Wall clock time and date at job start Fri Apr 10 2020 18:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34801 * 116.99989 * 2 1 4 4 O 1.21567 * 120.00543 * 0.02562 * 3 2 1 5 5 C 1.47013 * 119.99938 * 180.02562 * 3 2 1 6 6 C 1.36004 * 123.44594 * 0.02663 * 5 3 2 7 7 S 1.70419 * 110.94918 * 180.23190 * 6 5 3 8 8 C 1.75505 * 92.50464 * 359.64971 * 7 6 5 9 9 N 1.39786 * 124.74070 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99851 * 0.34363 * 9 8 7 11 11 O 1.21599 * 120.00008 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99654 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.46661 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00589 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99645 * 180.02562 * 14 13 12 17 17 C 1.37093 * 119.99749 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00327 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00041 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00303 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99780 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46754 * 90.00510 * 21 19 17 23 23 H 1.48497 * 109.47339 * 209.99928 * 21 19 17 24 24 H 1.48501 * 109.47347 * 330.00414 * 21 19 17 25 25 C 1.33448 * 110.51606 * 0.35310 * 8 7 6 26 26 H 1.09009 * 109.47151 * 299.99693 * 1 2 3 27 27 H 1.09000 * 109.47126 * 59.99231 * 1 2 3 28 28 H 1.08997 * 109.47722 * 180.02562 * 1 2 3 29 29 H 1.08002 * 124.52231 * 359.96007 * 6 5 3 30 30 H 0.96998 * 119.99906 * 180.33136 * 9 8 7 31 31 H 0.96998 * 120.00051 * 359.97438 * 12 10 9 32 32 H 1.09001 * 109.46921 * 299.99125 * 13 12 10 33 33 H 1.08989 * 109.47202 * 59.99327 * 13 12 10 34 34 H 0.97000 * 119.99900 * 359.97438 * 16 14 13 35 35 H 0.97006 * 120.00315 * 179.97438 * 20 19 17 36 36 H 1.08006 * 123.53695 * 179.74426 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2207 0.0005 5 6 3.5321 1.2780 -0.0006 6 6 4.3400 0.1840 -0.0016 7 16 5.9823 0.6393 0.0044 8 6 5.5878 2.3494 -0.0022 9 7 6.5280 3.3838 -0.0014 10 6 7.8450 3.0974 -0.0023 11 8 8.2153 1.9391 -0.0032 12 7 8.7515 4.0948 -0.0020 13 6 10.1831 3.7834 -0.0035 14 6 10.9758 5.0651 -0.0036 15 8 10.4016 6.1334 -0.0029 16 7 12.3230 5.0241 -0.0054 17 6 13.0442 6.1901 -0.0059 18 1 12.5328 7.1413 -0.0054 19 6 14.4330 6.1479 -0.0073 20 7 15.1243 7.2655 -0.0073 21 14 15.3174 4.5026 -0.0075 22 1 15.5506 4.0662 -1.4077 23 1 16.6204 4.6409 0.6912 24 1 14.4845 3.4927 0.6936 25 6 4.2648 2.5242 -0.0009 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.9879 -0.8370 -0.0016 30 1 6.2325 4.3077 -0.0004 31 1 8.4561 5.0187 -0.0016 32 1 10.4296 3.2034 0.8858 33 1 10.4281 3.2049 -0.8941 34 1 12.7822 4.1697 -0.0063 35 1 16.0939 7.2361 -0.0078 36 1 3.7911 3.4948 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558379962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:34 Heat of formation + Delta-G solvation = -131.720105 kcal Electronic energy + Delta-G solvation = -23596.959669 eV Core-core repulsion = 19593.650893 eV Total energy + Delta-G solvation = -4003.308776 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67919 -41.38220 -40.28774 -38.56108 -37.36135 -36.34502 -35.64294 -35.47549 -33.82729 -30.73705 -29.21556 -28.35558 -26.30564 -25.84335 -23.19586 -22.52767 -21.48843 -21.05230 -20.63216 -19.66354 -18.80033 -18.56949 -17.49319 -17.39987 -17.38494 -17.14038 -17.02401 -16.59775 -15.98112 -15.88444 -15.74473 -14.92913 -14.77603 -14.65380 -14.34211 -14.09168 -14.02842 -13.87951 -13.70872 -13.57214 -12.97852 -12.95652 -12.43342 -12.33560 -11.99104 -11.96205 -11.81753 -11.80665 -11.56659 -11.11198 -10.65870 -10.40222 -10.29648 -9.49775 -9.10482 -8.44493 -6.06925 -0.28214 0.28172 0.62133 0.93073 1.23916 1.33016 1.35938 1.46185 1.78496 1.84056 1.85451 2.11603 2.22069 2.73132 3.09155 3.12129 3.93626 3.98066 4.02958 4.29535 4.32264 4.35041 4.39074 4.44438 4.52721 4.72639 4.75373 5.02555 5.10122 5.25799 5.29606 5.48052 5.63271 5.89067 6.49167 6.65625 6.69177 6.79544 7.13487 7.30396 7.79200 8.71804 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.043471 B = 0.001949 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.958364 B =14364.391163 C =14987.899896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.531 3.469 4 O -0.541 6.541 5 C -0.155 4.155 6 C -0.219 4.219 7 S 0.334 5.666 8 C 0.025 3.975 9 N -0.641 5.641 10 C 0.704 3.296 11 O -0.588 6.588 12 N -0.713 5.713 13 C 0.137 3.863 14 C 0.444 3.556 15 O -0.616 6.616 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.062 0.938 19 C -0.009 4.009 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.276 1.276 24 H -0.229 1.229 25 C -0.149 4.149 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.201 0.799 30 H 0.429 0.571 31 H 0.414 0.586 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.393 0.607 35 H 0.281 0.719 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.619 -20.780 0.051 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.376 3.624 4 O -0.433 6.433 5 C -0.172 4.172 6 C -0.358 4.358 7 S 0.597 5.403 8 C -0.188 4.188 9 N -0.289 5.289 10 C 0.403 3.597 11 O -0.468 6.468 12 N -0.370 5.370 13 C 0.009 3.991 14 C 0.231 3.769 15 O -0.502 6.502 16 N -0.216 5.216 17 C -0.461 4.461 18 H 0.081 0.919 19 C -0.209 4.209 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.201 1.201 24 H -0.152 1.152 25 C -0.180 4.180 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.218 0.782 30 H 0.269 0.731 31 H 0.253 0.747 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.229 0.771 35 H 0.090 0.910 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.216 -21.409 0.061 30.140 hybrid contribution -1.077 1.863 -0.010 2.152 sum -22.293 -19.546 0.051 29.648 Atomic orbital electron populations 1.23589 0.74266 1.05918 1.02599 1.86541 1.25200 1.31513 1.84024 1.20662 0.88572 0.81437 0.71763 1.90831 1.67494 1.37008 1.47957 1.18813 0.89662 0.93229 1.15475 1.26746 1.01890 1.04393 1.02733 1.84460 0.97433 0.91979 1.66478 1.21829 0.91329 0.95519 1.10158 1.41765 1.02521 1.09189 1.75450 1.15777 0.80689 0.84985 0.78204 1.90815 1.78430 1.18691 1.58891 1.44594 1.04973 1.09521 1.77867 1.20824 0.78667 0.93691 1.05881 1.20526 0.82805 0.91173 0.82371 1.90541 1.70120 1.33075 1.56463 1.41893 1.05513 1.08022 1.66186 1.19018 0.89869 0.86404 1.50822 0.91941 1.26086 0.96511 1.02585 0.95669 1.69784 1.08125 1.29470 1.49245 0.85439 0.78869 0.77703 0.80068 1.18110 1.20106 1.15188 1.20581 0.89951 0.99038 1.08457 0.91944 0.91935 0.84640 0.78153 0.73140 0.74736 0.87119 0.87044 0.77094 0.90964 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.36 -6.13 10.21 -57.13 -0.58 -6.71 16 3 C 0.53 11.68 7.92 70.12 0.56 12.23 16 4 O -0.54 -14.78 16.59 19.62 0.33 -14.46 16 5 C -0.16 -3.14 5.98 -19.88 -0.12 -3.26 16 6 C -0.22 -3.50 10.54 67.30 0.71 -2.79 16 7 S 0.33 6.19 20.06 -56.49 -1.13 5.06 16 8 C 0.03 0.52 7.11 82.34 0.59 1.10 16 9 N -0.64 -12.80 5.44 -320.74 -1.74 -14.54 16 10 C 0.70 17.45 8.53 179.05 1.53 18.97 16 11 O -0.59 -16.52 13.81 -4.03 -0.06 -16.57 16 12 N -0.71 -18.60 5.53 -482.28 -2.67 -21.27 16 13 C 0.14 3.87 6.15 85.63 0.53 4.40 16 14 C 0.44 17.87 7.85 87.66 0.69 18.56 16 15 O -0.62 -29.96 15.24 -3.06 -0.05 -30.01 16 16 N -0.58 -24.95 5.09 -306.98 -1.56 -26.51 16 17 C -0.33 -18.25 10.16 84.04 0.85 -17.39 16 18 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 19 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 20 N -0.93 -53.46 13.96 21.66 0.30 -53.16 16 21 Si 0.96 36.62 27.73 68.60 1.90 38.52 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.23 -7.26 6.52 99.48 0.65 -6.61 16 25 C -0.15 -3.02 10.11 22.80 0.23 -2.79 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.20 2.12 8.01 -2.91 -0.02 2.10 16 30 H 0.43 6.43 8.81 -92.71 -0.82 5.62 16 31 H 0.41 10.89 7.45 -92.71 -0.69 10.20 16 32 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.39 14.03 5.76 -92.71 -0.53 13.50 16 35 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -75.40 339.32 1.04 -74.36 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.92 Total: 34.72 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 7.22 Total: 30.58 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.67 Total: -115.48 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -0.36 Total: -67.75 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 1.90 Total: 38.52 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.13 Total: 5.06 kcal Total: -75.40 1.04 -74.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558379962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.360 kcal (2) G-P(sol) polarization free energy of solvation -75.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds