Wall clock time and date at job start Fri Apr 10 2020 18:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00191 * 2 1 4 4 H 1.08999 * 110.45542 * 27.39381 * 3 2 1 5 5 C 1.54484 * 110.62383 * 264.70928 * 3 2 1 6 6 O 1.44424 * 104.80522 * 265.27485 * 5 3 2 7 7 C 1.44427 * 105.27149 * 319.49031 * 6 5 3 8 8 C 1.54476 * 104.80453 * 40.51265 * 7 6 5 9 9 H 1.09001 * 110.62682 * 217.31346 * 8 7 6 10 10 N 1.46503 * 110.51175 * 94.66225 * 8 7 6 11 11 S 1.65598 * 119.99850 * 100.35685 * 10 8 7 12 12 O 1.42101 * 106.40164 * 311.46020 * 11 10 8 13 13 O 1.42103 * 106.40351 * 178.54295 * 11 10 8 14 14 C 1.76201 * 107.21901 * 64.99923 * 11 10 8 15 15 C 1.38651 * 119.87409 * 90.00162 * 14 11 10 16 16 C 1.38617 * 120.50144 * 179.97438 * 15 14 11 17 17 C 1.37633 * 120.24979 * 0.02562 * 16 15 14 18 18 C 1.40702 * 119.74087 * 359.97438 * 17 16 15 19 19 C 1.41402 * 120.24183 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00026 * 204.38058 * 19 18 17 21 21 C 1.39948 * 119.99922 * 24.39219 * 19 18 17 22 22 N 1.30820 * 119.99960 * 17.84149 * 21 19 18 23 23 Si 1.86797 * 119.99870 * 197.85213 * 21 19 18 24 24 H 1.48505 * 109.47252 * 59.99063 * 23 21 19 25 25 H 1.48495 * 109.47475 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46916 * 299.99854 * 23 21 19 27 27 C 1.37597 * 119.87527 * 269.72468 * 14 11 10 28 28 H 1.08997 * 109.47411 * 60.00035 * 1 2 3 29 29 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46795 * 299.99741 * 1 2 3 31 31 H 1.09005 * 110.37168 * 24.11190 * 5 3 2 32 32 H 1.08995 * 110.36912 * 146.44090 * 5 3 2 33 33 H 1.08994 * 110.37335 * 281.67666 * 7 6 5 34 34 H 1.09008 * 110.36662 * 159.34404 * 7 6 5 35 35 H 0.96998 * 120.00178 * 280.35938 * 10 8 7 36 36 H 1.08001 * 119.75342 * 359.95493 * 15 14 11 37 37 H 1.07998 * 119.87661 * 180.02562 * 16 15 14 38 38 H 1.07997 * 120.13042 * 179.97438 * 17 16 15 39 39 H 0.97008 * 119.99669 * 180.02562 * 22 21 19 40 40 H 1.07997 * 120.12851 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3369 2.0223 0.4699 5 6 2.3534 1.7483 -1.4397 6 8 3.7415 1.3903 -1.6150 7 6 4.3817 1.7258 -0.3645 8 6 3.3753 1.2903 0.7235 9 1 3.3761 1.9978 1.5526 10 7 3.6880 -0.0589 1.2014 11 16 4.5032 -0.2635 2.6283 12 8 5.6232 0.6097 2.5793 13 8 4.6191 -1.6659 2.8266 14 6 3.4603 0.3366 3.9155 15 6 2.5686 -0.5228 4.5390 16 6 1.7425 -0.0646 5.5535 17 6 1.7990 1.2514 5.9526 18 6 2.7002 2.1324 5.3270 19 6 2.7674 3.4864 5.7290 20 1 3.1312 4.2362 5.0421 21 6 2.3629 3.8548 7.0171 22 7 2.2578 2.9479 7.9541 23 14 1.9727 5.6413 7.3983 24 1 0.8614 6.1020 6.5276 25 1 1.5702 5.7672 8.8221 26 1 3.1758 6.4751 7.1479 27 6 3.5380 1.6548 4.3021 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7305 1.2164 -2.1589 32 1 2.2227 2.8251 -1.5467 33 1 4.5622 2.7991 -0.3067 34 1 5.3172 1.1765 -0.2579 35 1 3.4176 -0.8322 0.6821 36 1 2.5170 -1.5569 4.2318 37 1 1.0520 -0.7428 6.0325 38 1 1.1543 1.6063 6.7429 39 1 1.9771 3.2033 8.8469 40 1 4.2368 2.3213 3.8184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591331284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:08 Heat of formation + Delta-G solvation = -161.896979 kcal Electronic energy + Delta-G solvation = -26608.639714 eV Core-core repulsion = 22707.562714 eV Total energy + Delta-G solvation = -3901.077000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90492 -39.44951 -38.27490 -37.91098 -36.91604 -35.68911 -35.57455 -31.91670 -31.59946 -30.87708 -29.19333 -27.38899 -27.33223 -23.81549 -23.65191 -22.83746 -22.16793 -20.70957 -19.60952 -18.78342 -18.31010 -17.73505 -17.35986 -17.11910 -16.94134 -16.56632 -16.40660 -16.01724 -15.63189 -15.47345 -15.23364 -15.06267 -14.41707 -14.30961 -13.74948 -13.71722 -13.48622 -13.28492 -13.17960 -13.06963 -13.03708 -12.87703 -12.79829 -12.56367 -12.54389 -12.39409 -12.20867 -12.01864 -11.56389 -11.44292 -11.16258 -11.12122 -10.66712 -10.14035 -9.85213 -9.56026 -8.72118 -6.44020 -0.51976 0.40285 0.84705 1.39031 1.48119 1.51444 2.03597 2.18424 2.55371 2.65527 2.87667 2.96316 3.39830 3.47015 3.54203 3.81630 3.95405 4.09161 4.26190 4.32559 4.34964 4.44913 4.55079 4.58861 4.64391 4.81651 4.83821 4.84266 4.89562 4.90934 4.95819 5.08122 5.21701 5.40977 5.56564 5.70853 5.89349 5.93898 6.05656 6.10075 6.30112 6.52972 6.80873 6.85133 8.25718 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.004365 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.485448 B = 6412.417738 C = 6966.916231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.387 6.387 3 C 0.049 3.951 4 H 0.102 0.898 5 C 0.026 3.974 6 O -0.384 6.384 7 C 0.030 3.970 8 C 0.112 3.888 9 H 0.109 0.891 10 N -1.082 6.082 11 S 2.716 3.284 12 O -0.987 6.987 13 O -0.992 6.992 14 C -0.636 4.636 15 C -0.148 4.148 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.065 3.935 19 C -0.494 4.494 20 H 0.086 0.914 21 C 0.036 3.964 22 N -0.825 5.825 23 Si 0.984 3.016 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.144 4.144 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.429 0.571 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.291 0.709 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 0.685 -13.887 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.305 6.305 3 C -0.011 4.011 4 H 0.120 0.880 5 C -0.051 4.051 6 O -0.303 6.303 7 C -0.048 4.048 8 C 0.004 3.996 9 H 0.127 0.873 10 N -0.843 5.843 11 S 2.808 3.192 12 O -0.977 6.977 13 O -0.983 6.983 14 C -0.725 4.725 15 C -0.168 4.168 16 C -0.142 4.142 17 C -0.160 4.160 18 C 0.061 3.939 19 C -0.523 4.523 20 H 0.104 0.896 21 C -0.179 4.179 22 N -0.451 5.451 23 Si 0.804 3.196 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.184 1.184 27 C -0.165 4.165 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.506 0.163 -13.639 14.365 hybrid contribution -1.107 0.758 1.060 1.710 sum -5.613 0.921 -12.579 13.806 Atomic orbital electron populations 1.23015 0.79379 1.03946 1.00867 1.87826 1.21271 1.26543 1.94885 1.23860 0.94274 0.86694 0.96301 0.87974 1.24130 0.83287 1.01582 0.96119 1.89141 1.21418 1.85558 1.34216 1.24060 0.96531 1.01930 0.82279 1.22530 0.94732 0.83843 0.98517 0.87284 1.54956 1.76915 1.14003 1.38462 1.00916 0.73414 0.72112 0.72719 1.93511 1.49234 1.68093 1.86882 1.93492 1.86663 1.32126 1.85989 1.30189 1.17907 1.03529 1.20876 1.20408 0.98742 0.98146 0.99550 1.21109 0.99724 0.95845 0.97516 1.21653 0.99252 0.93787 1.01293 1.18027 0.90134 0.94224 0.91471 1.19861 1.39803 0.93697 0.98979 0.89635 1.26785 0.91674 1.04402 0.95083 1.69829 1.33661 1.38132 1.03455 0.85219 0.79938 0.76355 0.78081 1.18003 1.19463 1.18416 1.20842 1.00039 0.93154 1.02434 0.91982 0.88605 0.94042 0.87382 0.88767 0.88656 0.88509 0.73362 0.85740 0.85872 0.86923 0.89808 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.85 113.37 1.23 1.63 16 2 O -0.39 -8.77 8.80 -148.98 -1.31 -10.09 16 3 C 0.05 1.02 3.61 31.61 0.11 1.14 16 4 H 0.10 1.83 7.82 -2.39 -0.02 1.81 16 5 C 0.03 0.45 7.38 72.49 0.53 0.99 16 6 O -0.38 -9.18 11.65 -148.98 -1.74 -10.92 16 7 C 0.03 0.71 7.35 72.48 0.53 1.25 16 8 C 0.11 2.88 3.67 46.00 0.17 3.05 16 9 H 0.11 2.88 7.41 -2.39 -0.02 2.86 16 10 N -1.08 -31.47 5.15 -165.17 -0.85 -32.32 16 11 S 2.72 100.55 5.65 -56.49 -0.32 100.23 16 12 O -0.99 -40.23 17.02 -128.00 -2.18 -42.41 16 13 O -0.99 -40.68 17.27 -128.00 -2.21 -42.89 16 14 C -0.64 -27.13 5.89 22.22 0.13 -27.00 16 15 C -0.15 -6.30 9.53 22.46 0.21 -6.09 16 16 C -0.12 -5.42 10.02 22.22 0.22 -5.19 16 17 C -0.14 -6.94 8.70 22.73 0.20 -6.74 16 18 C 0.06 3.29 5.58 -21.29 -0.12 3.18 16 19 C -0.49 -24.88 9.05 23.46 0.21 -24.67 16 20 H 0.09 4.06 7.91 -2.91 -0.02 4.04 16 21 C 0.04 1.71 5.14 85.26 0.44 2.15 16 22 N -0.83 -41.03 10.95 21.83 0.24 -40.79 16 23 Si 0.98 35.64 29.59 68.60 2.03 37.67 16 24 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 25 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 26 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 27 C -0.14 -6.69 8.72 22.73 0.20 -6.49 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 0.74 8.11 -2.38 -0.02 0.72 16 31 H 0.11 1.66 8.09 -2.38 -0.02 1.64 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 2.44 8.06 -2.38 -0.02 2.42 16 35 H 0.43 11.53 7.79 -96.75 -0.75 10.78 16 36 H 0.12 4.79 7.60 -2.91 -0.02 4.77 16 37 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 39 H 0.29 13.10 8.30 -92.70 -0.77 12.33 16 40 H 0.12 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -65.76 348.35 -1.94 -67.70 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.32 Total: 36.62 kcal Atomic # 6 Polarization: -66.89 SS G_CDS: 4.08 Total: -62.81 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -0.61 Total: -73.12 kcal Atomic # 8 Polarization: -98.86 SS G_CDS: -7.44 Total: -106.29 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Atomic # 16 Polarization: 100.55 SS G_CDS: -0.32 Total: 100.23 kcal Total: -65.76 -1.94 -67.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.193 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds