700 1.20977 0.93919 1.01300 1.01932 1.17579 0.89935 0.89820 0.91105 1.91517 1.71039 1.64536 1.84008 1.15864 0.92895 1.02167 0.93689 1.25125 0.92680 0.94382 0.93727 1.81186 1.12167 1.06942 1.07092 0.93433 0.92319 0.91327 0.90232 0.93175 0.93209 0.89340 0.91922 0.92805 0.84116 0.84410 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 10.35 59.85 0.62 2.30 16 2 N -1.04 -20.18 2.72 -129.20 -0.35 -20.53 16 3 C 0.09 1.41 10.42 59.84 0.62 2.03 16 4 S 2.83 73.00 4.03 -107.50 -0.43 72.57 16 5 O -0.97 -29.09 15.27 -57.17 -0.87 -29.96 16 6 O -0.97 -27.81 15.03 -57.17 -0.86 -28.67 16 7 N -0.89 -21.15 3.34 -61.08 -0.20 -21.36 16 8 C -0.28 -7.13 9.12 -15.06 -0.14 -7.27 16 9 H 0.10 2.32 5.63 -52.49 -0.30 2.02 16 10 C -0.01 -0.26 5.39 -17.43 -0.09 -0.35 16 11 N -0.91 -27.86 7.46 55.49 0.41 -27.45 16 12 Si 0.95 22.26 29.56 -169.99 -5.02 17.23 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.16 2.89 5.14 -5.20 -0.03 2.86 16 17 C 0.02 0.31 3.37 -104.21 -0.35 -0.05 16 18 C -0.11 -1.41 9.61 -39.64 -0.38 -1.80 16 19 C -0.07 -0.67 10.04 -39.51 -0.40 -1.06 16 20 C -0.16 -1.79 10.01 -39.57 -0.40 -2.18 16 21 C 0.14 1.98 7.28 -38.96 -0.28 1.70 16 22 F -0.13 -2.01 16.81 2.25 0.04 -1.97 16 23 C -0.04 -0.70 4.91 -106.82 -0.52 -1.22 16 24 C 0.26 5.09 13.63 -22.45 -0.31 4.78 16 25 N -0.40 -8.67 18.54 41.87 0.78 -7.89 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 29 H 0.08 1.28 7.15 -51.93 -0.37 0.91 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.29 8.72 8.31 -40.82 -0.34 8.38 16 33 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 34 H 0.05 0.93 7.39 -51.92 -0.38 0.54 16 35 H 0.14 1.47 8.04 -52.49 -0.42 1.05 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -37.42 333.97 -7.08 -44.50 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.94 Total: -1.25 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.65 Total: -0.25 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: 0.63 Total: -77.23 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -1.73 Total: -58.63 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 73.00 SS G_CDS: -0.43 Total: 72.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.42 -7.08 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427521816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.792 kcal (2) G-P(sol) polarization free energy of solvation -37.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds