Wall clock time and date at job start Fri Apr 10 2020 18:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00206 * 2 1 4 4 C 1.53005 * 109.47110 * 180.02562 * 3 2 1 5 5 O 1.42899 * 113.27927 * 313.05990 * 4 3 2 6 6 C 1.53503 * 114.20380 * 179.97438 * 4 3 2 7 7 N 1.47068 * 87.98180 * 220.34035 * 6 4 3 8 8 S 1.65595 * 136.05623 * 207.08061 * 7 6 4 9 9 O 1.42097 * 106.40418 * 336.46981 * 8 7 6 10 10 O 1.42098 * 106.40441 * 203.54076 * 8 7 6 11 11 C 1.76206 * 107.21671 * 90.00349 * 8 7 6 12 12 C 1.38660 * 119.87251 * 90.00095 * 11 8 7 13 13 C 1.38617 * 120.49865 * 179.74762 * 12 11 8 14 14 C 1.37632 * 120.24740 * 0.22804 * 13 12 11 15 15 C 1.40694 * 119.74668 * 0.02730 * 14 13 12 16 16 C 1.41395 * 120.24448 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00526 * 155.26371 * 16 15 14 18 18 C 1.39943 * 120.00183 * 335.26054 * 16 15 14 19 19 N 1.30828 * 119.99835 * 342.25873 * 18 16 15 20 20 Si 1.86799 * 120.00424 * 162.25903 * 18 16 15 21 21 H 1.48493 * 109.47473 * 89.99838 * 20 18 16 22 22 H 1.48504 * 109.47342 * 210.00410 * 20 18 16 23 23 H 1.48507 * 109.46862 * 329.99571 * 20 18 16 24 24 C 1.37592 * 119.87870 * 270.25785 * 11 8 7 25 25 C 1.47072 * 87.88443 * 27.34207 * 7 6 4 26 26 H 1.09004 * 109.47058 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46781 * 300.00196 * 1 2 3 28 28 H 1.08997 * 109.46906 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.47571 * 59.99612 * 3 2 1 30 30 H 1.09006 * 109.46890 * 299.99907 * 3 2 1 31 31 H 0.96696 * 113.99856 * 46.93597 * 5 4 3 32 32 H 1.09000 * 113.46300 * 105.56152 * 6 4 3 33 33 H 1.08997 * 113.52076 * 335.13149 * 6 4 3 34 34 H 1.08001 * 119.75046 * 0.02562 * 12 11 8 35 35 H 1.08001 * 119.87306 * 180.25713 * 13 12 11 36 36 H 1.08008 * 120.12726 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99953 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.12941 * 359.97438 * 24 11 8 39 39 H 1.09005 * 113.46488 * 87.43636 * 25 7 6 40 40 H 1.08998 * 113.46719 * 217.87538 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 8 4.0281 0.2463 0.9581 6 6 4.2735 2.5305 -0.0013 7 7 5.2305 1.9463 -0.9530 8 16 6.8192 2.1933 -1.3497 9 8 7.1259 3.5267 -0.9661 10 8 6.9817 1.7091 -2.6757 11 6 7.7845 1.1434 -0.3149 12 6 8.0934 -0.1424 -0.7318 13 6 8.8563 -0.9775 0.0696 14 6 9.3118 -0.5391 1.2921 15 6 8.9999 0.7618 1.7277 16 6 9.4620 1.2229 2.9819 17 1 9.5845 2.2817 3.1565 18 6 9.7605 0.3073 3.9974 19 7 9.3000 -0.9155 3.9316 20 14 10.8164 0.8311 5.4466 21 1 9.9468 1.3654 6.5251 22 1 11.5739 -0.3402 5.9560 23 1 11.7681 1.8844 5.0105 24 6 8.2243 1.6008 0.9059 25 6 4.1538 1.0506 -1.4019 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.5611 -0.6004 0.9556 32 1 4.7178 2.7824 0.9616 33 1 3.6874 3.3477 -0.4216 34 1 7.7408 -0.4945 -1.6900 35 1 9.0944 -1.9758 -0.2669 36 1 9.9064 -1.1913 1.9148 37 1 9.5066 -1.5500 4.6356 38 1 7.9794 2.6013 1.2303 39 1 3.5355 1.4771 -2.1918 40 1 4.4962 0.0418 -1.6323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590760332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:02 Heat of formation + Delta-G solvation = -103.060051 kcal Electronic energy + Delta-G solvation = -26134.783994 eV Core-core repulsion = 22236.258355 eV Total energy + Delta-G solvation = -3898.525639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14731 -37.68875 -37.55579 -36.62374 -35.29260 -35.02754 -33.77385 -30.00408 -29.89877 -29.70490 -26.98621 -26.09268 -25.41027 -24.83348 -21.80754 -20.91758 -20.40827 -18.65553 -17.96977 -17.13533 -16.99729 -16.78506 -16.16932 -15.89872 -15.47536 -15.22269 -14.82249 -14.62471 -14.23345 -13.98037 -13.81935 -13.39753 -13.28768 -13.06703 -12.61717 -12.51584 -12.01937 -11.85468 -11.67608 -11.58797 -11.56381 -11.53553 -11.35519 -11.30681 -10.94589 -10.84872 -10.61931 -10.55840 -10.11789 -9.84041 -9.69380 -9.53590 -9.28236 -8.86953 -7.94962 -7.61909 -6.85787 -4.46171 0.93348 2.27824 2.70582 3.03574 3.06302 3.13137 3.30861 3.47196 3.87918 3.90905 4.24587 4.32577 4.49080 4.63988 4.67813 4.86840 5.03743 5.06398 5.16673 5.28189 5.36671 5.37955 5.49280 5.54870 5.69592 5.82496 5.99856 6.20870 6.24208 6.53207 6.71534 6.76417 6.83269 6.96678 7.10819 7.29530 7.46069 7.77197 7.79818 7.87520 8.01512 8.47105 8.73962 8.79285 10.09858 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.004102 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.217693 B = 6824.506115 C = 7949.592694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.045 3.955 4 C 0.100 3.900 5 O -0.514 6.514 6 C 0.142 3.858 7 N -1.036 6.036 8 S 2.714 3.286 9 O -0.968 6.968 10 O -0.971 6.971 11 C -0.624 4.624 12 C -0.144 4.144 13 C -0.121 4.121 14 C -0.117 4.117 15 C 0.093 3.907 16 C -0.462 4.462 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.119 4.119 25 C 0.106 3.894 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.386 0.614 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.282 0.718 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 1.114 -4.711 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.033 4.033 4 C 0.055 3.945 5 O -0.320 6.320 6 C 0.016 3.984 7 N -0.872 5.872 8 S 2.813 3.187 9 O -0.958 6.958 10 O -0.962 6.962 11 C -0.717 4.717 12 C -0.165 4.165 13 C -0.140 4.140 14 C -0.137 4.137 15 C 0.090 3.910 16 C -0.491 4.491 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.141 4.141 25 C -0.020 4.020 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.631 1.864 -5.174 15.631 hybrid contribution -0.015 -0.694 1.122 1.320 sum -14.646 1.170 -4.052 15.241 Atomic orbital electron populations 1.22753 0.80476 1.02958 1.00060 1.87791 1.20195 1.27507 1.95478 1.23112 0.93136 0.85527 1.01568 1.22622 0.89065 0.92681 0.90087 1.86618 1.61236 1.27616 1.56538 1.22464 0.88339 0.93432 0.94149 1.59938 1.23990 1.50739 1.52525 1.00945 0.70583 0.73685 0.73462 1.93515 1.82570 1.35346 1.84410 1.93500 1.84776 1.82395 1.35510 1.29674 1.19225 1.10670 1.12117 1.20032 1.04577 0.92642 0.99295 1.20780 0.99815 0.97906 0.95504 1.21605 1.00144 0.97613 0.94324 1.17651 0.89308 0.91629 0.92431 1.19587 1.38756 0.94822 0.95940 0.90022 1.25915 0.94102 0.94391 0.99803 1.69794 1.34154 1.05128 1.32836 0.86280 0.80478 0.79411 0.80427 1.19369 1.20033 1.18341 1.20738 1.00301 0.99639 0.93422 1.23208 0.86917 0.95384 0.96504 0.89461 0.93924 0.93962 0.91815 0.91706 0.76503 0.88910 0.88601 0.87860 0.88462 0.85822 0.90676 0.87277 0.89406 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.68 9.85 -48.14 -0.47 -4.15 16 3 C 0.04 0.39 5.68 37.16 0.21 0.60 16 4 C 0.10 1.21 1.84 -89.97 -0.17 1.04 16 5 O -0.51 -7.73 13.57 -48.14 -0.65 -8.38 16 6 C 0.14 1.85 8.15 -8.50 -0.07 1.78 16 7 N -1.04 -16.81 4.23 -124.99 -0.53 -17.34 16 8 S 2.71 55.05 6.27 -107.50 -0.67 54.38 16 9 O -0.97 -21.42 17.27 -57.17 -0.99 -22.40 16 10 O -0.97 -20.98 17.27 -57.17 -0.99 -21.97 16 11 C -0.62 -14.56 5.96 -39.66 -0.24 -14.79 16 12 C -0.14 -3.33 9.53 -39.29 -0.37 -3.70 16 13 C -0.12 -2.84 10.02 -39.66 -0.40 -3.24 16 14 C -0.12 -3.03 8.70 -38.88 -0.34 -3.37 16 15 C 0.09 2.51 5.57 -106.83 -0.60 1.91 16 16 C -0.46 -12.23 9.05 -37.74 -0.34 -12.57 16 17 H 0.08 2.08 7.91 -52.48 -0.41 1.67 16 18 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 19 N -0.79 -20.16 10.97 55.55 0.61 -19.56 16 20 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.12 -3.02 9.26 -38.88 -0.36 -3.38 16 25 C 0.11 1.36 8.17 -8.37 -0.07 1.29 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.43 7.89 -51.93 -0.41 0.02 16 31 H 0.39 4.64 8.23 45.56 0.37 5.02 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 35 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.12 3.23 6.18 -52.48 -0.32 2.90 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 38 H 0.11 2.66 7.61 -52.49 -0.40 2.26 16 39 H 0.09 0.87 7.93 -51.93 -0.41 0.46 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -33.59 355.07 -9.58 -43.17 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.50 Total: 8.76 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -1.71 Total: -31.30 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.08 Total: -36.90 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -3.10 Total: -56.91 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.67 Total: 54.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.59 -9.58 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590760332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.889 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds