Wall clock time and date at job start Fri Apr 10 2020 18:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00191 * 2 1 4 4 H 1.08999 * 110.45542 * 27.39381 * 3 2 1 5 5 C 1.54484 * 110.62383 * 264.70928 * 3 2 1 6 6 O 1.44424 * 104.80522 * 265.27485 * 5 3 2 7 7 C 1.44427 * 105.27149 * 319.49031 * 6 5 3 8 8 C 1.54476 * 104.80453 * 40.51265 * 7 6 5 9 9 H 1.09001 * 110.62682 * 217.31346 * 8 7 6 10 10 N 1.46503 * 110.51175 * 94.66225 * 8 7 6 11 11 S 1.65598 * 119.99850 * 100.35685 * 10 8 7 12 12 O 1.42101 * 106.40164 * 311.46020 * 11 10 8 13 13 O 1.42103 * 106.40351 * 178.54295 * 11 10 8 14 14 C 1.76201 * 107.21901 * 64.99923 * 11 10 8 15 15 C 1.38651 * 119.87409 * 90.00162 * 14 11 10 16 16 C 1.38617 * 120.50144 * 179.97438 * 15 14 11 17 17 C 1.37633 * 120.24979 * 0.02562 * 16 15 14 18 18 C 1.40702 * 119.74087 * 359.97438 * 17 16 15 19 19 C 1.41402 * 120.24183 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00026 * 204.38058 * 19 18 17 21 21 C 1.39948 * 119.99922 * 24.39219 * 19 18 17 22 22 N 1.30820 * 119.99960 * 17.84149 * 21 19 18 23 23 Si 1.86797 * 119.99870 * 197.85213 * 21 19 18 24 24 H 1.48505 * 109.47252 * 59.99063 * 23 21 19 25 25 H 1.48495 * 109.47475 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46916 * 299.99854 * 23 21 19 27 27 C 1.37597 * 119.87527 * 269.72468 * 14 11 10 28 28 H 1.08997 * 109.47411 * 60.00035 * 1 2 3 29 29 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46795 * 299.99741 * 1 2 3 31 31 H 1.09005 * 110.37168 * 24.11190 * 5 3 2 32 32 H 1.08995 * 110.36912 * 146.44090 * 5 3 2 33 33 H 1.08994 * 110.37335 * 281.67666 * 7 6 5 34 34 H 1.09008 * 110.36662 * 159.34404 * 7 6 5 35 35 H 0.96998 * 120.00178 * 280.35938 * 10 8 7 36 36 H 1.08001 * 119.75342 * 359.95493 * 15 14 11 37 37 H 1.07998 * 119.87661 * 180.02562 * 16 15 14 38 38 H 1.07997 * 120.13042 * 179.97438 * 17 16 15 39 39 H 0.97008 * 119.99669 * 180.02562 * 22 21 19 40 40 H 1.07997 * 120.12851 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3369 2.0223 0.4699 5 6 2.3534 1.7483 -1.4397 6 8 3.7415 1.3903 -1.6150 7 6 4.3817 1.7258 -0.3645 8 6 3.3753 1.2903 0.7235 9 1 3.3761 1.9978 1.5526 10 7 3.6880 -0.0589 1.2014 11 16 4.5032 -0.2635 2.6283 12 8 5.6232 0.6097 2.5793 13 8 4.6191 -1.6659 2.8266 14 6 3.4603 0.3366 3.9155 15 6 2.5686 -0.5228 4.5390 16 6 1.7425 -0.0646 5.5535 17 6 1.7990 1.2514 5.9526 18 6 2.7002 2.1324 5.3270 19 6 2.7674 3.4864 5.7290 20 1 3.1312 4.2362 5.0421 21 6 2.3629 3.8548 7.0171 22 7 2.2578 2.9479 7.9541 23 14 1.9727 5.6413 7.3983 24 1 0.8614 6.1020 6.5276 25 1 1.5702 5.7672 8.8221 26 1 3.1758 6.4751 7.1479 27 6 3.5380 1.6548 4.3021 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7305 1.2164 -2.1589 32 1 2.2227 2.8251 -1.5467 33 1 4.5622 2.7991 -0.3067 34 1 5.3172 1.1765 -0.2579 35 1 3.4176 -0.8322 0.6821 36 1 2.5170 -1.5569 4.2318 37 1 1.0520 -0.7428 6.0325 38 1 1.1543 1.6063 6.7429 39 1 1.9771 3.2033 8.8469 40 1 4.2368 2.3213 3.8184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:08 Heat of formation + Delta-G solvation = -139.183770 kcal Electronic energy + Delta-G solvation = -26607.654795 eV Core-core repulsion = 22707.562714 eV Total energy + Delta-G solvation = -3900.092081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97922 -37.68131 -37.06023 -36.63485 -35.28918 -34.44979 -33.88083 -30.12217 -29.93467 -29.82738 -28.21420 -26.63645 -25.52222 -22.87829 -21.92329 -21.30693 -20.95127 -19.21222 -18.00344 -17.44399 -17.25639 -16.30822 -16.15202 -15.94112 -15.38392 -15.32167 -14.88996 -14.71370 -14.61586 -14.47100 -13.59451 -13.41370 -13.37521 -12.73493 -12.60138 -12.41028 -11.98559 -11.83403 -11.74270 -11.59167 -11.52804 -11.43664 -11.37546 -11.32593 -11.08948 -11.06939 -10.89064 -10.65526 -10.30860 -9.90605 -9.78515 -9.53942 -9.38270 -9.03461 -8.07575 -7.74505 -6.96071 -4.58014 1.01533 2.16319 2.59743 2.96170 2.97712 3.03775 3.32042 3.72209 3.78822 3.84917 4.21435 4.34416 4.46448 4.70190 4.80288 4.97905 5.06681 5.17718 5.22543 5.28309 5.34199 5.38100 5.43403 5.57865 5.60942 5.81235 5.99727 6.05901 6.17061 6.58163 6.60429 6.71753 6.82523 6.99718 7.02392 7.17221 7.33414 7.36602 7.69298 7.75084 7.89771 8.35116 8.62722 8.67225 9.99475 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.004365 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.485448 B = 6412.417738 C = 6966.916231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.049 3.951 4 H 0.089 0.911 5 C 0.024 3.976 6 O -0.367 6.367 7 C 0.030 3.970 8 C 0.128 3.872 9 H 0.114 0.886 10 N -1.097 6.097 11 S 2.686 3.314 12 O -0.971 6.971 13 O -0.973 6.973 14 C -0.631 4.631 15 C -0.141 4.141 16 C -0.122 4.122 17 C -0.117 4.117 18 C 0.092 3.908 19 C -0.462 4.462 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.134 4.134 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.422 0.578 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.284 0.716 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -0.049 -12.652 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.012 4.012 4 H 0.107 0.893 5 C -0.053 4.053 6 O -0.285 6.285 7 C -0.049 4.049 8 C 0.018 3.982 9 H 0.131 0.869 10 N -0.855 5.855 11 S 2.782 3.218 12 O -0.961 6.961 13 O -0.964 6.964 14 C -0.722 4.722 15 C -0.162 4.162 16 C -0.141 4.141 17 C -0.137 4.137 18 C 0.088 3.912 19 C -0.492 4.492 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.155 4.155 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.258 0.742 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.712 -0.562 -12.414 12.969 hybrid contribution -1.343 1.082 0.764 1.886 sum -5.055 0.520 -11.651 12.711 Atomic orbital electron populations 1.22858 0.80735 1.03077 1.00071 1.87869 1.19731 1.26023 1.94717 1.23797 0.95273 0.86483 0.95601 0.89306 1.23959 0.84574 0.99928 0.96881 1.89163 1.19979 1.85123 1.34271 1.24063 0.97288 1.00845 0.82691 1.22236 0.92712 0.85187 0.98058 0.86866 1.55338 1.77229 1.12663 1.40235 1.01793 0.74027 0.73184 0.72816 1.93536 1.48369 1.67669 1.86524 1.93526 1.86382 1.31094 1.85370 1.29763 1.18147 1.04143 1.20195 1.20094 0.99036 0.97217 0.99862 1.20822 0.99446 0.96214 0.97631 1.21655 0.98596 0.92713 1.00695 1.17669 0.89410 0.93537 0.90542 1.19556 1.38237 0.93383 0.97982 0.90003 1.25933 0.92557 1.00058 0.95754 1.69775 1.33147 1.35989 1.02875 0.86301 0.80088 0.81997 0.78033 1.18758 1.20219 1.18782 1.20733 0.99969 0.92256 1.02527 0.94206 0.89396 0.93440 0.88524 0.91226 0.90737 0.87534 0.74240 0.87570 0.88396 0.85761 0.90458 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.48 8.80 -35.23 -0.31 -4.79 16 3 C 0.05 0.56 3.61 -25.16 -0.09 0.47 16 4 H 0.09 0.89 7.82 -51.93 -0.41 0.48 16 5 C 0.02 0.24 7.38 37.94 0.28 0.52 16 6 O -0.37 -4.75 11.65 -35.23 -0.41 -5.16 16 7 C 0.03 0.37 7.35 37.93 0.28 0.65 16 8 C 0.13 1.71 3.67 -66.37 -0.24 1.47 16 9 H 0.11 1.53 7.41 -51.93 -0.38 1.15 16 10 N -1.10 -16.50 5.15 -3.56 -0.02 -16.52 16 11 S 2.69 50.54 5.65 -107.50 -0.61 49.94 16 12 O -0.97 -19.98 17.02 -57.17 -0.97 -20.95 16 13 O -0.97 -20.38 17.27 -57.17 -0.99 -21.36 16 14 C -0.63 -13.51 5.89 -39.66 -0.23 -13.75 16 15 C -0.14 -3.05 9.53 -39.29 -0.37 -3.42 16 16 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 17 C -0.12 -2.83 8.70 -38.87 -0.34 -3.17 16 18 C 0.09 2.29 5.58 -106.82 -0.60 1.70 16 19 C -0.46 -11.42 9.05 -37.74 -0.34 -11.77 16 20 H 0.08 1.91 7.91 -52.49 -0.42 1.49 16 21 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 22 N -0.79 -19.41 10.95 55.55 0.61 -18.80 16 23 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 27 C -0.13 -3.07 8.72 -38.87 -0.34 -3.41 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.39 8.06 -51.92 -0.42 0.97 16 35 H 0.42 5.93 7.79 -34.47 -0.27 5.66 16 36 H 0.11 2.12 7.60 -52.49 -0.40 1.72 16 37 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 39 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 40 H 0.11 2.40 7.60 -52.49 -0.40 2.01 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -30.82 348.35 -8.97 -39.79 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.10 Total: 10.87 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -1.39 Total: -30.75 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.59 Total: -35.32 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -2.68 Total: -52.26 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.61 Total: 49.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.82 -8.97 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.389 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds