Wall clock time and date at job start Fri Apr 10 2020 18:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38265 * 119.93826 * 269.72794 * 5 2 1 7 7 C 1.38150 * 120.05274 * 179.72608 * 6 5 2 8 8 C 1.38737 * 119.93984 * 0.56466 * 7 6 5 9 9 O 1.35898 * 120.05362 * 179.68459 * 8 7 6 10 10 C 1.42902 * 117.00054 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47222 * 180.02562 * 11 10 9 13 13 O 1.21275 * 119.99990 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00026 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00184 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47496 * 179.97438 * 15 14 12 17 17 H 1.08006 * 120.00143 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00436 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00253 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99782 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46627 * 90.00162 * 20 18 16 22 22 H 1.48499 * 109.47314 * 210.00065 * 20 18 16 23 23 H 1.48497 * 109.46940 * 330.00268 * 20 18 16 24 24 C 1.38725 * 119.88903 * 359.70500 * 8 7 6 25 25 C 1.38137 * 119.94698 * 0.02562 * 24 8 7 26 26 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 27 27 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 28 28 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 29 29 H 1.07992 * 119.97777 * 359.97438 * 6 5 2 30 30 H 1.07995 * 120.03154 * 180.25119 * 7 6 5 31 31 H 1.09000 * 109.47406 * 299.99777 * 10 9 8 32 32 H 1.08996 * 109.47318 * 59.99924 * 10 9 8 33 33 H 1.09007 * 109.47385 * 299.99764 * 11 10 9 34 34 H 1.09004 * 109.47441 * 59.99893 * 11 10 9 35 35 H 0.96998 * 120.00340 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.47168 * 300.00081 * 15 14 12 37 37 H 1.09004 * 109.46961 * 59.99494 * 15 14 12 38 38 H 0.97004 * 120.00115 * 179.97438 * 19 18 16 39 39 H 1.08007 * 120.02267 * 179.97438 * 24 8 7 40 40 H 1.08003 * 119.97413 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4314 -1.9883 -1.7646 7 6 2.7706 -2.4843 -3.0085 8 6 2.9444 -1.6159 -4.0764 9 8 3.2844 -2.1008 -5.2996 10 6 3.4462 -3.5160 -5.4144 11 6 3.8263 -3.8707 -6.8533 12 6 3.9963 -5.3632 -6.9746 13 8 3.8303 -6.0731 -6.0055 14 7 4.3339 -5.9089 -8.1598 15 6 4.4997 -7.3598 -8.2776 16 6 4.8740 -7.7093 -9.6948 17 1 4.9784 -6.9287 -10.4340 18 6 5.0842 -9.0253 -10.0479 19 7 5.4114 -9.3303 -11.2846 20 14 4.9058 -10.3753 -8.7691 21 1 3.5029 -10.8621 -8.7559 22 1 5.8166 -11.4990 -9.1050 23 1 5.2558 -9.8378 -7.4298 24 6 2.7710 -0.2517 -3.8934 25 6 2.4264 0.2387 -2.6489 26 1 -0.3633 -1.0167 -0.1497 27 1 -0.3633 0.6380 -0.8057 28 1 -0.3634 0.3787 0.9554 29 1 2.3011 -2.6633 -0.9318 30 1 2.9054 -3.5467 -3.1484 31 1 4.2344 -3.8476 -4.7386 32 1 2.5111 -4.0110 -5.1527 33 1 3.0384 -3.5391 -7.5297 34 1 4.7617 -3.3757 -7.1147 35 1 4.4671 -5.3411 -8.9349 36 1 5.2873 -7.6916 -7.6011 37 1 3.5643 -7.8547 -8.0166 38 1 5.5597 -10.2562 -11.5329 39 1 2.9062 0.4263 -4.7232 40 1 2.2908 1.3007 -2.5060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:39 Heat of formation + Delta-G solvation = -121.837761 kcal Electronic energy + Delta-G solvation = -23972.981261 eV Core-core repulsion = 20073.641359 eV Total energy + Delta-G solvation = -3899.339902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62048 -39.20753 -37.85862 -37.46573 -36.29213 -34.49785 -32.62414 -32.26351 -31.45240 -30.44606 -29.84149 -28.08510 -25.00283 -23.38388 -22.71021 -21.66964 -20.00081 -19.42156 -18.87530 -17.88836 -17.14212 -16.71167 -16.66270 -16.53317 -15.96153 -15.74707 -15.33505 -15.01495 -14.93739 -14.24411 -14.02972 -13.95257 -13.81367 -13.66219 -13.50516 -13.35953 -12.97778 -12.66138 -12.44764 -12.41315 -12.36628 -12.04989 -11.97881 -11.53083 -11.26058 -11.10084 -11.08779 -11.06447 -10.84276 -10.05205 -9.59688 -9.52625 -9.47203 -8.94640 -8.86410 -8.31733 -6.28672 -4.31904 -0.33048 0.53331 0.87426 2.47471 2.62688 2.99622 3.03150 3.20870 3.28065 3.35116 3.55876 3.71260 3.95847 4.25785 4.26393 4.29771 4.39133 4.48938 4.64430 4.78396 4.79171 4.96012 5.06350 5.09846 5.14604 5.14865 5.37691 5.45611 5.55161 5.58025 5.63554 5.70012 5.85176 6.24066 6.68075 6.93134 6.95651 7.05103 7.27941 7.99612 8.37621 8.62727 8.75414 9.30485 10.83102 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.001798 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.812634 B =15570.022741 C =16169.570512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.506 3.494 3 O -0.941 6.941 4 O -0.940 6.940 5 C -0.705 4.705 6 C 0.018 3.982 7 C -0.229 4.229 8 C 0.192 3.808 9 O -0.310 6.310 10 C 0.071 3.929 11 C -0.141 4.141 12 C 0.505 3.495 13 O -0.561 6.561 14 N -0.700 5.700 15 C 0.220 3.780 16 C -0.547 4.547 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.890 5.890 20 Si 0.878 3.122 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.261 1.261 24 C -0.175 4.175 25 C 0.012 3.988 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.399 0.601 36 H 0.027 0.973 37 H 0.022 0.978 38 H 0.268 0.732 39 H 0.141 0.859 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 21.393 19.026 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.686 3.314 3 O -0.938 6.938 4 O -0.937 6.937 5 C -0.792 4.792 6 C -0.001 4.001 7 C -0.249 4.249 8 C 0.145 3.855 9 O -0.222 6.222 10 C -0.003 4.003 11 C -0.181 4.181 12 C 0.290 3.710 13 O -0.442 6.442 14 N -0.348 5.348 15 C 0.098 3.902 16 C -0.585 4.585 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.194 4.194 25 C -0.007 4.007 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.233 0.767 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.234 21.034 19.999 30.776 hybrid contribution -0.443 -1.092 -0.676 1.359 sum -10.677 19.942 19.323 29.750 Atomic orbital electron populations 1.30243 1.25990 1.12114 1.11746 1.04922 0.77687 0.74532 0.74274 1.93580 1.77341 1.36676 1.86235 1.93587 1.77304 1.61662 1.61186 1.30304 1.23783 1.02926 1.22226 1.20745 0.89354 0.93118 0.96888 1.21544 1.08956 1.00944 0.93409 1.19337 0.88860 0.93246 0.84098 1.86035 1.82286 1.25831 1.28055 1.22629 1.02816 0.76970 0.97931 1.21498 1.05190 0.94847 0.96597 1.20110 0.77859 0.89071 0.83951 1.90674 1.52391 1.63443 1.37645 1.46170 1.67577 1.10772 1.10300 1.19538 0.96620 0.75905 0.98166 1.21073 1.49589 0.94537 0.93286 0.90175 1.24801 0.93855 0.98538 0.95419 1.69876 1.46176 1.19311 1.17356 0.86808 0.78713 0.81652 0.82452 1.19815 1.20812 1.18546 1.20571 1.07439 0.92631 0.98758 1.20715 0.90241 0.99372 0.90333 0.84971 0.84986 0.85130 0.83796 0.83888 0.90471 0.90492 0.87872 0.87840 0.76690 0.95542 0.96013 0.92167 0.84082 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.73 10.80 101.05 1.09 -0.64 16 2 S 2.51 16.91 5.80 -107.50 -0.62 16.29 16 3 O -0.94 -9.16 17.12 -57.54 -0.99 -10.15 16 4 O -0.94 -9.59 17.11 -57.54 -0.98 -10.58 16 5 C -0.70 -5.68 5.66 -39.56 -0.22 -5.90 16 6 C 0.02 0.16 9.46 -39.60 -0.37 -0.22 16 7 C -0.23 -2.27 9.04 -39.43 -0.36 -2.63 16 8 C 0.19 2.00 6.69 -39.22 -0.26 1.74 16 9 O -0.31 -3.43 10.14 -19.42 -0.20 -3.63 16 10 C 0.07 0.82 4.03 37.16 0.15 0.97 16 11 C -0.14 -1.66 6.07 -27.88 -0.17 -1.83 16 12 C 0.51 8.64 7.83 -10.98 -0.09 8.56 16 13 O -0.56 -11.59 15.98 5.56 0.09 -11.50 16 14 N -0.70 -13.18 5.55 -61.47 -0.34 -13.52 16 15 C 0.22 5.18 4.50 -5.19 -0.02 5.16 16 16 C -0.55 -14.57 9.83 -34.44 -0.34 -14.91 16 17 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 20 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 24 C -0.17 -1.55 9.99 -39.44 -0.39 -1.94 16 25 C 0.01 0.10 9.46 -39.61 -0.37 -0.28 16 26 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 27 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 28 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.14 1.02 7.56 -52.49 -0.40 0.63 16 30 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 31 H 0.08 0.91 7.62 -51.93 -0.40 0.52 16 32 H 0.08 0.88 7.62 -51.93 -0.40 0.49 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 6.51 8.32 -40.82 -0.34 6.17 16 36 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 37 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.15 0.82 7.57 -52.48 -0.40 0.43 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -36.80 357.37 -8.15 -44.95 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.14 Total: 1.51 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.46 Total: -9.87 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.43 Total: -38.67 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -2.08 Total: -35.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 16 Polarization: 16.91 SS G_CDS: -0.62 Total: 16.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.80 -8.15 -44.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.890 kcal (2) G-P(sol) polarization free energy of solvation -36.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds