Wall clock time and date at job start Fri Apr 10 2020 18:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00217 * 2 1 4 4 S 1.65594 * 120.00065 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.40177 * 341.42908 * 4 2 1 6 6 O 1.42098 * 106.40462 * 208.50934 * 4 2 1 7 7 N 1.65599 * 107.22124 * 94.96330 * 4 2 1 8 8 C 1.36941 * 120.00268 * 181.72240 * 7 4 2 9 9 H 1.07991 * 120.00145 * 175.02749 * 8 7 4 10 10 C 1.38815 * 119.99892 * 355.03142 * 8 7 4 11 11 N 1.31616 * 119.99920 * 5.32507 * 10 8 7 12 12 Si 1.86790 * 120.00001 * 185.32889 * 10 8 7 13 13 H 1.48501 * 109.47264 * 89.99928 * 12 10 8 14 14 H 1.48501 * 109.47238 * 209.99807 * 12 10 8 15 15 H 1.48506 * 109.47358 * 329.99859 * 12 10 8 16 16 C 1.46498 * 120.00029 * 1.72996 * 7 4 2 17 17 C 1.50698 * 109.47358 * 184.79783 * 16 7 4 18 18 C 1.37912 * 120.06326 * 261.05925 * 17 16 7 19 19 C 1.38403 * 120.21670 * 180.25511 * 18 17 16 20 20 C 1.38275 * 120.34534 * 359.78639 * 19 18 17 21 21 C 1.38233 * 120.12715 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.11306 * 179.97438 * 21 20 19 23 23 C 1.39651 * 120.06358 * 80.84317 * 17 16 7 24 24 C 1.43198 * 120.16872 * 0.02562 * 23 17 16 25 25 N 4.93548 * 67.78195 * 227.15061 * 2 1 3 26 26 H 1.08995 * 109.46768 * 269.99666 * 1 2 3 27 27 H 1.09005 * 109.46917 * 29.99416 * 1 2 3 28 28 H 1.08995 * 109.46921 * 149.99519 * 1 2 3 29 29 H 1.09002 * 109.47566 * 184.71649 * 3 2 1 30 30 H 1.08999 * 109.47736 * 304.71825 * 3 2 1 31 31 H 1.09006 * 109.47365 * 64.71533 * 3 2 1 32 32 H 0.97001 * 120.00390 * 179.97438 * 11 10 8 33 33 H 1.09004 * 109.47509 * 64.79562 * 16 7 4 34 34 H 1.09008 * 109.47003 * 304.79682 * 16 7 4 35 35 H 1.07996 * 119.89223 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.83050 * 179.76495 * 19 18 17 37 37 H 1.08005 * 119.94127 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3746 -2.4279 0.4331 6 8 3.5310 -1.1830 0.6501 7 7 2.6567 -1.7895 -1.5766 8 6 3.3161 -2.9501 -1.8822 9 1 3.4823 -3.2211 -2.9143 10 6 3.7709 -3.7784 -0.8653 11 7 3.4780 -3.5034 0.3880 12 14 4.7987 -5.2832 -1.2756 13 1 6.2370 -4.9140 -1.2803 14 1 4.5616 -6.3374 -0.2570 15 1 4.4145 -5.7946 -2.6159 16 6 2.2731 -0.8623 -2.6440 17 6 2.6105 -1.4687 -3.9816 18 6 3.7683 -1.1012 -4.6346 19 6 4.0786 -1.6522 -5.8657 20 6 3.2340 -2.5784 -6.4494 21 6 2.0722 -2.9608 -5.8052 22 9 1.2469 -3.8653 -6.3760 23 6 1.7536 -2.4074 -4.5603 24 6 0.5518 -2.7967 -3.8860 25 7 -0.4012 -3.1073 -3.3498 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 3.2662 1.0713 -0.0845 30 1 1.8725 1.8761 -0.8447 31 1 1.9992 1.8029 0.9292 32 1 3.7954 -4.0823 1.0987 33 1 2.8154 0.0755 -2.5230 34 1 1.2011 -0.6714 -2.5916 35 1 4.4331 -0.3782 -4.1855 36 1 4.9850 -1.3570 -6.3732 37 1 3.4828 -3.0046 -7.4101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427521816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:32 Heat of formation + Delta-G solvation = -52.105549 kcal Electronic energy + Delta-G solvation = -27108.999415 eV Core-core repulsion = 23121.515775 eV Total energy + Delta-G solvation = -3987.483640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.084 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.02031 -40.63203 -37.46772 -37.28267 -37.24739 -37.00483 -35.92880 -33.97104 -32.20947 -31.57698 -28.92593 -28.03260 -25.87740 -25.25329 -24.58057 -22.63248 -20.89245 -19.93797 -18.98520 -18.55437 -17.93097 -17.53595 -16.91555 -16.80311 -16.72318 -16.55443 -15.90962 -15.54775 -15.35034 -15.31144 -14.89735 -14.72294 -14.43325 -14.11854 -14.04501 -13.90362 -13.70911 -13.48251 -13.36197 -13.07216 -12.96662 -12.86745 -12.71908 -12.63350 -12.23668 -12.19481 -12.10705 -12.01396 -11.90920 -11.44352 -11.29323 -9.96840 -9.91517 -9.83925 -9.66291 -8.46297 -5.87653 -0.31067 0.10941 0.33319 1.40075 1.47011 1.54499 1.59715 1.94931 2.34844 2.58926 2.80254 2.97089 3.07291 3.13125 3.50529 3.68700 3.91329 4.16250 4.20542 4.24583 4.33576 4.38741 4.48734 4.53214 4.70925 4.73242 4.75090 4.83267 4.88579 4.95843 5.01561 5.13496 5.36758 5.40801 5.47869 5.58433 5.87389 5.91415 6.32603 6.43909 7.06731 7.41332 8.74570 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.006919 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.503999 B = 4046.030247 C = 4988.640718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.042 6.042 3 C 0.083 3.917 4 S 2.842 3.158 5 O -1.034 7.034 6 O -1.015 7.015 7 N -0.901 5.901 8 C -0.256 4.256 9 H 0.119 0.881 10 C -0.086 4.086 11 N -0.958 5.958 12 Si 1.003 2.997 13 H -0.262 1.262 14 H -0.299 1.299 15 H -0.252 1.252 16 C 0.150 3.850 17 C -0.003 4.003 18 C -0.110 4.110 19 C -0.040 4.040 20 C -0.143 4.143 21 C 0.125 3.875 22 F -0.143 7.143 23 C -0.076 4.076 24 C 0.268 3.732 25 N -0.458 5.458 26 H 0.051 0.949 27 H 0.108 0.892 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.280 0.720 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.165 0.835 36 H 0.189 0.811 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 11.590 -15.822 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.884 5.884 3 C -0.061 4.061 4 S 2.852 3.148 5 O -1.015 7.015 6 O -0.996 6.996 7 N -0.736 5.736 8 C -0.387 4.387 9 H 0.136 0.864 10 C -0.278 4.278 11 N -0.612 5.612 12 Si 0.827 3.173 13 H -0.187 1.187 14 H -0.225 1.225 15 H -0.176 1.176 16 C 0.024 3.976 17 C -0.007 4.007 18 C -0.128 4.128 19 C -0.059 4.059 20 C -0.162 4.162 21 C 0.103 3.897 22 F -0.121 7.121 23 C -0.081 4.081 24 C -0.046 4.046 25 N -0.134 5.134 26 H 0.069 0.931 27 H 0.126 0.874 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.182 0.818 36 H 0.206 0.794 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.564 10.529 -14.073 17.646 hybrid contribution -0.125 -1.079 0.365 1.146 sum 1.439 9.450 -13.708 16.712 Atomic orbital electron populations 1.21421 0.78524 1.03005 1.01967 1.58294 1.15767 1.23682 1.90695 1.21692 0.96004 0.84682 1.03753 1.00077 0.72211 0.69746 0.72808 1.93334 1.68171 1.58810 1.81223 1.93351 1.46342 1.85956 1.73986 1.53764 1.70391 1.27910 1.21552 1.19588 1.27596 0.96449 0.95035 0.86357 1.26195 1.02323 1.04775 0.94512 1.68296 1.50086 1.42315 1.00524 0.84693 0.78473 0.76107 0.77991 1.18704 1.22524 1.17589 1.20431 0.99125 0.93060 0.84949 1.19667 0.93968 0.93166 0.93866 1.21441 0.94392 1.01492 0.95491 1.21727 0.99109 0.91814 0.93201 1.21481 0.91790 1.00208 1.02724 1.17896 0.91097 0.89989 0.90671 1.91495 1.71682 1.64971 1.83993 1.16130 0.92439 1.04301 0.95186 1.25906 0.92941 0.93018 0.92744 1.81173 1.14131 1.09137 1.08937 0.93076 0.87363 0.94095 0.91483 0.88570 0.91458 0.90850 0.88333 0.92994 0.81752 0.79394 0.80442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.19 10.35 127.77 1.32 4.52 16 2 N -1.04 -39.84 2.72 -562.68 -1.53 -41.38 16 3 C 0.08 2.33 10.42 127.77 1.33 3.67 16 4 S 2.84 151.09 4.03 -56.49 -0.23 150.86 16 5 O -1.03 -65.47 15.27 -128.00 -1.95 -67.43 16 6 O -1.01 -60.15 15.03 -128.00 -1.92 -62.08 16 7 N -0.90 -42.91 3.34 -347.17 -1.16 -44.07 16 8 C -0.26 -13.21 9.12 84.03 0.77 -12.44 16 9 H 0.12 5.46 5.63 -2.92 -0.02 5.44 16 10 C -0.09 -4.89 5.39 84.86 0.46 -4.44 16 11 N -0.96 -61.51 7.46 21.65 0.16 -61.34 16 12 Si 1.00 45.87 29.56 68.60 2.03 47.89 16 13 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 14 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 15 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 16 C 0.15 5.13 5.14 85.63 0.44 5.57 16 17 C 0.00 -0.08 3.37 -19.60 -0.07 -0.14 16 18 C -0.11 -2.16 9.61 22.23 0.21 -1.94 16 19 C -0.04 -0.54 10.04 22.32 0.22 -0.31 16 20 C -0.14 -2.35 10.01 22.28 0.22 -2.13 16 21 C 0.13 3.27 7.28 22.67 0.17 3.44 16 22 F -0.14 -4.12 16.81 44.97 0.76 -3.36 16 23 C -0.08 -2.44 4.91 -21.29 -0.10 -2.55 16 24 C 0.27 10.89 13.63 88.32 1.20 12.09 16 25 N -0.46 -20.90 18.54 19.01 0.35 -20.55 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.11 2.48 8.07 -2.38 -0.02 2.46 16 28 H 0.04 1.58 7.66 -2.39 -0.02 1.56 16 29 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.65 16 32 H 0.28 17.77 8.31 -92.71 -0.77 17.00 16 33 H 0.10 2.62 7.83 -2.39 -0.02 2.60 16 34 H 0.05 1.77 7.39 -2.38 -0.02 1.75 16 35 H 0.16 2.47 8.04 -2.91 -0.02 2.45 16 36 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -90.81 333.97 3.79 -87.02 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.11 Total: 9.11 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.18 Total: 5.32 kcal Atomic # 7 Polarization: -165.16 SS G_CDS: -2.18 Total: -167.34 kcal Atomic # 8 Polarization: -125.63 SS G_CDS: -3.88 Total: -129.50 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.76 Total: -3.36 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 151.09 SS G_CDS: -0.23 Total: 150.86 kcal Total: -90.81 3.79 -87.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427521816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.910 kcal (2) G-P(sol) polarization free energy of solvation -90.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds