Wall clock time and date at job start Fri Apr 10 2020 18:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00413 * 2 1 4 4 C 1.52996 * 109.47240 * 274.99968 * 3 2 1 5 5 C 1.50694 * 109.47512 * 179.97438 * 4 3 2 6 6 O 1.20821 * 119.99945 * 359.97438 * 5 4 3 7 7 O 1.34228 * 120.00130 * 179.97438 * 5 4 3 8 8 S 1.65599 * 119.99887 * 179.97438 * 2 1 3 9 9 O 1.42101 * 104.27827 * 153.93061 * 8 2 1 10 10 O 1.42094 * 104.27842 * 26.07361 * 8 2 1 11 11 C 1.81409 * 104.44840 * 270.00090 * 8 2 1 12 12 C 1.50707 * 109.47007 * 179.97438 * 11 8 2 13 13 C 1.38635 * 119.74865 * 270.25543 * 12 11 8 14 14 C 1.37613 * 120.24483 * 180.26071 * 13 12 11 15 15 C 1.40709 * 119.74954 * 359.46596 * 14 13 12 16 16 C 1.41391 * 120.24881 * 180.29949 * 15 14 13 17 17 H 1.08006 * 120.00159 * 24.38124 * 16 15 14 18 18 C 1.39949 * 120.00394 * 204.37955 * 16 15 14 19 19 N 1.30826 * 119.99793 * 17.83971 * 18 16 15 20 20 Si 1.86793 * 120.00334 * 197.84214 * 18 16 15 21 21 H 1.48504 * 109.47163 * 59.99946 * 20 18 16 22 22 H 1.48493 * 109.47398 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47268 * 300.00028 * 20 18 16 24 24 C 1.40717 * 119.50871 * 0.27696 * 15 14 13 25 25 C 1.37615 * 119.74803 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47575 * 270.00399 * 1 2 3 27 27 H 1.09008 * 109.46911 * 29.99966 * 1 2 3 28 28 H 1.09001 * 109.47323 * 149.99754 * 1 2 3 29 29 H 1.09002 * 109.46745 * 34.99323 * 3 2 1 30 30 H 1.09002 * 109.47215 * 154.99682 * 3 2 1 31 31 H 1.09004 * 109.47140 * 300.00222 * 4 3 2 32 32 H 1.09006 * 109.47068 * 59.99245 * 4 3 2 33 33 H 0.96704 * 116.99715 * 179.97438 * 7 5 4 34 34 H 1.08994 * 109.47050 * 60.00105 * 11 8 2 35 35 H 1.09000 * 109.47163 * 299.99679 * 11 8 2 36 36 H 1.07998 * 119.87355 * 0.02562 * 13 12 11 37 37 H 1.08008 * 120.12380 * 179.73700 * 14 13 12 38 38 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.12753 * 180.02562 * 24 15 14 40 40 H 1.08003 * 119.88271 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 6 3.0967 3.0785 -1.4370 6 8 3.4770 3.5566 -0.3946 7 8 3.3449 3.7102 -2.5951 8 16 2.2929 -1.4341 0.0006 9 8 3.5394 -1.1194 -0.6047 10 8 1.3969 -2.3563 -0.6042 11 6 2.5192 -1.8254 1.7575 12 6 3.2692 -3.1258 1.8900 13 6 2.5692 -4.3211 1.9455 14 6 3.2435 -5.5141 2.0719 15 6 4.6492 -5.5184 2.1334 16 6 5.3530 -6.7385 2.2568 17 1 4.9006 -7.6594 1.9195 18 6 6.6358 -6.7530 2.8159 19 7 7.0486 -5.7391 3.5323 20 14 7.7588 -8.2198 2.5392 21 1 7.9998 -8.3912 1.0839 22 1 9.0526 -7.9902 3.2310 23 1 7.1171 -9.4439 3.0822 24 6 5.3495 -4.2995 2.0707 25 6 4.6543 -3.1180 1.9496 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 1.6501 2.0043 0.5894 30 1 3.1858 1.1176 0.4344 31 1 2.8910 1.0376 -2.0264 32 1 1.3554 1.9242 -1.8713 33 1 3.8310 4.5447 -2.5445 34 1 1.5450 -1.9177 2.2376 35 1 3.0865 -1.0278 2.2372 36 1 1.4905 -4.3157 1.8933 37 1 2.6959 -6.4438 2.1192 38 1 7.9376 -5.7493 3.9202 39 1 6.4285 -4.2912 2.1166 40 1 5.1896 -2.1813 1.9009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580952197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:43 Heat of formation + Delta-G solvation = -150.293453 kcal Electronic energy + Delta-G solvation = -25291.836051 eV Core-core repulsion = 21391.262218 eV Total energy + Delta-G solvation = -3900.573833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48503 -37.79576 -37.01333 -36.71839 -36.19968 -35.47132 -34.18207 -31.59434 -31.48197 -29.44919 -27.86921 -26.87438 -24.40696 -23.93476 -21.27607 -21.16739 -20.33518 -18.75865 -18.25010 -17.58301 -17.44992 -16.97786 -16.24284 -16.02137 -15.83487 -15.40303 -14.53857 -14.43421 -14.26824 -13.95432 -13.81920 -13.72551 -13.27335 -12.71828 -12.58708 -12.48500 -12.16487 -12.08340 -11.90241 -11.77927 -11.75169 -11.65417 -11.59219 -11.40223 -11.15900 -11.14704 -10.85854 -10.82608 -10.78113 -10.28964 -9.84624 -9.53952 -9.31449 -9.13939 -7.62615 -7.45930 -6.93392 -4.50736 0.51661 1.96600 2.61066 2.65451 2.94939 2.99875 3.01702 3.05190 3.11476 3.81666 4.16732 4.42425 4.46207 4.49248 4.60085 4.86317 5.08341 5.17655 5.28784 5.30585 5.36830 5.43324 5.53292 5.65099 5.72114 5.88486 6.06155 6.19084 6.23650 6.25088 6.46456 6.82527 6.90471 7.08923 7.17536 7.44873 7.62972 7.65545 7.88896 7.89582 8.11709 8.46693 8.71072 8.79184 9.99740 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.002820 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.008462 B = 9928.451643 C =10727.602127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.012 6.012 3 C 0.138 3.862 4 C -0.139 4.139 5 C 0.487 3.513 6 O -0.517 6.517 7 O -0.518 6.518 8 S 2.570 3.430 9 O -0.959 6.959 10 O -0.959 6.959 11 C -0.517 4.517 12 C -0.238 4.238 13 C -0.068 4.068 14 C -0.226 4.226 15 C 0.118 3.882 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.074 3.926 19 N -0.781 5.781 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.166 4.166 25 C -0.080 4.080 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.410 0.590 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.123 0.877 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 14.137 -5.700 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.847 5.847 3 C 0.011 3.989 4 C -0.178 4.178 5 C 0.329 3.671 6 O -0.405 6.405 7 O -0.330 6.330 8 S 2.672 3.328 9 O -0.949 6.949 10 O -0.950 6.950 11 C -0.648 4.648 12 C -0.244 4.244 13 C -0.087 4.087 14 C -0.246 4.246 15 C 0.114 3.886 16 C -0.477 4.477 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.405 5.405 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.186 4.186 25 C -0.100 4.100 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.269 0.731 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.342 13.622 -6.113 17.103 hybrid contribution 0.727 0.259 0.676 1.026 sum -7.615 13.881 -5.437 16.740 Atomic orbital electron populations 1.21578 0.78826 1.04018 1.01982 1.57874 1.15120 1.21378 1.90346 1.20938 0.98049 0.85882 0.93989 1.21888 1.01857 0.92221 1.01833 1.23345 0.76790 0.86148 0.80821 1.90735 1.49669 1.66764 1.33332 1.84546 1.71626 1.40347 1.36438 1.07005 0.73698 0.72460 0.79681 1.93528 1.43846 1.82635 1.74878 1.93510 1.64754 1.61751 1.74966 1.28927 1.08440 1.05643 1.21793 1.18110 0.93320 0.90044 1.22913 1.20470 0.97382 0.92485 0.98389 1.20985 0.94320 0.95968 1.13298 1.17734 0.90995 0.93335 0.86522 1.19723 0.98959 0.94912 1.34095 0.89884 1.26022 0.98423 0.97698 0.92477 1.69808 1.19030 1.30396 1.21238 0.86274 0.78773 0.81234 0.80005 1.18545 1.20156 1.18798 1.21325 0.99916 0.91389 1.05949 1.20615 0.92569 0.97624 0.99203 0.92703 0.91168 0.89620 0.89498 0.88918 0.86408 0.87285 0.73123 0.86133 0.86052 0.88653 0.88294 0.90373 0.85933 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.66 59.84 0.64 1.37 16 2 N -1.01 -11.88 3.12 -121.76 -0.38 -12.26 16 3 C 0.14 1.47 4.53 -4.04 -0.02 1.45 16 4 C -0.14 -1.36 6.13 -27.89 -0.17 -1.53 16 5 C 0.49 5.00 8.33 36.00 0.30 5.30 16 6 O -0.52 -6.69 16.74 -18.75 -0.31 -7.00 16 7 O -0.52 -4.12 13.42 -39.25 -0.53 -4.65 16 8 S 2.57 42.27 5.35 -107.50 -0.58 41.70 16 9 O -0.96 -18.40 16.75 -57.54 -0.96 -19.36 16 10 O -0.96 -18.27 16.57 -57.54 -0.95 -19.23 16 11 C -0.52 -8.41 6.29 36.01 0.23 -8.19 16 12 C -0.24 -5.14 5.16 -104.32 -0.54 -5.68 16 13 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 14 C -0.23 -5.47 9.80 -38.88 -0.38 -5.85 16 15 C 0.12 3.08 5.57 -106.83 -0.60 2.48 16 16 C -0.45 -11.49 9.05 -37.74 -0.34 -11.84 16 17 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 18 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 19 N -0.78 -19.42 10.95 55.55 0.61 -18.81 16 20 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 25 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.46 8.07 -51.92 -0.42 0.04 16 28 H 0.09 0.86 6.91 -51.93 -0.36 0.50 16 29 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.09 1.09 7.57 -51.93 -0.39 0.70 16 31 H 0.12 1.30 7.90 -51.93 -0.41 0.89 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.41 1.51 9.10 45.56 0.41 1.92 16 34 H 0.12 1.64 8.08 -51.93 -0.42 1.22 16 35 H 0.12 1.71 8.08 -51.92 -0.42 1.29 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 38 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 39 H 0.12 3.21 6.16 -52.48 -0.32 2.89 16 40 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -33.28 359.13 -9.21 -42.49 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.41 Total: 8.32 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -2.08 Total: -29.54 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.23 Total: -31.07 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.76 Total: -50.24 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 42.27 SS G_CDS: -0.58 Total: 41.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.28 -9.21 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580952197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.806 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds