Wall clock time and date at job start Fri Apr 10 2020 18:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00000 * 2 1 4 4 C 1.52995 * 109.47318 * 180.02562 * 3 2 1 5 5 S 1.81405 * 109.47313 * 179.97438 * 4 3 2 6 6 O 1.42102 * 110.53938 * 68.37230 * 5 4 3 7 7 O 1.42096 * 110.54219 * 291.61992 * 5 4 3 8 8 C 1.76195 * 104.44903 * 179.97438 * 5 4 3 9 9 C 1.38243 * 120.00028 * 90.00130 * 8 5 4 10 10 C 1.38236 * 119.99835 * 180.02562 * 9 8 5 11 11 C 1.38231 * 120.00189 * 0.02562 * 10 9 8 12 12 C 1.50705 * 119.99701 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47391 * 89.99740 * 12 11 10 14 14 C 1.34779 * 119.99811 * 179.97438 * 13 12 11 15 15 O 1.21692 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.46375 * 119.99917 * 179.97438 * 14 13 12 17 17 H 1.07999 * 120.00065 * 353.93908 * 16 14 13 18 18 C 1.40044 * 120.00144 * 173.93744 * 16 14 13 19 19 N 1.30675 * 119.99855 * 6.14912 * 18 16 14 20 20 Si 1.86801 * 120.00097 * 186.15103 * 18 16 14 21 21 H 1.48504 * 109.46864 * 94.98526 * 20 18 16 22 22 H 1.48499 * 109.46977 * 214.98357 * 20 18 16 23 23 H 1.48497 * 109.47248 * 334.98541 * 20 18 16 24 24 C 1.38234 * 120.00033 * 0.24778 * 11 10 9 25 25 C 1.38235 * 119.99930 * 359.50071 * 24 11 10 26 26 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47134 * 300.00493 * 1 2 3 28 28 H 1.09001 * 109.47313 * 60.00232 * 1 2 3 29 29 H 1.09001 * 109.47575 * 59.99672 * 3 2 1 30 30 H 1.09003 * 109.46777 * 299.99821 * 3 2 1 31 31 H 1.09001 * 109.47717 * 59.99493 * 4 3 2 32 32 H 1.09003 * 109.46872 * 299.99544 * 4 3 2 33 33 H 1.07992 * 119.99519 * 359.97438 * 9 8 5 34 34 H 1.08003 * 119.99937 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.46292 * 209.99739 * 12 11 10 36 36 H 1.09001 * 109.47049 * 329.99122 * 12 11 10 37 37 H 0.97003 * 119.99910 * 359.97438 * 13 12 11 38 38 H 0.97002 * 120.00207 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99553 * 179.72652 * 24 11 10 40 40 H 1.08004 * 119.99889 * 180.22557 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2732 2.8419 -0.0014 6 8 4.0285 3.4972 1.2355 7 8 4.0276 3.4965 -1.2385 8 6 6.0107 2.5496 -0.0013 9 6 6.6923 2.4344 -1.1985 10 6 8.0554 2.2045 -1.1984 11 6 8.7369 2.0893 -0.0013 12 6 10.2228 1.8381 -0.0013 13 7 10.9346 3.1185 -0.0013 14 6 12.2822 3.1404 -0.0008 15 8 12.9077 2.0965 0.0001 16 6 12.9934 4.4197 -0.0014 17 1 12.4429 5.3435 -0.1010 18 6 14.3877 4.4458 0.1272 19 7 15.0649 3.3283 0.1268 20 14 15.2794 6.0782 0.2993 21 1 15.4955 6.3749 1.7382 22 1 16.5910 6.0011 -0.3927 23 1 14.4605 7.1564 -0.3108 24 6 8.0544 2.1988 1.1958 25 6 6.6922 2.4339 1.1958 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6885 1.8463 -0.8900 31 1 3.8567 0.6439 -0.8908 32 1 3.8573 0.6437 0.8892 33 1 6.1597 2.5232 -2.1337 34 1 8.5879 2.1141 -2.1337 35 1 10.4953 1.2709 0.8887 36 1 10.4954 1.2707 -0.8912 37 1 10.4360 3.9506 -0.0017 38 1 16.0307 3.3463 0.2155 39 1 8.5862 2.1044 2.1311 40 1 6.1596 2.5231 2.1311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430103078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:42 Heat of formation + Delta-G solvation = -127.789065 kcal Electronic energy + Delta-G solvation = -24303.563604 eV Core-core repulsion = 20403.965635 eV Total energy + Delta-G solvation = -3899.597969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.54237 -38.49947 -37.41690 -37.24425 -36.25731 -33.96032 -32.49267 -32.45271 -31.16364 -30.97406 -27.16001 -27.01664 -25.24521 -23.90745 -22.97219 -21.74380 -19.76873 -19.29222 -18.27681 -17.50659 -17.14318 -16.97599 -16.18942 -16.11944 -15.59073 -15.38324 -15.19959 -15.18147 -14.65049 -14.20215 -14.11134 -13.85334 -13.70611 -13.21461 -13.02928 -12.74863 -12.40834 -12.40358 -12.31792 -12.26052 -11.97554 -11.78483 -11.63201 -11.33643 -11.22454 -11.19590 -10.91955 -10.76115 -10.50042 -10.30835 -10.26002 -9.38143 -9.14027 -8.89711 -7.69109 -7.64495 -6.25207 -4.69693 -0.35630 0.66347 1.21391 2.51517 3.04125 3.11585 3.19051 3.22647 3.36501 3.71107 3.77517 4.06714 4.08366 4.23684 4.51811 4.58858 4.64684 4.73663 4.78144 4.80748 4.81091 4.95146 5.03642 5.15607 5.17411 5.26304 5.26824 5.58794 5.62389 5.79276 5.93641 6.05914 6.07034 6.24404 6.48077 6.58810 6.74053 7.39103 7.82528 7.96473 8.26323 8.97199 9.42457 10.52300 10.70145 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.033106 B = 0.002077 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.575851 B =13480.865733 C =13840.148898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.072 3.928 4 C -0.617 4.617 5 S 2.509 3.491 6 O -0.933 6.933 7 O -0.933 6.933 8 C -0.665 4.665 9 C -0.025 4.025 10 C -0.125 4.125 11 C -0.027 4.027 12 C 0.160 3.840 13 N -0.763 5.763 14 C 0.555 3.445 15 O -0.580 6.580 16 C -0.545 4.545 17 H 0.069 0.931 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.909 3.091 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.125 4.125 25 C -0.025 4.025 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.382 0.618 38 H 0.269 0.731 39 H 0.136 0.864 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.920 -4.632 -0.026 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.006 4.006 4 C -0.744 4.744 5 S 2.688 3.312 6 O -0.930 6.930 7 O -0.930 6.930 8 C -0.753 4.753 9 C -0.044 4.044 10 C -0.144 4.144 11 C -0.028 4.028 12 C 0.036 3.964 13 N -0.419 5.419 14 C 0.359 3.641 15 O -0.463 6.463 16 C -0.581 4.581 17 H 0.087 0.913 18 C -0.132 4.132 19 N -0.395 5.395 20 Si 0.734 3.266 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.144 4.144 25 C -0.044 4.044 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.214 0.786 38 H 0.080 0.920 39 H 0.154 0.846 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.559 -4.910 -0.021 27.009 hybrid contribution 0.606 0.582 0.102 0.846 sum -25.953 -4.328 0.081 26.312 Atomic orbital electron populations 1.22860 0.80269 1.03389 1.00556 1.87935 1.20269 1.26319 1.95508 1.22089 0.89682 0.86856 1.02010 1.30535 1.05113 1.25279 1.13482 1.04990 0.74956 0.76440 0.74800 1.93584 1.84585 1.70302 1.44526 1.93583 1.84569 1.70325 1.44518 1.30214 1.24297 1.20990 0.99834 1.20914 0.94914 0.92235 0.96366 1.21306 0.94023 1.00547 0.98572 1.20658 0.96776 0.92146 0.93222 1.19965 0.84528 0.89766 1.02181 1.46224 1.07549 1.05075 1.83064 1.18279 0.78611 0.90852 0.76346 1.90606 1.65833 1.34832 1.54987 1.20872 0.91683 0.91799 1.53791 0.91278 1.25712 0.97631 0.97257 0.92643 1.70023 1.07472 1.27143 1.34912 0.86335 0.78966 0.82465 0.78866 1.19756 1.20403 1.18840 1.21308 0.94029 1.00531 0.98573 1.20914 0.94920 0.92215 0.96369 0.89066 0.93529 0.93523 0.91418 0.91430 0.83706 0.83699 0.84146 0.84612 0.91876 0.91882 0.78592 0.92028 0.84608 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -3.10 10.70 -35.23 -0.38 -3.47 16 3 C 0.07 0.49 5.95 37.15 0.22 0.71 16 4 C -0.62 -3.91 6.35 37.15 0.24 -3.67 16 5 S 2.51 23.01 5.16 -107.50 -0.55 22.46 16 6 O -0.93 -10.99 17.13 -57.54 -0.99 -11.97 16 7 O -0.93 -10.98 17.13 -57.54 -0.99 -11.97 16 8 C -0.66 -7.15 5.66 -39.58 -0.22 -7.38 16 9 C -0.03 -0.28 9.47 -39.58 -0.37 -0.66 16 10 C -0.13 -1.59 9.70 -39.58 -0.38 -1.98 16 11 C -0.03 -0.39 5.25 -104.62 -0.55 -0.94 16 12 C 0.16 2.91 5.80 -5.19 -0.03 2.88 16 13 N -0.76 -16.63 5.54 -62.90 -0.35 -16.97 16 14 C 0.55 15.52 7.74 -12.99 -0.10 15.42 16 15 O -0.58 -18.47 15.05 5.20 0.08 -18.40 16 16 C -0.54 -15.24 9.53 -35.63 -0.34 -15.58 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.09 2.42 5.49 -17.37 -0.10 2.33 16 19 N -0.77 -22.77 11.85 55.55 0.66 -22.11 16 20 Si 0.91 20.02 29.56 -169.99 -5.03 14.99 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.13 -1.59 9.70 -39.58 -0.38 -1.98 16 25 C -0.03 -0.28 9.47 -39.58 -0.37 -0.66 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.14 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.14 1.27 7.57 -52.49 -0.40 0.87 16 34 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 37 H 0.38 7.52 8.44 -40.82 -0.34 7.18 16 38 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 39 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.14 1.27 7.57 -52.48 -0.40 0.87 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -38.81 363.58 -8.68 -47.49 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.33 Total: 4.73 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.29 Total: -10.25 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.31 Total: -39.09 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.27 Total: -45.81 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.55 Total: 22.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.81 -8.68 -47.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430103078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.297 kcal (2) G-P(sol) polarization free energy of solvation -38.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds