Wall clock time and date at job start Fri Apr 10 2020 18:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47094 * 2 1 4 4 N 1.46500 * 109.47402 * 120.00340 * 2 1 3 5 5 C 1.46501 * 120.00340 * 122.30045 * 4 2 1 6 6 C 1.50707 * 109.46895 * 270.00156 * 5 4 2 7 7 H 1.07991 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99523 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00593 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99790 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47095 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47483 * 119.99983 * 10 8 6 13 13 H 1.48510 * 109.47046 * 239.99908 * 10 8 6 14 14 C 1.34784 * 119.99634 * 302.30469 * 4 2 1 15 15 O 1.21553 * 119.99019 * 211.73796 * 14 4 2 16 16 C 1.47833 * 120.00055 * 31.73249 * 14 4 2 17 17 C 1.40027 * 120.55711 * 137.12774 * 16 14 4 18 18 C 1.38350 * 118.29186 * 179.70276 * 17 16 14 19 19 C 1.38358 * 119.30053 * 0.27427 * 18 17 16 20 20 S 1.76204 * 119.46122 * 179.97438 * 19 18 17 21 21 N 1.65602 * 107.21387 * 89.99928 * 20 19 18 22 22 O 1.42089 * 106.40361 * 203.54005 * 20 19 18 23 23 O 1.42098 * 106.40140 * 336.46286 * 20 19 18 24 24 N 1.31925 * 121.07896 * 0.02562 * 19 18 17 25 25 C 1.31691 * 121.88292 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.46933 * 253.14960 * 1 2 3 27 27 H 1.08999 * 109.47165 * 13.14830 * 1 2 3 28 28 H 1.08997 * 109.47026 * 133.15288 * 1 2 3 29 29 H 1.09001 * 109.46800 * 240.00423 * 2 1 3 30 30 H 1.08998 * 109.47105 * 222.81094 * 3 2 1 31 31 H 1.09000 * 109.47070 * 342.81359 * 3 2 1 32 32 H 1.08996 * 109.47086 * 102.81212 * 3 2 1 33 33 H 1.09001 * 109.46924 * 29.99898 * 5 4 2 34 34 H 1.08990 * 109.47082 * 149.99978 * 5 4 2 35 35 H 0.96995 * 120.00643 * 180.02562 * 9 8 6 36 36 H 1.08001 * 120.85339 * 359.97438 * 17 16 14 37 37 H 1.08002 * 120.35349 * 180.24912 * 18 17 16 38 38 H 0.97002 * 119.99564 * 150.00157 * 21 20 19 39 39 H 0.96997 * 120.00081 * 329.99743 * 21 20 19 40 40 H 1.07999 * 119.71956 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9018 -1.8517 1.0623 6 6 2.0724 -3.1075 0.9834 7 1 0.9951 -3.0468 1.0281 8 6 2.6890 -4.3338 0.8532 9 7 4.0009 -4.4076 0.7973 10 14 1.6610 -5.8903 0.7547 11 1 0.2207 -5.5385 0.8393 12 1 1.9279 -6.5792 -0.5335 13 1 2.0171 -6.7908 1.8807 14 6 1.6549 -0.2579 2.4197 15 8 2.4164 -0.3819 3.3590 16 6 0.3303 0.3674 2.6193 17 6 -0.4483 0.0443 3.7373 18 6 -1.6779 0.6620 3.8809 19 6 -2.0974 1.5664 2.9214 20 16 -3.6629 2.3551 3.0996 21 7 -3.4143 3.7495 3.9577 22 8 -4.0628 2.7525 1.7954 23 8 -4.4468 1.5082 3.9287 24 7 -1.3449 1.8470 1.8748 25 6 -0.1675 1.2853 1.6939 26 1 -0.3633 -0.2979 0.9835 27 1 -0.3633 1.0007 -0.2338 28 1 -0.3633 -0.7029 -0.7497 29 1 1.8933 -0.5138 -0.8900 30 1 2.8719 1.5337 -0.6984 31 1 1.2355 2.1123 -0.3037 32 1 2.3760 1.7090 1.0020 33 1 3.4976 -1.7522 0.1549 34 1 3.5630 -1.9067 1.9269 35 1 4.4347 -5.2703 0.7053 36 1 -0.0961 -0.6657 4.4711 37 1 -2.3039 0.4405 4.7326 38 1 -3.9875 4.5181 3.8106 39 1 -2.6955 3.7977 4.6072 40 1 0.4194 1.5404 0.8240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537313643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:23 Heat of formation + Delta-G solvation = -19.423953 kcal Electronic energy + Delta-G solvation = -26516.391025 eV Core-core repulsion = 22653.784870 eV Total energy + Delta-G solvation = -3862.606154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.84824 -40.22050 -38.33189 -38.17060 -37.00388 -35.52997 -34.10292 -33.95565 -33.72578 -32.18270 -29.36834 -28.26606 -26.58264 -25.23355 -24.50926 -23.32617 -20.95997 -20.39788 -19.67154 -18.74678 -18.48362 -18.36999 -17.97975 -17.44295 -17.06652 -16.75003 -16.53227 -16.18251 -16.04842 -15.90952 -15.08090 -14.87524 -14.57750 -14.31844 -14.00204 -13.78983 -13.57967 -13.39160 -13.29178 -13.25747 -13.23569 -13.13781 -12.83223 -12.63829 -12.53743 -12.31715 -12.18013 -11.78031 -11.71737 -11.39077 -11.34549 -11.22691 -10.69696 -10.67329 -10.02882 -9.51650 -8.27715 -6.43913 -1.02146 -0.69489 -0.03548 1.27668 1.34732 1.37453 1.48235 1.90378 2.09193 2.25289 2.34674 2.67638 2.87955 3.02165 3.25849 3.47550 3.60046 3.72719 3.79984 3.94575 3.98292 4.13857 4.27539 4.38118 4.45461 4.65056 4.71841 4.76593 4.89300 4.98393 5.03299 5.14644 5.15164 5.25724 5.25914 5.50614 5.77610 5.97777 6.27056 6.34197 6.51117 6.64815 6.95604 7.28334 8.79027 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.003625 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.860975 B = 7722.737269 C = 8251.255470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.123 3.877 3 C -0.181 4.181 4 N -0.605 5.605 5 C 0.263 3.737 6 C -0.549 4.549 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.271 1.271 13 H -0.280 1.280 14 C 0.565 3.435 15 O -0.566 6.566 16 C -0.155 4.155 17 C -0.050 4.050 18 C -0.094 4.094 19 C -0.439 4.439 20 S 2.746 3.254 21 N -1.225 6.225 22 O -0.972 6.972 23 O -0.973 6.973 24 N -0.421 5.421 25 C 0.112 3.888 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.004 0.996 35 H 0.269 0.731 36 H 0.153 0.847 37 H 0.190 0.810 38 H 0.435 0.565 39 H 0.430 0.570 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 17.750 2.907 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.020 3.980 3 C -0.238 4.238 4 N -0.337 5.337 5 C 0.143 3.857 6 C -0.588 4.588 7 H 0.074 0.926 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.196 1.196 13 H -0.206 1.206 14 C 0.353 3.647 15 O -0.446 6.446 16 C -0.161 4.161 17 C -0.077 4.077 18 C -0.115 4.115 19 C -0.655 4.655 20 S 2.827 3.173 21 N -0.906 5.906 22 O -0.962 6.962 23 O -0.961 6.961 24 N -0.132 5.132 25 C -0.048 4.048 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.078 0.922 36 H 0.170 0.830 37 H 0.207 0.793 38 H 0.269 0.731 39 H 0.260 0.740 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.863 17.666 2.328 22.576 hybrid contribution 1.357 -1.936 0.925 2.538 sum -12.507 15.730 3.253 20.358 Atomic orbital electron populations 1.23755 0.95215 1.04404 1.02771 1.21449 0.94178 0.94146 0.88253 1.22726 1.03908 0.93882 1.03308 1.48061 1.49776 1.31050 1.04816 1.18900 0.88857 0.81608 0.96372 1.21750 0.93473 0.92121 1.51417 0.92595 1.25788 0.96082 1.02366 0.94331 1.70044 1.09624 1.26497 1.50089 0.85413 0.78777 0.78802 0.78103 1.19272 1.19587 1.20586 1.18318 0.85819 0.77394 0.83129 1.90708 1.53627 1.56738 1.43492 1.21539 0.96126 1.00221 0.98200 1.21931 0.93455 0.97229 0.95097 1.22179 0.95655 0.93902 0.99789 1.33746 1.22400 1.10748 0.98614 1.00611 0.70987 0.72931 0.72774 1.52603 1.48218 1.32207 1.57593 1.93567 1.80310 1.82031 1.40247 1.93633 1.64719 1.68393 1.69389 1.67958 1.04200 1.22871 1.18164 1.25355 0.93347 0.89247 0.96892 0.91727 0.87051 0.91136 0.87938 0.89224 0.87221 0.92894 0.95301 0.97752 0.92238 0.82954 0.79320 0.73139 0.73984 0.75669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.55 7.72 71.98 0.56 -4.99 16 2 C 0.12 3.70 3.27 44.99 0.15 3.84 16 3 C -0.18 -4.00 8.35 71.98 0.60 -3.40 16 4 N -0.61 -24.86 2.38 -805.53 -1.92 -26.78 16 5 C 0.26 13.58 5.32 85.64 0.46 14.03 16 6 C -0.55 -30.11 9.39 25.60 0.24 -29.87 16 7 H 0.06 3.04 7.81 -2.92 -0.02 3.01 16 8 C 0.01 0.79 5.46 84.65 0.46 1.25 16 9 N -0.92 -53.79 13.29 21.45 0.28 -53.50 16 10 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 14 C 0.57 23.33 5.91 86.78 0.51 23.84 16 15 O -0.57 -27.75 16.80 -3.88 -0.07 -27.81 16 16 C -0.16 -5.02 4.23 -19.99 -0.08 -5.11 16 17 C -0.05 -1.43 9.83 22.73 0.22 -1.20 16 18 C -0.09 -2.06 9.54 22.32 0.21 -1.84 16 19 C -0.44 -9.82 6.86 84.71 0.58 -9.24 16 20 S 2.75 49.82 6.34 -56.49 -0.36 49.46 16 21 N -1.22 -10.38 9.52 37.02 0.35 -10.03 16 22 O -0.97 -24.45 17.85 -128.00 -2.28 -26.74 16 23 O -0.97 -21.90 17.24 -128.00 -2.21 -24.10 16 24 N -0.42 -10.64 10.06 -204.90 -2.06 -12.70 16 25 C 0.11 3.00 5.89 85.02 0.50 3.50 16 26 H 0.06 2.05 3.97 -10.77 -0.04 2.00 16 27 H 0.11 2.35 5.36 -2.39 -0.01 2.34 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 3.12 7.81 -2.39 -0.02 3.10 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.66 6.22 -2.39 -0.01 1.64 16 32 H 0.05 1.34 6.83 -2.39 -0.02 1.32 16 33 H 0.03 1.51 7.94 -2.39 -0.02 1.49 16 34 H 0.00 0.26 7.35 -2.39 -0.02 0.24 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.19 2.86 7.60 -2.91 -0.02 2.84 16 38 H 0.43 1.98 8.96 -96.75 -0.87 1.11 16 39 H 0.43 1.74 8.96 -96.75 -0.87 0.88 16 40 H 0.23 5.22 1.14 -3.46 0.00 5.22 16 Total: -1.00 -80.41 338.71 -2.46 -82.87 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -0.64 Total: 13.16 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 4.41 Total: -9.19 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.34 Total: -103.01 kcal Atomic # 8 Polarization: -74.10 SS G_CDS: -4.56 Total: -78.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 49.82 SS G_CDS: -0.36 Total: 49.46 kcal Total: -80.41 -2.46 -82.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537313643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.448 kcal (2) G-P(sol) polarization free energy of solvation -80.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds