Wall clock time and date at job start Fri Apr 10 2020 18:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46659 * 192.84855 * 3 2 1 5 5 C 1.36737 * 120.00299 * 281.00982 * 4 3 2 6 6 H 1.08005 * 119.99474 * 315.91349 * 5 4 3 7 7 C 1.39141 * 120.00364 * 135.91634 * 5 4 3 8 8 N 1.31304 * 119.99796 * 338.42817 * 7 5 4 9 9 Si 1.86793 * 119.99955 * 158.42626 * 7 5 4 10 10 H 1.48493 * 109.47384 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47160 * 120.00301 * 9 7 5 12 12 H 1.48498 * 109.47248 * 239.99728 * 9 7 5 13 13 C 1.34783 * 119.99723 * 101.00887 * 4 3 2 14 14 O 1.21585 * 119.99658 * 186.81818 * 13 4 3 15 15 C 1.47872 * 120.00140 * 6.81187 * 13 4 3 16 16 C 1.39831 * 120.09646 * 322.36535 * 15 13 4 17 17 C 1.37232 * 119.89555 * 180.11013 * 16 15 13 18 18 C 1.40571 * 120.75215 * 0.02562 * 17 16 15 19 19 C 1.39451 * 119.53791 * 359.76960 * 18 17 16 20 20 C 1.39009 * 120.09280 * 142.35994 * 15 13 4 21 21 N 1.38442 * 123.42519 * 180.36846 * 19 18 17 22 22 C 1.32948 * 125.66276 * 318.97391 * 21 19 18 23 23 O 1.21278 * 119.03863 * 182.53463 * 22 21 19 24 24 C 1.50413 * 121.93087 * 2.53735 * 22 21 19 25 25 N 1.46291 * 108.83933 * 63.62799 * 24 22 21 26 26 C 1.33165 * 121.51464 * 297.04065 * 25 24 22 27 27 O 1.21582 * 117.73133 * 179.22366 * 26 25 24 28 28 H 4.40643 * 5.51394 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47333 * 72.85350 * 3 2 1 30 30 H 1.08996 * 109.47112 * 312.84349 * 3 2 1 31 31 H 0.97001 * 119.99855 * 185.04717 * 8 7 5 32 32 H 1.08008 * 120.05056 * 0.08868 * 16 15 13 33 33 H 1.08002 * 119.61825 * 179.97438 * 17 16 15 34 34 H 1.08005 * 119.70924 * 359.97438 * 20 15 13 35 35 H 0.97006 * 117.16451 * 138.68923 * 21 19 18 36 36 H 1.09000 * 109.57454 * 303.82170 * 24 22 21 37 37 H 1.08997 * 109.68403 * 183.50182 * 24 22 21 38 38 H 0.97000 * 119.23997 * 117.06069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3476 0.3072 5 6 3.1478 2.3081 -0.6660 6 1 3.5016 2.0669 -1.6575 7 6 2.7066 3.5960 -0.3788 8 7 1.9041 3.8033 0.6395 9 14 3.2560 5.0302 -1.4420 10 1 4.1515 4.5344 -2.5178 11 1 2.0669 5.6806 -2.0490 12 1 3.9859 6.0160 -0.6049 13 6 3.5682 1.6400 1.5490 14 8 3.8557 2.7853 1.8385 15 6 3.6952 0.5679 2.5595 16 6 2.7499 -0.4612 2.6126 17 6 2.8705 -1.4528 3.5535 18 6 3.9365 -1.4484 4.4699 19 6 4.8838 -0.4264 4.4177 20 6 4.7548 0.5800 3.4592 21 7 5.9682 -0.3471 5.2746 22 6 5.9461 -0.6054 6.5786 23 8 6.9600 -0.4525 7.2262 24 6 4.7005 -1.0816 7.2743 25 7 4.3265 -2.3878 6.7319 26 6 3.9885 -2.5395 5.4528 27 8 3.7037 -3.6583 5.0717 28 1 -1.0503 -0.0004 -0.0003 29 1 3.0095 -0.3021 -0.9819 30 1 3.0096 -0.6980 0.7535 31 1 1.5380 4.6878 0.7964 32 1 1.9260 -0.4752 1.9145 33 1 2.1376 -2.2452 3.5908 34 1 5.4843 1.3753 3.4164 35 1 6.8188 -0.0841 4.8895 36 1 3.8923 -0.3704 7.1037 37 1 4.8887 -1.1708 8.3442 38 1 4.3244 -3.1611 7.3175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491070961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:03 Heat of formation + Delta-G solvation = 1.692553 kcal Electronic energy + Delta-G solvation = -27343.713856 eV Core-core repulsion = 23346.579430 eV Total energy + Delta-G solvation = -3997.134425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.55597 -40.98046 -40.40085 -39.07528 -36.88487 -36.60221 -35.89577 -34.42750 -33.08329 -32.29644 -31.11015 -28.89268 -28.17159 -27.32989 -25.54608 -24.09082 -22.59718 -21.92510 -21.21929 -19.56233 -19.35276 -18.94450 -18.36328 -18.19351 -17.85862 -17.30102 -16.90888 -16.77720 -16.21880 -16.10013 -15.84266 -15.59870 -15.32842 -15.00606 -14.74468 -14.53285 -14.26396 -14.07094 -13.91378 -13.54125 -13.38391 -13.06664 -12.82999 -12.75105 -12.34750 -12.13422 -11.98781 -11.72541 -11.39693 -11.28028 -10.97761 -10.85869 -10.42039 -10.29715 -10.06781 -9.50299 -9.31760 -8.26230 -6.03039 -0.55283 -0.00099 1.10225 1.33916 1.40018 1.45542 1.53809 1.75911 1.84856 1.99665 2.06837 2.28280 2.36550 2.70830 2.97298 3.08804 3.24407 3.32441 3.66733 3.77102 3.86828 3.97229 4.05811 4.12521 4.29527 4.43463 4.48542 4.68320 4.71459 4.78269 5.00888 5.21232 5.26350 5.32430 5.45361 5.48108 5.60947 5.89438 5.99944 6.13302 6.68109 6.85618 6.91378 6.92916 7.04919 7.52685 8.16095 8.81771 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.003833 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.573219 B = 7303.919768 C = 8513.766558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.216 4.216 3 C 0.182 3.818 4 N -0.443 5.443 5 C -0.372 4.372 6 H 0.091 0.909 7 C 0.030 3.970 8 N -0.853 5.853 9 Si 0.969 3.031 10 H -0.254 1.254 11 H -0.275 1.275 12 H -0.293 1.293 13 C 0.491 3.509 14 O -0.571 6.571 15 C -0.062 4.062 16 C -0.127 4.127 17 C -0.036 4.036 18 C -0.146 4.146 19 C 0.190 3.810 20 C -0.107 4.107 21 N -0.652 5.652 22 C 0.507 3.493 23 O -0.554 6.554 24 C 0.094 3.906 25 N -0.692 5.692 26 C 0.568 3.432 27 O -0.564 6.564 28 H 0.243 0.757 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.262 0.738 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.416 0.584 36 H 0.118 0.882 37 H 0.165 0.835 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -12.057 9.905 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.217 4.217 3 C 0.060 3.940 4 N -0.162 5.162 5 C -0.499 4.499 6 H 0.108 0.892 7 C -0.179 4.179 8 N -0.487 5.487 9 Si 0.794 3.206 10 H -0.178 1.178 11 H -0.200 1.200 12 H -0.220 1.220 13 C 0.280 3.720 14 O -0.453 6.453 15 C -0.067 4.067 16 C -0.145 4.145 17 C -0.055 4.055 18 C -0.152 4.152 19 C 0.094 3.906 20 C -0.128 4.128 21 N -0.297 5.297 22 C 0.294 3.706 23 O -0.430 6.430 24 C -0.033 4.033 25 N -0.347 5.347 26 C 0.355 3.645 27 O -0.444 6.444 28 H 0.260 0.740 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.136 0.864 37 H 0.182 0.818 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.316 -11.730 10.363 15.707 hybrid contribution 0.246 1.160 -0.703 1.379 sum 1.562 -10.570 9.659 14.404 Atomic orbital electron populations 1.25567 0.96670 0.99176 1.00167 1.23874 0.95619 1.01225 1.00985 1.19354 0.84072 0.86802 1.03754 1.43317 1.53792 1.09785 1.09329 1.19390 1.46019 0.90476 0.93972 0.89189 1.26090 0.93377 1.01563 0.96821 1.69927 1.26418 1.22961 1.29365 0.85275 0.78524 0.78555 0.78277 1.17766 1.20037 1.22011 1.18562 0.81747 0.88000 0.83669 1.90619 1.53244 1.22523 1.78865 1.20193 0.95868 0.95009 0.95591 1.21770 0.99613 0.93569 0.99590 1.21260 0.96047 0.97493 0.90735 1.19444 0.99883 0.95045 1.00851 1.16975 0.89441 0.92318 0.91857 1.21104 0.99001 0.97334 0.95365 1.42951 1.12084 1.66594 1.08063 1.21327 0.92010 0.75977 0.81244 1.90818 1.36024 1.52522 1.63633 1.21979 0.93733 0.85996 1.01587 1.45270 1.67462 1.12132 1.09821 1.17672 0.76170 0.87936 0.82674 1.90855 1.50039 1.25145 1.78382 0.74025 0.88599 0.85949 0.92906 0.83415 0.82342 0.84560 0.74500 0.86410 0.81755 0.73350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.54 19.25 74.32 1.43 -5.11 16 2 C -0.22 -8.07 11.56 31.13 0.36 -7.71 16 3 C 0.18 6.76 5.40 84.57 0.46 7.22 16 4 N -0.44 -21.21 2.49 -648.69 -1.62 -22.83 16 5 C -0.37 -19.70 9.12 84.15 0.77 -18.93 16 6 H 0.09 4.54 7.92 -2.91 -0.02 4.52 16 7 C 0.03 1.66 4.28 84.99 0.36 2.03 16 8 N -0.85 -50.12 11.75 21.70 0.25 -49.87 16 9 Si 0.97 43.93 29.61 68.60 2.03 45.96 16 10 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 C 0.49 23.97 6.82 86.79 0.59 24.56 16 14 O -0.57 -33.10 14.37 -3.98 -0.06 -33.16 16 15 C -0.06 -2.29 5.39 -20.16 -0.11 -2.40 16 16 C -0.13 -3.90 7.34 22.42 0.16 -3.74 16 17 C -0.04 -0.92 9.40 22.60 0.21 -0.71 16 18 C -0.15 -3.57 5.49 -20.14 -0.11 -3.68 16 19 C 0.19 4.71 6.16 38.71 0.24 4.94 16 20 C -0.11 -3.32 9.37 22.78 0.21 -3.10 16 21 N -0.65 -13.95 4.89 -306.23 -1.50 -15.45 16 22 C 0.51 10.34 7.41 87.85 0.65 10.99 16 23 O -0.55 -14.58 17.80 -3.02 -0.05 -14.63 16 24 C 0.09 1.19 6.48 85.58 0.55 1.74 16 25 N -0.69 -10.46 5.29 -473.77 -2.51 -12.96 16 26 C 0.57 12.91 7.22 86.77 0.63 13.53 16 27 O -0.56 -16.27 17.28 -3.97 -0.07 -16.34 16 28 H 0.24 5.83 7.80 -4.40 -0.03 5.79 16 29 H 0.10 3.24 8.12 -2.39 -0.02 3.22 16 30 H 0.12 3.87 4.27 -2.39 -0.01 3.86 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.15 4.76 4.02 -2.91 -0.01 4.74 16 33 H 0.16 3.44 7.86 -2.91 -0.02 3.42 16 34 H 0.14 4.34 8.02 -2.91 -0.02 4.32 16 35 H 0.42 8.25 8.68 -92.70 -0.80 7.44 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.16 1.00 8.11 -2.39 -0.02 0.98 16 38 H 0.43 4.65 8.85 -92.71 -0.82 3.83 16 Total: -1.00 -79.04 335.60 2.44 -76.60 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.46 Total: 23.03 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 6.41 Total: 19.64 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -5.37 Total: -101.11 kcal Atomic # 8 Polarization: -63.94 SS G_CDS: -0.18 Total: -64.12 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -79.04 2.44 -76.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491070961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.298 kcal (2) G-P(sol) polarization free energy of solvation -79.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds