Wall clock time and date at job start Fri Apr 10 2020 18:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47017 * 254.37479 * 3 2 1 5 5 C 1.36933 * 120.00200 * 274.80445 * 4 3 2 6 6 H 1.08004 * 120.00050 * 146.42336 * 5 4 3 7 7 C 1.38809 * 120.00125 * 326.41898 * 5 4 3 8 8 N 1.31614 * 120.00442 * 156.59443 * 7 5 4 9 9 Si 1.86804 * 119.99952 * 336.59499 * 7 5 4 10 10 H 1.48501 * 109.47009 * 95.44500 * 9 7 5 11 11 H 1.48495 * 109.47479 * 215.44976 * 9 7 5 12 12 H 1.48504 * 109.47038 * 335.44872 * 9 7 5 13 13 S 1.65606 * 119.99870 * 94.79930 * 4 3 2 14 14 O 1.42095 * 106.40348 * 336.46475 * 13 4 3 15 15 O 1.42100 * 106.40323 * 203.53827 * 13 4 3 16 16 C 1.76204 * 107.21337 * 90.00064 * 13 4 3 17 17 C 1.39867 * 126.04049 * 269.97529 * 16 13 4 18 18 N 1.30842 * 108.20314 * 180.02562 * 17 16 13 19 19 N 1.40090 * 108.20427 * 0.02562 * 18 17 16 20 20 C 1.46494 * 126.03485 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.47257 * 304.99169 * 20 19 18 22 22 O 1.20831 * 119.99779 * 0.02562 * 21 20 19 23 23 O 1.34224 * 120.00417 * 180.02562 * 21 20 19 24 24 C 1.45198 * 117.00299 * 180.02562 * 23 21 20 25 25 C 1.34953 * 107.92507 * 359.97438 * 19 18 17 26 26 H 4.40642 * 5.51427 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46855 * 134.38348 * 3 2 1 28 28 H 1.08996 * 109.47724 * 14.37675 * 3 2 1 29 29 H 0.97004 * 120.00063 * 179.97438 * 8 7 5 30 30 H 1.07997 * 125.89928 * 359.97438 * 17 16 13 31 31 H 1.08997 * 109.47447 * 64.99636 * 20 19 18 32 32 H 1.09004 * 109.46712 * 184.99620 * 20 19 18 33 33 H 1.08995 * 109.47102 * 60.00433 * 24 23 21 34 34 H 1.09002 * 109.47132 * 180.02562 * 24 23 21 35 35 H 1.09006 * 109.46940 * 299.99980 * 24 23 21 36 36 H 1.07990 * 126.12477 * 180.26542 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3729 1.3302 5 6 3.2682 1.6938 1.6655 6 1 3.0908 2.0136 2.6817 7 6 3.6320 2.6217 0.6993 8 7 3.3278 3.8921 0.8594 9 14 4.5534 2.0672 -0.8281 10 1 3.5878 1.8379 -1.9328 11 1 5.5242 3.1169 -1.2290 12 1 5.2808 0.8056 -0.5367 13 16 3.5238 -0.8038 2.4284 14 8 2.7958 -1.9636 2.0491 15 8 3.4178 -0.2050 3.7127 16 6 5.2278 -1.1885 2.1979 17 6 5.7421 -2.1643 1.3379 18 7 7.0463 -2.1545 1.4420 19 7 7.4037 -1.1711 2.3735 20 6 8.7672 -0.8299 2.7863 21 6 9.4676 -2.0696 3.2799 22 8 8.8874 -3.1294 3.2858 23 8 10.7360 -1.9964 3.7131 24 6 11.3475 -3.2301 4.1736 25 6 6.2700 -0.5928 2.8224 26 1 -1.0501 0.0002 -0.0002 27 1 3.0090 0.7197 -0.7345 28 1 3.0099 -0.9946 -0.2551 29 1 3.5825 4.5406 0.1843 30 1 5.1627 -2.8142 0.6989 31 1 9.3120 -0.4188 1.9364 32 1 8.7303 -0.0905 3.5863 33 1 11.3572 -3.9563 3.3608 34 1 12.3698 -3.0309 4.4954 35 1 10.7747 -3.6292 5.0107 36 1 6.2063 0.2055 3.5470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490865806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:54 Heat of formation + Delta-G solvation = 10.407723 kcal Electronic energy + Delta-G solvation = -25725.927824 eV Core-core repulsion = 21728.782174 eV Total energy + Delta-G solvation = -3997.145650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23659 -40.36806 -36.80309 -36.44495 -35.97987 -34.59742 -33.58115 -32.64971 -31.47253 -30.10240 -28.98361 -26.98510 -26.76639 -24.08163 -22.27594 -21.51249 -20.56903 -18.55190 -18.40539 -18.04284 -17.79570 -17.03645 -16.73050 -16.51649 -16.38786 -15.72373 -15.18405 -14.88094 -14.36686 -14.11651 -13.84295 -13.65113 -13.49949 -13.22564 -12.95780 -12.74925 -12.63188 -12.49491 -12.41860 -11.27440 -11.19366 -11.13891 -11.08557 -10.92758 -10.83580 -10.81635 -10.66910 -10.32376 -10.03652 -9.72660 -9.52401 -9.34903 -9.07281 -8.82806 -8.35001 -6.68525 -4.15508 1.50424 1.68063 1.85164 2.20849 2.64964 2.77702 2.93020 3.09554 3.13239 3.44768 3.57106 3.95523 4.26406 4.36840 4.40629 4.69761 4.73334 4.77466 4.84576 4.86641 4.90132 5.12075 5.15796 5.18101 5.42986 5.74830 5.79883 5.95346 5.97642 6.12877 6.53761 6.69795 6.82803 6.92647 7.40747 7.41491 7.70104 8.18783 8.32407 8.84433 8.87468 10.38861 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.004180 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.916199 B = 6697.033478 C = 7412.578627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C 0.223 3.777 4 N -0.833 5.833 5 C -0.271 4.271 6 H 0.125 0.875 7 C 0.069 3.931 8 N -0.830 5.830 9 Si 0.866 3.134 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.254 1.254 13 S 2.605 3.395 14 O -0.993 6.993 15 O -0.972 6.972 16 C -0.789 4.789 17 C 0.124 3.876 18 N -0.284 5.284 19 N -0.375 5.375 20 C 0.143 3.857 21 C 0.445 3.555 22 O -0.473 6.473 23 O -0.360 6.360 24 C 0.038 3.962 25 C 0.174 3.826 26 H 0.213 0.787 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.280 0.720 30 H 0.192 0.808 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.286 -5.814 0.833 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.167 4.167 3 C 0.098 3.902 4 N -0.658 5.658 5 C -0.415 4.415 6 H 0.143 0.857 7 C -0.145 4.145 8 N -0.466 5.466 9 Si 0.693 3.307 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.178 1.178 13 S 2.703 3.297 14 O -0.982 6.982 15 O -0.962 6.962 16 C -0.880 4.880 17 C -0.066 4.066 18 N -0.102 5.102 19 N -0.157 5.157 20 C 0.019 3.981 21 C 0.284 3.716 22 O -0.357 6.357 23 O -0.277 6.277 24 C -0.056 4.056 25 C 0.026 3.974 26 H 0.230 0.770 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.209 0.791 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.996 -7.130 1.149 14.868 hybrid contribution 0.467 0.143 -0.794 0.932 sum 13.463 -6.986 0.355 15.172 Atomic orbital electron populations 1.24664 0.95633 1.02695 1.00447 1.23430 0.94637 0.98694 0.99936 1.18256 0.84555 1.00461 0.86974 1.53721 1.68301 1.17621 1.26136 1.19243 1.43134 0.78950 1.00130 0.85748 1.25629 0.95264 0.94868 0.98725 1.69842 1.39224 1.02075 1.35496 0.87112 0.80693 0.79882 0.83030 1.19370 1.21142 1.17759 1.07805 0.73467 0.72875 0.75528 1.93390 1.70742 1.50316 1.83775 1.93397 1.86380 1.76894 1.39578 1.32856 1.28109 1.12399 1.14681 1.23485 0.91142 0.95633 0.96363 1.77365 1.15154 1.08225 1.09420 1.48569 1.04574 1.29306 1.33204 1.21002 0.80272 0.93233 1.03560 1.23667 0.80841 0.91465 0.75632 1.90782 1.65730 1.30445 1.48766 1.86461 1.27838 1.38651 1.74709 1.23290 0.97931 0.84398 0.99958 1.22486 0.83788 0.95604 0.95537 0.77006 0.90205 0.88847 0.90960 0.79140 0.85250 0.84011 0.91743 0.87815 0.91774 0.79097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.00 19.25 29.55 0.57 -3.43 16 2 C -0.16 -3.47 13.64 -37.12 -0.51 -3.97 16 3 C 0.22 4.67 4.78 -6.83 -0.03 4.63 16 4 N -0.83 -18.96 2.51 -62.77 -0.16 -19.12 16 5 C -0.27 -6.71 9.59 -15.06 -0.14 -6.86 16 6 H 0.13 3.34 7.53 -52.48 -0.40 2.95 16 7 C 0.07 1.69 5.32 -17.43 -0.09 1.60 16 8 N -0.83 -21.32 13.97 55.49 0.78 -20.55 16 9 Si 0.87 18.35 24.94 -169.99 -4.24 14.11 16 10 H -0.27 -5.46 6.68 56.52 0.38 -5.08 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 13 S 2.61 57.90 5.75 -107.50 -0.62 57.29 16 14 O -0.99 -23.19 16.84 -57.17 -0.96 -24.15 16 15 O -0.97 -23.80 16.73 -57.17 -0.96 -24.75 16 16 C -0.79 -15.44 6.17 -40.01 -0.25 -15.68 16 17 C 0.12 2.30 11.81 -17.36 -0.21 2.10 16 18 N -0.28 -5.22 11.64 30.62 0.36 -4.86 16 19 N -0.38 -5.97 3.40 -62.55 -0.21 -6.19 16 20 C 0.14 1.51 7.10 -5.20 -0.04 1.48 16 21 C 0.44 5.49 7.99 36.01 0.29 5.78 16 22 O -0.47 -7.83 15.46 -18.75 -0.29 -8.12 16 23 O -0.36 -3.57 10.56 -39.24 -0.41 -3.99 16 24 C 0.04 0.29 10.56 101.05 1.07 1.35 16 25 C 0.17 2.97 11.19 -17.22 -0.19 2.78 16 26 H 0.21 2.94 7.80 -54.09 -0.42 2.52 16 27 H 0.08 1.66 2.63 -51.93 -0.14 1.53 16 28 H 0.09 1.69 7.62 -51.93 -0.40 1.29 16 29 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.19 3.04 8.06 -52.49 -0.42 2.62 16 31 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.14 0.93 8.07 -51.93 -0.42 0.52 16 33 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.19 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -35.51 340.73 -4.58 -40.09 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.46 Total: 5.33 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 0.47 Total: -10.23 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.76 Total: -50.72 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -2.62 Total: -61.01 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.24 Total: 14.11 kcal Atomic # 16 Polarization: 57.90 SS G_CDS: -0.62 Total: 57.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.51 -4.58 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490865806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.499 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds