Wall clock time and date at job start Fri Apr 10 2020 18:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47094 * 2 1 4 4 N 1.46500 * 109.47402 * 120.00340 * 2 1 3 5 5 C 1.46501 * 120.00340 * 122.30045 * 4 2 1 6 6 C 1.50707 * 109.46895 * 270.00156 * 5 4 2 7 7 H 1.07991 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99523 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00593 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99790 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47095 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47483 * 119.99983 * 10 8 6 13 13 H 1.48510 * 109.47046 * 239.99908 * 10 8 6 14 14 C 1.34784 * 119.99634 * 302.30469 * 4 2 1 15 15 O 1.21553 * 119.99019 * 211.73796 * 14 4 2 16 16 C 1.47833 * 120.00055 * 31.73249 * 14 4 2 17 17 C 1.40027 * 120.55711 * 137.12774 * 16 14 4 18 18 C 1.38350 * 118.29186 * 179.70276 * 17 16 14 19 19 C 1.38358 * 119.30053 * 0.27427 * 18 17 16 20 20 S 1.76204 * 119.46122 * 179.97438 * 19 18 17 21 21 N 1.65602 * 107.21387 * 89.99928 * 20 19 18 22 22 O 1.42089 * 106.40361 * 203.54005 * 20 19 18 23 23 O 1.42098 * 106.40140 * 336.46286 * 20 19 18 24 24 N 1.31925 * 121.07896 * 0.02562 * 19 18 17 25 25 C 1.31691 * 121.88292 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.46933 * 253.14960 * 1 2 3 27 27 H 1.08999 * 109.47165 * 13.14830 * 1 2 3 28 28 H 1.08997 * 109.47026 * 133.15288 * 1 2 3 29 29 H 1.09001 * 109.46800 * 240.00423 * 2 1 3 30 30 H 1.08998 * 109.47105 * 222.81094 * 3 2 1 31 31 H 1.09000 * 109.47070 * 342.81359 * 3 2 1 32 32 H 1.08996 * 109.47086 * 102.81212 * 3 2 1 33 33 H 1.09001 * 109.46924 * 29.99898 * 5 4 2 34 34 H 1.08990 * 109.47082 * 149.99978 * 5 4 2 35 35 H 0.96995 * 120.00643 * 180.02562 * 9 8 6 36 36 H 1.08001 * 120.85339 * 359.97438 * 17 16 14 37 37 H 1.08002 * 120.35349 * 180.24912 * 18 17 16 38 38 H 0.97002 * 119.99564 * 150.00157 * 21 20 19 39 39 H 0.96997 * 120.00081 * 329.99743 * 21 20 19 40 40 H 1.07999 * 119.71956 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9018 -1.8517 1.0623 6 6 2.0724 -3.1075 0.9834 7 1 0.9951 -3.0468 1.0281 8 6 2.6890 -4.3338 0.8532 9 7 4.0009 -4.4076 0.7973 10 14 1.6610 -5.8903 0.7547 11 1 0.2207 -5.5385 0.8393 12 1 1.9279 -6.5792 -0.5335 13 1 2.0171 -6.7908 1.8807 14 6 1.6549 -0.2579 2.4197 15 8 2.4164 -0.3819 3.3590 16 6 0.3303 0.3674 2.6193 17 6 -0.4483 0.0443 3.7373 18 6 -1.6779 0.6620 3.8809 19 6 -2.0974 1.5664 2.9214 20 16 -3.6629 2.3551 3.0996 21 7 -3.4143 3.7495 3.9577 22 8 -4.0628 2.7525 1.7954 23 8 -4.4468 1.5082 3.9287 24 7 -1.3449 1.8470 1.8748 25 6 -0.1675 1.2853 1.6939 26 1 -0.3633 -0.2979 0.9835 27 1 -0.3633 1.0007 -0.2338 28 1 -0.3633 -0.7029 -0.7497 29 1 1.8933 -0.5138 -0.8900 30 1 2.8719 1.5337 -0.6984 31 1 1.2355 2.1123 -0.3037 32 1 2.3760 1.7090 1.0020 33 1 3.4976 -1.7522 0.1549 34 1 3.5630 -1.9067 1.9269 35 1 4.4347 -5.2703 0.7053 36 1 -0.0961 -0.6657 4.4711 37 1 -2.3039 0.4405 4.7326 38 1 -3.9875 4.5181 3.8106 39 1 -2.6955 3.7977 4.6072 40 1 0.4194 1.5404 0.8240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537313643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:23 Heat of formation + Delta-G solvation = 10.960837 kcal Electronic energy + Delta-G solvation = -26515.073441 eV Core-core repulsion = 22653.784870 eV Total energy + Delta-G solvation = -3861.288571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62136 -38.84700 -37.37064 -36.76326 -36.04991 -33.70907 -33.50048 -32.77541 -32.11915 -30.94234 -27.52552 -27.18608 -25.17370 -24.10341 -22.74402 -22.02362 -20.02517 -19.09001 -18.79246 -17.68076 -17.35408 -16.72432 -16.65553 -16.40115 -15.81061 -15.43468 -15.22028 -14.99981 -14.72879 -14.28359 -13.79815 -13.73665 -13.39160 -12.83316 -12.55851 -12.41667 -12.41171 -12.30387 -12.27027 -12.16896 -11.97985 -11.46246 -11.39010 -11.27286 -10.98039 -10.88328 -10.76715 -10.58183 -10.27594 -10.09861 -10.00339 -9.78037 -9.32901 -8.90818 -8.58707 -7.84939 -6.19474 -4.26799 -0.00652 0.26508 1.04656 2.64881 2.88415 3.20037 3.23246 3.28634 3.32384 3.49463 3.64614 3.90645 4.30375 4.48691 4.54282 4.69042 4.83185 4.89856 4.92430 5.04154 5.14923 5.23321 5.38193 5.45548 5.55399 5.65616 5.69682 5.75053 5.87019 6.03930 6.13605 6.22829 6.32034 6.70271 6.87576 7.22038 7.35567 7.36604 7.76497 8.03987 8.10350 8.47977 8.80261 9.39940 10.87882 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.003625 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.860975 B = 7722.737269 C = 8251.255470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.131 3.869 3 C -0.187 4.187 4 N -0.600 5.600 5 C 0.247 3.753 6 C -0.539 4.539 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.567 3.433 15 O -0.519 6.519 16 C -0.132 4.132 17 C -0.044 4.044 18 C -0.101 4.101 19 C -0.441 4.441 20 S 2.716 3.284 21 N -1.245 6.245 22 O -0.942 6.942 23 O -0.955 6.955 24 N -0.416 5.416 25 C 0.104 3.896 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.422 0.578 39 H 0.417 0.583 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.822 16.436 3.160 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.026 3.974 3 C -0.244 4.244 4 N -0.333 5.333 5 C 0.129 3.871 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.528 5.528 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.353 3.647 15 O -0.395 6.395 16 C -0.138 4.138 17 C -0.071 4.071 18 C -0.124 4.124 19 C -0.659 4.659 20 S 2.800 3.200 21 N -0.920 5.920 22 O -0.931 6.931 23 O -0.943 6.943 24 N -0.127 5.127 25 C -0.057 4.057 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.253 0.747 39 H 0.244 0.756 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.393 16.318 2.609 20.072 hybrid contribution 0.630 -1.612 0.795 1.905 sum -10.763 14.706 3.404 18.539 Atomic orbital electron populations 1.23785 0.96336 1.02716 1.03691 1.21129 0.93213 0.92612 0.90397 1.22767 1.02212 0.95914 1.03506 1.48115 1.50228 1.31961 1.02955 1.19435 0.88834 0.79963 0.98852 1.21514 0.93536 0.91069 1.51638 0.92266 1.24934 0.94996 0.99128 0.94795 1.69934 1.08039 1.25532 1.49289 0.86446 0.80355 0.82859 0.77811 1.19758 1.20743 1.20765 1.17788 0.84844 0.78095 0.83971 1.90750 1.52010 1.54454 1.42236 1.21863 0.97602 0.98252 0.96068 1.21758 0.92609 0.97026 0.95664 1.21893 0.96544 0.94946 0.98975 1.33255 1.22178 1.11204 0.99261 1.01532 0.72214 0.72796 0.73488 1.53053 1.47547 1.33154 1.58238 1.93603 1.79979 1.81465 1.38085 1.93648 1.64444 1.67084 1.69163 1.67884 1.04429 1.22834 1.17554 1.25229 0.93153 0.90104 0.97179 0.90040 0.89917 0.91203 0.87591 0.90634 0.90725 0.91623 0.94476 0.93473 0.92534 0.82881 0.82478 0.74737 0.75619 0.76935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.96 7.72 37.16 0.29 -2.68 16 2 C 0.13 2.00 3.27 -67.93 -0.22 1.78 16 3 C -0.19 -2.20 8.35 37.16 0.31 -1.89 16 4 N -0.60 -11.90 2.38 -168.58 -0.40 -12.31 16 5 C 0.25 6.07 5.32 -5.19 -0.03 6.04 16 6 C -0.54 -14.36 9.39 -34.44 -0.32 -14.69 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 10 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.57 11.27 5.91 -12.33 -0.07 11.20 16 15 O -0.52 -11.99 16.80 5.32 0.09 -11.90 16 16 C -0.13 -2.14 4.23 -104.82 -0.44 -2.58 16 17 C -0.04 -0.64 9.83 -38.87 -0.38 -1.02 16 18 C -0.10 -1.22 9.54 -39.50 -0.38 -1.60 16 19 C -0.44 -5.49 6.86 -17.47 -0.12 -5.61 16 20 S 2.72 28.42 6.34 -107.50 -0.68 27.74 16 21 N -1.25 -7.36 9.52 60.35 0.57 -6.79 16 22 O -0.94 -13.00 17.85 -57.18 -1.02 -14.02 16 23 O -0.95 -12.09 17.24 -57.18 -0.99 -13.07 16 24 N -0.42 -5.75 10.06 -16.12 -0.16 -5.92 16 25 C 0.10 1.48 5.89 -17.13 -0.10 1.38 16 26 H 0.08 1.32 3.97 -60.85 -0.24 1.08 16 27 H 0.08 0.99 5.36 -51.93 -0.28 0.71 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.61 7.81 -51.93 -0.41 1.21 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.69 6.22 -51.93 -0.32 0.37 16 32 H 0.06 0.85 6.83 -51.93 -0.35 0.50 16 33 H 0.04 0.92 7.94 -51.93 -0.41 0.51 16 34 H 0.05 1.31 7.35 -51.93 -0.38 0.92 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 36 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.16 1.44 7.60 -52.49 -0.40 1.04 16 38 H 0.42 1.68 8.96 -34.47 -0.31 1.38 16 39 H 0.42 1.59 8.96 -34.47 -0.31 1.29 16 40 H 0.22 2.68 1.14 -53.07 -0.06 2.62 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -36.15 338.71 -7.62 -43.77 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.29 Total: 3.98 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.57 Total: -8.02 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.75 Total: -49.55 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.92 Total: -39.00 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 28.42 SS G_CDS: -0.68 Total: 27.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.15 -7.62 -43.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537313643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.732 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds