Wall clock time and date at job start Fri Apr 10 2020 18:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00206 * 2 1 4 4 C 1.53005 * 109.47110 * 180.02562 * 3 2 1 5 5 O 1.42899 * 113.27927 * 313.05990 * 4 3 2 6 6 C 1.53503 * 114.20380 * 179.97438 * 4 3 2 7 7 N 1.47068 * 87.98180 * 220.34035 * 6 4 3 8 8 S 1.65595 * 136.05623 * 207.08061 * 7 6 4 9 9 O 1.42097 * 106.40418 * 336.46981 * 8 7 6 10 10 O 1.42098 * 106.40441 * 203.54076 * 8 7 6 11 11 C 1.76206 * 107.21671 * 90.00349 * 8 7 6 12 12 C 1.38660 * 119.87251 * 90.00095 * 11 8 7 13 13 C 1.38617 * 120.49865 * 179.74762 * 12 11 8 14 14 C 1.37632 * 120.24740 * 0.22804 * 13 12 11 15 15 C 1.40694 * 119.74668 * 0.02730 * 14 13 12 16 16 C 1.41395 * 120.24448 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00526 * 155.26371 * 16 15 14 18 18 C 1.39943 * 120.00183 * 335.26054 * 16 15 14 19 19 N 1.30828 * 119.99835 * 342.25873 * 18 16 15 20 20 Si 1.86799 * 120.00424 * 162.25903 * 18 16 15 21 21 H 1.48493 * 109.47473 * 89.99838 * 20 18 16 22 22 H 1.48504 * 109.47342 * 210.00410 * 20 18 16 23 23 H 1.48507 * 109.46862 * 329.99571 * 20 18 16 24 24 C 1.37592 * 119.87870 * 270.25785 * 11 8 7 25 25 C 1.47072 * 87.88443 * 27.34207 * 7 6 4 26 26 H 1.09004 * 109.47058 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46781 * 300.00196 * 1 2 3 28 28 H 1.08997 * 109.46906 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.47571 * 59.99612 * 3 2 1 30 30 H 1.09006 * 109.46890 * 299.99907 * 3 2 1 31 31 H 0.96696 * 113.99856 * 46.93597 * 5 4 3 32 32 H 1.09000 * 113.46300 * 105.56152 * 6 4 3 33 33 H 1.08997 * 113.52076 * 335.13149 * 6 4 3 34 34 H 1.08001 * 119.75046 * 0.02562 * 12 11 8 35 35 H 1.08001 * 119.87306 * 180.25713 * 13 12 11 36 36 H 1.08008 * 120.12726 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99953 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.12941 * 359.97438 * 24 11 8 39 39 H 1.09005 * 113.46488 * 87.43636 * 25 7 6 40 40 H 1.08998 * 113.46719 * 217.87538 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 8 4.0281 0.2463 0.9581 6 6 4.2735 2.5305 -0.0013 7 7 5.2305 1.9463 -0.9530 8 16 6.8192 2.1933 -1.3497 9 8 7.1259 3.5267 -0.9661 10 8 6.9817 1.7091 -2.6757 11 6 7.7845 1.1434 -0.3149 12 6 8.0934 -0.1424 -0.7318 13 6 8.8563 -0.9775 0.0696 14 6 9.3118 -0.5391 1.2921 15 6 8.9999 0.7618 1.7277 16 6 9.4620 1.2229 2.9819 17 1 9.5845 2.2817 3.1565 18 6 9.7605 0.3073 3.9974 19 7 9.3000 -0.9155 3.9316 20 14 10.8164 0.8311 5.4466 21 1 9.9468 1.3654 6.5251 22 1 11.5739 -0.3402 5.9560 23 1 11.7681 1.8844 5.0105 24 6 8.2243 1.6008 0.9059 25 6 4.1538 1.0506 -1.4019 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.5611 -0.6004 0.9556 32 1 4.7178 2.7824 0.9616 33 1 3.6874 3.3477 -0.4216 34 1 7.7408 -0.4945 -1.6900 35 1 9.0944 -1.9758 -0.2669 36 1 9.9064 -1.1913 1.9148 37 1 9.5066 -1.5500 4.6356 38 1 7.9794 2.6013 1.2303 39 1 3.5355 1.4771 -2.1918 40 1 4.4962 0.0418 -1.6323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590760332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:02 Heat of formation + Delta-G solvation = -129.584895 kcal Electronic energy + Delta-G solvation = -26135.934197 eV Core-core repulsion = 22236.258355 eV Total energy + Delta-G solvation = -3899.675843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13875 -39.45598 -38.37071 -38.31137 -36.98623 -36.13608 -35.67813 -31.93395 -31.60664 -30.78470 -27.68495 -27.36873 -27.08496 -25.66276 -23.66157 -22.82578 -21.45187 -20.24127 -19.55683 -18.49574 -18.08932 -17.76909 -17.52156 -17.07521 -16.89318 -16.63036 -16.52528 -15.88001 -15.42610 -15.28543 -15.10102 -14.97053 -14.66613 -14.33278 -13.98374 -13.73446 -13.52113 -13.36948 -13.28121 -13.13776 -13.05535 -12.97931 -12.84148 -12.65240 -12.63265 -12.24744 -12.22523 -11.63835 -11.58032 -11.38731 -11.14738 -10.90796 -10.53908 -10.13045 -9.83648 -9.57074 -8.73541 -6.46290 -0.64130 0.39729 0.83251 1.36067 1.43673 1.51724 1.98717 2.17248 2.54533 2.66621 2.74690 2.97447 3.16714 3.38189 3.51487 3.86793 4.03906 4.24243 4.38650 4.45019 4.48462 4.53686 4.56161 4.61290 4.64914 4.70528 4.80025 4.84160 4.89703 4.90625 4.97986 5.10664 5.21795 5.39525 5.42680 5.54520 5.85973 5.91591 6.08601 6.20496 6.50525 6.78239 6.83293 6.84564 8.24793 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.004102 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.217693 B = 6824.506115 C = 7949.592694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.053 3.947 4 C 0.102 3.898 5 O -0.549 6.549 6 C 0.133 3.867 7 N -1.045 6.045 8 S 2.744 3.256 9 O -0.990 6.990 10 O -0.983 6.983 11 C -0.635 4.635 12 C -0.149 4.149 13 C -0.122 4.122 14 C -0.140 4.140 15 C 0.065 3.935 16 C -0.500 4.500 17 H 0.078 0.922 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.260 1.260 24 C -0.144 4.144 25 C 0.101 3.899 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.292 0.708 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.591 1.311 -5.195 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.025 4.025 4 C 0.058 3.942 5 O -0.357 6.357 6 C 0.008 3.992 7 N -0.885 5.885 8 S 2.840 3.160 9 O -0.980 6.980 10 O -0.974 6.974 11 C -0.724 4.724 12 C -0.170 4.170 13 C -0.141 4.141 14 C -0.160 4.160 15 C 0.062 3.938 16 C -0.529 4.529 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.446 5.446 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.186 1.186 23 H -0.184 1.184 24 C -0.165 4.165 25 C -0.024 4.024 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.245 0.755 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.534 2.026 -5.653 17.591 hybrid contribution 0.410 -0.791 1.189 1.486 sum -16.124 1.235 -4.463 16.776 Atomic orbital electron populations 1.22920 0.78877 1.03796 1.01114 1.87756 1.21900 1.27924 1.95721 1.23025 0.90172 0.85734 1.03526 1.22681 0.91411 0.91244 0.88871 1.86576 1.62546 1.28752 1.57786 1.22933 0.87798 0.95427 0.93052 1.59623 1.23153 1.52109 1.53635 0.99936 0.71153 0.72477 0.72433 1.93478 1.83747 1.36220 1.84602 1.93473 1.85696 1.82456 1.35759 1.30277 1.19043 1.11381 1.11687 1.20392 1.03984 0.92593 1.00039 1.21123 0.98980 0.99335 0.94664 1.21614 1.01459 0.97489 0.95462 1.18027 0.89985 0.92568 0.93252 1.19846 1.40895 0.95210 0.96949 0.90419 1.26766 0.94593 0.94126 1.02264 1.69828 1.34578 1.06109 1.34112 0.85173 0.78498 0.79257 0.76636 1.18466 1.18589 1.18424 1.20796 1.01349 0.99658 0.94688 1.23627 0.85844 0.94760 0.98145 0.88882 0.93290 0.92436 0.90875 0.88644 0.75519 0.90859 0.83967 0.85573 0.85503 0.86770 0.89695 0.87669 0.85384 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.72 9.85 -136.63 -1.35 -8.07 16 3 C 0.05 0.75 5.68 71.98 0.41 1.16 16 4 C 0.10 2.26 1.84 -10.37 -0.02 2.25 16 5 O -0.55 -16.40 13.57 -136.63 -1.85 -18.26 16 6 C 0.13 3.20 8.15 83.18 0.68 3.88 16 7 N -1.05 -32.44 4.23 -549.83 -2.33 -34.77 16 8 S 2.74 110.38 6.27 -56.49 -0.35 110.02 16 9 O -0.99 -43.99 17.27 -128.00 -2.21 -46.20 16 10 O -0.98 -41.40 17.27 -128.00 -2.21 -43.61 16 11 C -0.63 -30.15 5.96 22.22 0.13 -30.02 16 12 C -0.15 -6.90 9.53 22.46 0.21 -6.69 16 13 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 14 C -0.14 -7.53 8.70 22.73 0.20 -7.33 16 15 C 0.06 3.65 5.57 -21.29 -0.12 3.53 16 16 C -0.50 -27.66 9.05 23.46 0.21 -27.45 16 17 H 0.08 4.17 7.91 -2.91 -0.02 4.15 16 18 C 0.04 1.93 5.14 85.26 0.44 2.37 16 19 N -0.82 -42.59 10.97 21.83 0.24 -42.35 16 20 Si 0.98 38.21 29.59 68.60 2.03 40.24 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 C -0.14 -7.60 9.26 22.73 0.21 -7.39 16 25 C 0.10 2.34 8.17 83.27 0.68 3.02 16 26 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.79 7.89 -2.38 -0.02 0.77 16 31 H 0.39 9.50 8.23 -74.06 -0.61 8.89 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.14 2.10 8.10 -2.39 -0.02 2.08 16 34 H 0.13 5.17 7.60 -2.91 -0.02 5.15 16 35 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 36 H 0.11 6.21 6.18 -2.91 -0.02 6.19 16 37 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 38 H 0.11 5.44 7.61 -2.91 -0.02 5.42 16 39 H 0.13 1.95 7.93 -2.38 -0.02 1.93 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -74.94 355.07 -3.06 -78.00 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.46 Total: 31.71 kcal Atomic # 6 Polarization: -71.22 SS G_CDS: 4.51 Total: -66.72 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.09 Total: -77.12 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -7.62 Total: -116.14 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 16 Polarization: 110.38 SS G_CDS: -0.35 Total: 110.02 kcal Total: -74.94 -3.06 -78.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590760332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.583 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds