Wall clock time and date at job start Fri Apr 10 2020 18:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99755 * 2 1 4 4 C 1.38748 * 120.05892 * 0.24454 * 3 2 1 5 5 C 1.38124 * 119.94726 * 180.27820 * 4 3 2 6 6 C 1.38288 * 120.05288 * 359.72981 * 5 4 3 7 7 C 1.38246 * 120.10922 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05820 * 359.97438 * 7 6 5 9 9 S 1.76207 * 120.02803 * 179.97438 * 8 7 6 10 10 O 1.42098 * 106.40149 * 1.46220 * 9 8 7 11 11 O 1.42102 * 106.40009 * 228.54367 * 9 8 7 12 12 N 1.65596 * 107.21540 * 115.00192 * 9 8 7 13 13 C 1.47022 * 125.64668 * 89.97849 * 12 9 8 14 14 C 1.54327 * 107.27336 * 178.97441 * 13 12 9 15 15 C 1.55165 * 102.94078 * 337.80587 * 14 13 12 16 16 O 1.42901 * 111.00376 * 277.43038 * 15 14 13 17 17 C 1.50698 * 111.00281 * 153.57654 * 15 14 13 18 18 H 1.08004 * 119.99358 * 241.45191 * 17 15 14 19 19 C 1.37866 * 120.00194 * 61.45698 * 17 15 14 20 20 N 1.31513 * 120.00337 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00033 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47317 * 89.99778 * 21 19 17 23 23 H 1.48505 * 109.46950 * 209.99900 * 21 19 17 24 24 H 1.48503 * 109.47234 * 329.99574 * 21 19 17 25 25 C 1.47425 * 125.64997 * 270.01607 * 12 9 8 26 26 H 1.08994 * 109.47270 * 60.00394 * 1 2 3 27 27 H 1.08996 * 109.46832 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47090 * 300.00412 * 1 2 3 29 29 H 1.08004 * 120.02806 * 0.03249 * 4 3 2 30 30 H 1.08003 * 119.97320 * 179.75107 * 5 4 3 31 31 H 1.07997 * 119.94128 * 180.02562 * 6 5 4 32 32 H 1.08008 * 119.96782 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.88723 * 59.55850 * 13 12 9 34 34 H 1.08998 * 109.88661 * 298.38831 * 13 12 9 35 35 H 1.08993 * 110.72079 * 96.16743 * 14 13 12 36 36 H 1.09002 * 110.72173 * 219.44580 * 14 13 12 37 37 H 0.96702 * 113.99787 * 298.54082 * 16 15 14 38 38 H 0.97003 * 120.00526 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36855 * 322.93307 * 25 12 9 40 40 H 1.08999 * 110.36490 * 85.14622 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 0.0051 5 6 1.9208 3.6048 -0.0007 6 6 3.3019 3.6759 -0.0060 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0002 9 16 4.3929 -0.1915 -0.0009 10 8 5.7539 0.2163 0.0268 11 8 3.8512 -1.0228 -1.0181 12 7 4.1068 -0.9635 1.4359 13 6 3.0489 -1.9550 1.6799 14 6 3.1826 -2.4161 3.1466 15 6 4.6592 -2.0789 3.4837 16 8 5.5375 -3.1081 3.0238 17 6 4.8353 -1.8418 4.9614 18 1 5.1766 -0.8808 5.3172 19 6 4.5610 -2.8516 5.8591 20 7 4.1452 -4.0216 5.4259 21 14 4.7787 -2.5574 7.6909 22 1 3.5095 -2.0414 8.2637 23 1 5.1397 -3.8343 8.3578 24 1 5.8601 -1.5629 7.9076 25 6 4.8700 -0.7700 2.6822 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2128 2.3204 0.0097 30 1 1.3339 4.5114 -0.0008 31 1 3.7921 4.6381 -0.0101 32 1 5.1344 2.5753 -0.0097 33 1 3.1767 -2.8058 1.0108 34 1 2.0710 -1.5002 1.5221 35 1 2.5030 -1.8574 3.7900 36 1 3.0027 -3.4878 3.2319 37 1 5.3766 -3.9719 3.4276 38 1 3.9525 -4.7322 6.0575 39 1 5.9276 -0.6268 2.4611 40 1 4.4803 0.0834 3.2371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:11 Heat of formation + Delta-G solvation = -146.894321 kcal Electronic energy + Delta-G solvation = -27113.164668 eV Core-core repulsion = 23212.738232 eV Total energy + Delta-G solvation = -3900.426436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25900 -39.73005 -38.67383 -38.12520 -36.96406 -36.01398 -34.16146 -32.49348 -31.24992 -30.85598 -29.95814 -28.25850 -26.69400 -24.37243 -23.29712 -23.03008 -21.61698 -20.27220 -19.58505 -19.10391 -18.54785 -17.98954 -17.51577 -16.91420 -16.83083 -16.57510 -16.11751 -16.00169 -15.71037 -15.44542 -15.07713 -14.78415 -14.48157 -14.11030 -13.88180 -13.64658 -13.44459 -13.42130 -13.22751 -13.14457 -13.13446 -12.80127 -12.76284 -12.56663 -12.53977 -12.27126 -12.17177 -12.06516 -11.84954 -11.60134 -11.17741 -10.60087 -10.48350 -10.08001 -9.86167 -9.44556 -8.17895 -6.33169 -0.67473 -0.19433 0.30197 1.44825 1.48219 1.57166 1.92439 2.14577 2.42889 2.49395 2.75012 3.06631 3.22513 3.74042 3.77714 3.83527 4.14291 4.15281 4.25141 4.33856 4.36647 4.38457 4.44814 4.49114 4.67421 4.70524 4.72689 4.76880 4.96523 4.99706 5.17072 5.24884 5.27724 5.33084 5.47123 5.52290 5.61165 5.66199 5.83206 6.15901 6.16484 6.71583 7.37214 7.46011 8.88086 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.004270 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.672945 B = 6556.359193 C = 6695.150391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.334 6.334 3 C 0.208 3.792 4 C -0.229 4.229 5 C -0.019 4.019 6 C -0.176 4.176 7 C -0.008 4.008 8 C -0.726 4.726 9 S 2.718 3.282 10 O -0.991 6.991 11 O -0.981 6.981 12 N -1.004 6.004 13 C 0.131 3.869 14 C -0.120 4.120 15 C 0.233 3.767 16 O -0.594 6.594 17 C -0.558 4.558 18 H 0.061 0.939 19 C 0.035 3.965 20 N -0.909 5.909 21 Si 0.961 3.039 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.136 3.864 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.168 0.832 30 H 0.175 0.825 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.376 0.624 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 14.398 -8.794 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.246 6.246 3 C 0.160 3.840 4 C -0.248 4.248 5 C -0.037 4.037 6 C -0.195 4.195 7 C -0.027 4.027 8 C -0.817 4.817 9 S 2.814 3.186 10 O -0.981 6.981 11 O -0.971 6.971 12 N -0.843 5.843 13 C 0.006 3.994 14 C -0.159 4.159 15 C 0.192 3.808 16 O -0.403 6.403 17 C -0.596 4.596 18 H 0.079 0.921 19 C -0.167 4.167 20 N -0.548 5.548 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.199 1.199 25 C 0.011 3.989 26 H 0.098 0.902 27 H 0.135 0.865 28 H 0.097 0.903 29 H 0.185 0.815 30 H 0.193 0.807 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.225 0.775 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.400 14.238 -9.867 20.205 hybrid contribution -0.496 -0.302 1.548 1.653 sum -10.896 13.936 -8.319 19.549 Atomic orbital electron populations 1.23547 0.74928 1.06305 1.03342 1.86167 1.25098 1.26521 1.86841 1.18620 0.90232 0.86273 0.88890 1.21734 1.01877 0.91543 1.09628 1.21794 0.94755 0.98267 0.88879 1.21598 0.94704 0.98794 1.04374 1.21078 1.01192 0.90473 0.89968 1.29935 1.05066 1.19240 1.27489 1.00624 0.72888 0.73585 0.71462 1.93486 1.33948 1.84012 1.86697 1.93500 1.80626 1.67344 1.55654 1.58257 1.44592 1.54598 1.26820 1.21795 0.89660 0.90180 0.97770 1.22945 0.99306 1.01143 0.92530 1.19855 0.86188 0.83996 0.90715 1.86137 1.61415 1.22611 1.70102 1.21711 1.46674 0.99541 0.91682 0.92116 1.25636 0.93273 0.94704 1.03041 1.69815 1.45104 1.03610 1.36299 0.85522 0.78498 0.77467 0.79851 1.19789 1.20959 1.19873 1.22038 0.94855 0.98660 0.83336 0.90249 0.86451 0.90332 0.81473 0.80737 0.81726 0.83589 0.93200 0.89905 0.91733 0.91301 0.77505 0.92141 0.92065 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -9.14 7.17 -82.87 -0.59 -9.74 16 3 C 0.21 5.66 6.63 22.50 0.15 5.81 16 4 C -0.23 -4.24 9.04 22.36 0.20 -4.03 16 5 C -0.02 -0.29 10.04 22.25 0.22 -0.06 16 6 C -0.18 -3.19 10.04 22.28 0.22 -2.97 16 7 C -0.01 -0.20 9.54 22.25 0.21 0.01 16 8 C -0.73 -22.80 5.92 22.36 0.13 -22.67 16 9 S 2.72 107.03 5.53 -56.49 -0.31 106.71 16 10 O -0.99 -42.69 16.29 -128.00 -2.09 -44.78 16 11 O -0.98 -42.47 16.87 -122.83 -2.07 -44.54 16 12 N -1.00 -41.49 3.70 -506.42 -1.87 -43.37 16 13 C 0.13 5.23 6.83 86.73 0.59 5.82 16 14 C -0.12 -5.36 5.38 31.79 0.17 -5.19 16 15 C 0.23 11.62 0.87 -10.14 -0.01 11.61 16 16 O -0.59 -31.85 13.16 -148.98 -1.96 -33.81 16 17 C -0.56 -29.19 8.27 25.60 0.21 -28.98 16 18 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 19 C 0.03 1.77 5.29 84.65 0.45 2.22 16 20 N -0.91 -47.21 10.76 21.44 0.23 -46.98 16 21 Si 0.96 40.97 29.54 68.60 2.03 43.00 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.14 6.09 6.28 86.86 0.55 6.63 16 26 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 27 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 0.95 7.65 -2.39 -0.02 0.94 16 29 H 0.17 1.91 6.30 -2.91 -0.02 1.89 16 30 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.15 3.71 7.33 -2.91 -0.02 3.68 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 2.85 6.12 -2.39 -0.01 2.83 16 35 H 0.06 2.84 8.03 -2.39 -0.02 2.82 16 36 H 0.07 3.26 7.55 -2.39 -0.02 3.24 16 37 H 0.38 20.08 7.57 -74.06 -0.56 19.52 16 38 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 39 H 0.06 2.85 7.78 -2.39 -0.02 2.83 16 40 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16 Total: -1.00 -70.64 340.82 -1.91 -72.55 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.52 Total: 31.43 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.22 Total: -30.48 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.64 Total: -90.34 kcal Atomic # 8 Polarization: -126.16 SS G_CDS: -6.71 Total: -132.87 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 107.03 SS G_CDS: -0.31 Total: 106.71 kcal Total: -70.64 -1.91 -72.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.346 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds